CV884768

Overview
NameCV884768
Unique NameCV884768
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length609
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10926 contig Csv1_Contig10926:965..1573. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884768 vs. ExPASy Swiss-Prot
Match: NLTP_MALDO (Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.527e-36
Identity = 72/114 (63.16%), Postives = 87/114 (76.32%), Query Frame = 3
Query:   21 AALKLVSALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 362
            A  KL   + LCM V+    A AITCGQV+ SLAPCIG++RSGG +P  CCNG+R++N  ARTT DRQTACNCLK  A SI  +N NNAAGLPG CGV++PYKISTST+C+ V+
Sbjct:    5 AVTKLALVVALCMAVS---VAHAITCGQVTSSLAPCIGYVRSGGAVPPACCNGIRTINGLARTTADRQTACNCLKNLAGSISGVNPNNAAGLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of CV884768 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDU (Non-specific lipid-transfer protein 1 OS=Prunus dulcis PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.527e-36
Identity = 70/114 (61.40%), Postives = 89/114 (78.07%), Query Frame = 3
Query:   21 AALKLVSALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 362
            A  KL   + LCM+V+ P+ AQAITCGQVS +LAPCI ++R GG +P  CCNG+R++N  ARTTPDRQ ACNCLKQ + S+P +N NNAA LPG CGV+IPY+IS ST+C+ V+
Sbjct:    5 AMTKLALVVALCMVVSVPI-AQAITCGQVSSNLAPCIPYVRGGGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVNIPYQISPSTNCANVK 117          
BLAST of CV884768 vs. ExPASy Swiss-Prot
Match: NLTP_PRUAV (Non-specific lipid-transfer protein OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.994e-36
Identity = 68/114 (59.65%), Postives = 89/114 (78.07%), Query Frame = 3
Query:   21 AALKLVSALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 362
            A  KL   + LCM+V+ P+ AQA+TCGQVS +LAPCI ++R GG +P  CCNG+R++N  A+TT DRQTACNCLKQ + S+P +N NNAA LPG CGV++PYKIS ST+C+ V+
Sbjct:    5 AMTKLALVVALCMVVSVPI-AQALTCGQVSSNLAPCIAYVRGGGAVPPACCNGIRNINNLAKTTADRQTACNCLKQLSASVPGVNANNAAALPGKCGVNVPYKISPSTNCATVK 117          
BLAST of CV884768 vs. ExPASy Swiss-Prot
Match: NLTP_HELAN (Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.866e-34
Identity = 69/113 (61.06%), Postives = 85/113 (75.22%), Query Frame = 3
Query:   24 ALKLVSALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 362
            A+ ++ A V CM+V  P + +A++CGQVS SLAPCI +L  GG +P  CC+GV+SLN+AA+TTPDRQ AC CLK A  SI  +N  NAA  PG CGVSIPYKIS STDCSKV+
Sbjct:    5 AMMVLCAGVTCMVVGAPYT-EALSCGQVSSSLAPCISYLTKGGAVPPACCSGVKSLNSAAKTTPDRQAACGCLKSAYNSISGVNAGNAASFPGKCGVSIPYKISPSTDCSKVQ 116          
BLAST of CV884768 vs. ExPASy Swiss-Prot
Match: LTP1_MORNI (Non-specific lipid-transfer protein 1 OS=Morus nigra PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 9.262e-34
Identity = 67/91 (73.63%), Postives = 73/91 (80.22%), Query Frame = 3
Query:   90 ITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 362
            ITCGQVS SLAPCI +LR+GG +P  CCNGVRSLN AA+TT DRQ ACNCLK A  SI  LNLN AAGLPG CGVS+PYKIS STDC  V+
Sbjct:    1 ITCGQVSSSLAPCINYLRAGGVVPANCCNGVRSLNNAAKTTADRQAACNCLKSAFNSIKGLNLNLAAGLPGKCGVSVPYKISPSTDCKSVK 91          
BLAST of CV884768 vs. ExPASy Swiss-Prot
Match: NLTP_SPIOL (Non-specific lipid-transfer protein OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 2.063e-33
Identity = 66/113 (58.41%), Postives = 83/113 (73.45%), Query Frame = 3
Query:   21 AALKLVSALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 359
            A +KL  A++LC++V  P +   ITCG VS  LAPCIG+L+ GGP+   CC G+++LNAAA TTPDR+TACNCLK AA +I  +N   AAGLPG CGV IPY IS ST+C+ V
Sbjct:    5 AVIKLACAVLLCIVVAAPYAEAGITCGMVSSKLAPCIGYLK-GGPLGGGCCGGIKALNAAAATTPDRKTACNCLKSAANAIKGINYGKAAGLPGMCGVHIPYAISPSTNCNAV 116          
BLAST of CV884768 vs. ExPASy Swiss-Prot
Match: NLTP2_BRANA (Non-specific lipid-transfer protein 2 OS=Brassica napus GN=LTP2 PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.063e-33
Identity = 70/117 (59.83%), Postives = 86/117 (73.50%), Query Frame = 3
Query:   18 MAALKLVSALVL-CMLVTGPLSAQA-ITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 362
