CV884765

Overview
NameCV884765
Unique NameCV884765
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length849
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884765 vs. ExPASy Swiss-Prot
Match: PP438_ARATH (Pentatricopeptide repeat-containing protein At5g60960, mitochondrial OS=Arabidopsis thaliana GN=At5g60960 PE=2 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 3.512e-84
Identity = 159/256 (62.11%), Postives = 189/256 (73.83%), Query Frame = 3
Query:   87 FSRFSPTR---YLNFLSKPFSSKPTSNPKTIDDPDQVIARSLSGELLENLEADPLPISQRLHLIFSHVTPTPSLVQSTLNFSPEAGRAILGFNHWLTQNANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDNKEVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAGEMYRGGFELGTVAYNCILDCVSKL 845
            FS   P+R   +  F S+ FSS+  +  +++D  +  IA S S EL  N +A+   ISQR +L FSH+TP P L+  TLN SPEAGRA LGFN WL  N+NFSHTDET+SFF DYFGRRKDFK + + +   K + G KTL S IDRLVRAGRP QV  FFE+ME DYG KRDK+SL LVV+KLCE G+AS AEK+VK+TANEIFPD+ ICDLLI GWC+  KLDEA RLAGEM RGGFE+GT AYN +LDCV KL
Sbjct:   40 FSPLPPSRSSIFSTFPSRFFSSETNAESESLDSNE--IALSFSKELTGNPDAESQTISQRFNLSFSHITPNPDLILQTLNLSPEAGRAALGFNEWLDSNSNFSHTDETVSFFVDYFGRRKDFKGMLEIISKYKGIAGGKTLESAIDRLVRAGRPKQVTDFFEKMENDYGLKRDKESLTLVVKKLCEKGHASIAEKMVKNTANEIFPDENICDLLISGWCIAEKLDEATRLAGEMSRGGFEIGTKAYNMMLDCVCKL 293          
BLAST of CV884765 vs. ExPASy Swiss-Prot
Match: PP150_ARATH (Pentatricopeptide repeat-containing protein At2g13420, mitochondrial OS=Arabidopsis thaliana GN=At2g13420 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.233e-12
Identity = 50/193 (25.91%), Postives = 86/193 (44.56%), Query Frame = 3
Query:  279 VTPTPSLVQSTLNFSPEAGRAILGFNHWLTQNANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDNKEVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLV-----VEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAGEMYRGGFELGTVAYNCILDCVSK 842
            ++ TP+L+  TL       +  L F  +L    + S T  + +   D  GR + F  +   +V+  +   P+T    + RL+ AG   Q +  F+    D     +    RLV     ++ LC+ GY   A  +  +   E   D+K+  +LI GWC   ++D A++   EM   G E   V YN +L+ + +
Sbjct:   67 ISLTPNLIHQTLLRLRHNSKIALSFFQYLRSLPSPSTTPTSFNLIIDILGRVRQFDVVRQLIVEMDQT-SPETFLILVKRLIAAGLTRQAVRAFD----DAPCFLENRRFRLVEFGFLLDTLCKYGYTKMAVGVFNERKEEFGSDEKVYTILIAGWCKLRRIDMAEKFLVEMIESGIEPNVVTYNVLLNGICR 254          
BLAST of CV884765 vs. ExPASy Swiss-Prot
Match: PP112_ARATH (Pentatricopeptide repeat-containing protein At1g71060, mitochondrial OS=Arabidopsis thaliana GN=At1g71060 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.587e-12
Identity = 51/188 (27.13%), Postives = 84/188 (44.68%), Query Frame = 3
Query:  288 TPSLVQSTLNFSPEAGRAILGFNHWLTQNANFSHTDETLSFFTDYFGRRKDFKAIHDFLVD--NKEVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIF-PDDKICDLLIKGWCVDGKLDEAKRLAGEMYRGGFELGTVAYNCILDCVSK 842
            +P+L++  L     AG   L    W      F HT    +   +  G+ K FK I   + D   K++L  +T A    R  RA +  + +G F +ME ++GFK +      +++ L ++     A+K+      + F PD K   +L++GW  +  L     +  EM   GFE   VAY  I++   K
Sbjct:   93 SPALIEEVLKKLSNAGVLALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWSLVDDMKAKKLLSKETFALISRRYARARKVKEAIGAFHKME-EFGFKMESSDFNRMLDTLSKSRNVGDAQKVFDKMKKKRFEPDIKSYTILLEGWGQELNLLRVDEVNREMKDEGFEPDVVAYGIIINAHCK 279          
BLAST of CV884765 vs. ExPASy Swiss-Prot
Match: PP211_ARATH (Pentatricopeptide repeat-containing protein At3g04130, mitochondrial OS=Arabidopsis thaliana GN=At3g04130 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.363e-11
Identity = 43/191 (22.51%), Postives = 87/191 (45.55%), Query Frame = 3
Query:  267 IFSHVTPTPSLVQSTLNFSPEAGRAILGFNHWLTQNANFSHTDETLSFFTDYFGRRKDFKAIHDFL--VDNKEVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAGEMYRGGFELGTVAYNCILDC 833
            I   V  +  LV   L+   +  R+ LG   W        H+ +      D  G+ K +  + +F+  +   +++   T+A  + R   AG   + +G F+R+  ++G +++ +S+ L+++ LC+      A  ++    + I P+    ++ I GWC   +++EA     EM   GF    ++Y  I+ C