            MA L  ++ LVL CM+V GP+++ A ++CG VSG +APCIG+L   GP+P  CC GV +LN  ARTTPDRQ AC CL  AA S P+LN   AAGLP ACGV+IPYKIS ST+C+ VR
Sbjct:    1 MAGLMKLACLVLACMIVAGPITSNAALSCGTVSGYVAPCIGYLTQNGPLPRGCCTGVTNLNNMARTTPDRQQACRCLVGAANSFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of CV884768 vs. ExPASy Swiss-Prot
Match: NLTPB_BRAOT (Non-specific lipid-transfer protein B OS=Brassica oleracea var. italica GN=WAX9B PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.695e-33
Identity = 71/117 (60.68%), Postives = 85/117 (72.65%), Query Frame = 3
Query:   18 MAALKLVSALVL-CMLVTGPLSAQA-ITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 362
            MA L  +S LVL CM+V GP++  A ++CG VSG+LA CIG+L   GP+P  CC GV +LN  ARTTPDRQ AC CL  AA S P+LN   AAGLP ACGV+IPYKIS ST+C+ VR
Sbjct:    1 MAGLVKLSCLVLACMIVAGPIATNAALSCGTVSGNLAACIGYLTQNGPLPRGCCTGVTNLNNMARTTPDRQQACRCLVGAANSFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of CV884768 vs. ExPASy Swiss-Prot
Match: NLTP3_BRANA (Non-specific lipid-transfer protein 3 OS=Brassica napus GN=LTP3 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.519e-33
Identity = 68/117 (58.12%), Postives = 88/117 (75.21%), Query Frame = 3
Query:   18 MAALKLVSALVL-CMLVTGPLSAQA-ITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 362
            MA L  +S LVL CM+V GP++  A ++CG VSG+LA CIG+L   GP+P  CC+GV SLN  ARTTPDRQ AC CL  AA ++P++N+  AAGLP ACGV+IPYKIS +T+C+ V+
Sbjct:    1 MAGLVKLSCLVLACMIVAGPIATNAALSCGTVSGNLAACIGYLTQNGPVPTACCSGVTSLNNMARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYKISKTTNCNSVK 117          
BLAST of CV884768 vs. ExPASy Swiss-Prot
Match: NLTP_PYRCO (Non-specific lipid-transfer protein OS=Pyrus communis PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.597e-33
Identity = 64/114 (56.14%), Postives = 83/114 (72.81%), Query Frame = 3
Query:   21 AALKLVSALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 362
            A +KL   + LCM V+    A AITC QVS +LAPCI ++RSGG +P  CCNG++++N  A+TTPDRQ ACNCLK  A S+  +N  NA  LPG CGV++PYKISTST+C+ V+
Sbjct:    5 AVIKLALVVALCMAVS---VAHAITCSQVSANLAPCINYVRSGGAVPPACCNGIKTINGLAKTTPDRQAACNCLKNLAGSVSGVNPGNAESLPGKCGVNVPYKISTSTNCATVK 115          
The following BLAST results are available for this feature:
BLAST of CV884768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTP_MALDO1.527e-3663.16Non-specific lipid-transfer protein OS=Malus domes... [more]
NLTP1_PRUDU1.527e-3661.40Non-specific lipid-transfer protein 1 OS=Prunus du... [more]
NLTP_PRUAV1.994e-3659.65Non-specific lipid-transfer protein OS=Prunus aviu... [more]
NLTP_HELAN1.866e-3461.06Non-specific lipid-transfer protein OS=Helianthus ... [more]
LTP1_MORNI9.262e-3473.63Non-specific lipid-transfer protein 1 OS=Morus nig... [more]
NLTP_SPIOL2.063e-3358.41Non-specific lipid-transfer protein OS=Spinacia ol... [more]
NLTP2_BRANA2.063e-3359.83Non-specific lipid-transfer protein 2 OS=Brassica ... [more]
NLTPB_BRAOT2.695e-3360.68Non-specific lipid-transfer protein B OS=Brassica ... [more]
NLTP3_BRANA3.519e-3358.12Non-specific lipid-transfer protein 3 OS=Brassica ... [more]
NLTP_PYRCO4.597e-3356.14Non-specific lipid-transfer protein OS=Pyrus commu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010E02_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T3_E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884768 ID=CV884768; Name=CV884768; organism=Citrus sinensis; type=EST; length=609bp
CTCAGGAGAAATCTCAAATGGCTGCCCTCAAGCTTGTTTCAGCTTTGGTT
CTGTGCATGTTGGTGACTGGTCCCCTGAGTGCTCAGGCCATAACATGTGG
GCAGGTGAGTGGCTCATTGGCACCATGCATCGGTTTCTTGAGATCGGGCG
GCCCTATACCTATGCCATGCTGCAACGGCGTCAGGTCTCTCAACGCTGCC
GCCAGAACCACACCTGACCGCCAAACTGCATGCAACTGCTTGAAGCAAGC
CGCCAGATCAATCCCTAGCCTCAACCTTAATAATGCTGCTGGTCTTCCAG
GAGCTTGTGGAGTCAGCATTCCTTACAAGATCAGCACCTCCACTGACTGC
TCTAAGGTCAGGTGAACAGGAATCTGGGCCGTTGATTTTCAGGTTTAAGT
TGACGGAGTAGAATAAATGTATAATAATAAGGACATTTTTGTGTCCGATT
TATGAGTCTCTCTCTACACTTTGTACTGCGAGTCTCGTTCGCGCCCTCGT
TTCATGTTATGTTTTATTGTCTTTGCTTTTCATGTCATCGTCAGTTTGTG
TCTATTCTGTTTATTAAATGAAATCTTGCCTTGTGTTCAGTTTAAAAAAA
AAAAAAAAA
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