Sbjct:   79 ICKRVNLSDGLVHKLLHRFRDDWRSALGILKWAESCKGHKHSSDAYDMAVDILGKAKKWDRMKEFVERMRGDKLVTLNTVAKIMRRFAGAGEWEEAVGIFDRLG-EFGLEKNTESMNLLLDTLCKEKRVEQARVVLLQLKSHITPNAHTFNIFIHGWCKANRVEEALWTIQEMKGHGFRPCVISYTTIIRC 268          
BLAST of CV884765 vs. ExPASy Swiss-Prot
Match: PPR54_ARATH (Pentatricopeptide repeat-containing protein At1g20300, mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.780e-11
Identity = 45/170 (26.47%), Postives = 77/170 (45.29%), Query Frame = 3
Query:  345 LGFNHWLTQNANFSH-TDETLSFFTDYFGRRKDFKA---IHDFLVDNKEVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAGEMYRGGFELGTVAYNCILDCVSK 842
            L F +W T   ++ H +    +   D  G+ + F     + D +      +  +T    I R VRAG  ++ +  F RME DYG   DK +  +V+  L     AS A+       +   PD  +   L++GWC  G++ EA+++  EM   G E     Y+ ++D + +
Sbjct:  134 LAFFNWATSRDDYDHKSPHPYNEMIDLSGKVRQFDLAWHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRME-DYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSLKDRFEPDVIVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCR 302          
BLAST of CV884765 vs. ExPASy Swiss-Prot
Match: PP275_ARATH (Pentatricopeptide repeat-containing protein At3g49730 OS=Arabidopsis thaliana GN=At3g49730 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.834e-11
Identity = 44/183 (24.04%), Postives = 80/183 (43.72%), Query Frame = 3
Query:  291 PSLVQSTLNFSPEAGRAILGFNHWLTQNANFSHTDETLSFFTDYFGRRKDFKAIHDFLVD----NKEVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAGEMYRGGFELGTVAYNCIL 827
            P L+   L+   +AG     F  W T+   + H+ E          + + F A+   + +    N E++ P+     + R   A    + +   + M + YG + D+     +++ LC+NG    A K+ +D   +  P+ +    L+ GWC +GKL EAK +  +M   G E   V +  +L
Sbjct:   97 PGLIIRVLSRCGDAGNLGYRFFLWATKQPGYFHSYEVCKSMVMILSKMRQFGAVWGLIEEMRKTNPELIEPELFVVLMRRFASANMVKKAVEVLDEMPK-YGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMREKFPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLL 278          
The following BLAST results are available for this feature:
BLAST of CV884765 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PP438_ARATH3.512e-8462.11Pentatricopeptide repeat-containing protein At5g60... [more]
PP150_ARATH1.233e-1225.91Pentatricopeptide repeat-containing protein At2g13... [more]
PP112_ARATH3.587e-1227.13Pentatricopeptide repeat-containing protein At1g71... [more]
PP211_ARATH1.363e-1122.51Pentatricopeptide repeat-containing protein At3g04... [more]
PPR54_ARATH1.780e-1126.47Pentatricopeptide repeat-containing protein At1g20... [more]
PP275_ARATH8.834e-1124.04Pentatricopeptide repeat-containing protein At3g49... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010D11_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T7_D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884765 ID=CV884765; Name=CV884765; organism=Citrus sinensis; type=EST; length=849bp
GAATGCCTCCTTCGACCTCTCTGCTACTCGGCAGACTTCTCCTTCAACAG
CGCCCCCACCGCTTCATTTCTCCACAATCCACTTATTTTTCCCGTTTTTC
CCCCACTCGTTACCTCAATTTCCTCTCTAAACCCTTTTCCTCTAAACCCA
CCTCAAACCCTAAAACCATAGATGACCCAGATCAAGTAATCGCCCGCTCT
CTCTCCGGAGAGTTACTCGAGAATCTTGAGGCTGACCCATTACCCATTTC
TCAGAGACTCCATCTCATCTTCTCTCACGTAACGCCCACGCCTTCGCTGG
TCCAATCCACACTCAATTTTTCGCCTGAAGCCGGCCGTGCGATTCTAGGG
TTTAACCACTGGCTTACTCAAAATGCAAATTTTTCACACACTGATGAAAC
GCTGTCCTTTTTCACTGACTATTTCGGTCGCAGAAAGGATTTCAAAGCCA
TCCATGATTTTCTTGTTGACAATAAGGAAGTTTTGGGACCTAAAACCTTA
GCATCTTGCATTGATAGATTGGTTAGGGCGGGTAGGCCTACTCAGGTTTT
AGGGTTTTTTGAGAGAATGGAGAGAGATTATGGGTTTAAAAGGGATAAAG
ATTCTCTTAGATTGGTTGTAGAGAAGTTATGTGAAAATGGGTATGCAAGT
TATGCGGAGAAATTGGTGAAAGACACTGCTAATGAGATATTCCCCGATGA
TAAGATATGTGATTTGTTGATTAAAGGTTGGTGTGTTGATGGGAAGCTTG
ATGAAGCAAAAAGATTAGCTGGGGAGATGTACAGAGGGGGCTTTGAGCTT
GGTACAGTCGCTTACAACTGTATTCTTGATTGTGTTTCTAAGCTTTTGT
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