EY665320

Overview
NameEY665320
Unique NameEY665320
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8095 contig Csv1_Contig8095:325..898. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY665320 vs. ExPASy Swiss-Prot
Match: PSAN_ARATH (Photosystem I reaction center subunit N, chloroplastic OS=Arabidopsis thaliana GN=PSAN PE=1 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 1.065e-41
Identity = 76/85 (89.41%), Postives = 82/85 (96.47%), Query Frame = 3
Query:  126 GVIDEYLERSKANKELNDQKRLATSGANFARVYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW 380
            GVIDEYLERSK NKELND+KRLATSGANFAR +TVQFG+CKFPENFTGCQDLAKQKKVPFIS+D+ LEC+GKDKYKCGSNVFWKW
Sbjct:   87 GVIDEYLERSKTNKELNDKKRLATSGANFARAFTVQFGSCKFPENFTGCQDLAKQKKVPFISEDIALECEGKDKYKCGSNVFWKW 171          
BLAST of EY665320 vs. ExPASy Swiss-Prot
Match: PSAN_MAIZE (Photosystem I reaction center subunit N, chloroplastic (Fragment) OS=Zea mays GN=PSAN PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.302e-39
Identity = 71/84 (84.52%), Postives = 81/84 (96.43%), Query Frame = 3
Query:  129 VIDEYLERSKANKELNDQKRLATSGANFARVYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW 380
            + DEYLE+SKANKELND+KRLATSGANFAR YTV+FG+C+FP NFTGCQDLAKQKKVPFISDDLE+EC+GK+K+KCGSNVFWKW
Sbjct:   29 IFDEYLEKSKANKELNDKKRLATSGANFARAYTVEFGSCQFPYNFTGCQDLAKQKKVPFISDDLEIECEGKEKFKCGSNVFWKW 112          
BLAST of EY665320 vs. ExPASy Swiss-Prot
Match: PSAN_HORVU (Photosystem I reaction center subunit N, chloroplastic OS=Hordeum vulgare GN=PSAN PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 4.949e-39
Identity = 71/84 (84.52%), Postives = 79/84 (94.05%), Query Frame = 3
Query:  129 VIDEYLERSKANKELNDQKRLATSGANFARVYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW 380
            V DEYLE+SK NKELND+KR ATSGANFAR YTVQFG+CKFP NFTGCQDLAKQKKVPFI+DDLE+EC+GK+K+KCGSNVFWKW
Sbjct:   62 VFDEYLEKSKLNKELNDKKRAATSGANFARAYTVQFGSCKFPYNFTGCQDLAKQKKVPFITDDLEIECEGKEKFKCGSNVFWKW 145          
BLAST of EY665320 vs. ExPASy Swiss-Prot
Match: PSAN_VOLCA (Photosystem I reaction center subunit N, chloroplastic OS=Volvox carteri GN=PSAN PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.309e-20
Identity = 46/79 (58.23%), Postives = 61/79 (77.22%), Query Frame = 3
Query:  126 GVIDEYLERSKANKELNDQKRLATSGANFARVYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGS 362
            GV+++ L +S ANK LN++KRLATS AN AR  TV  GTC+FPENF GC++LA  K V +I++DL++EC+GKD   CGS
Sbjct:   54 GVVEDLLAKSAANKALNNKKRLATSYANLARSRTVYDGTCQFPENFFGCEELAFNKGVKYIAEDLKIECEGKDAKSCGS 132          
The following BLAST results are available for this feature:
BLAST of EY665320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PSAN_ARATH1.065e-4189.41Photosystem I reaction center subunit N, chloropla... [more]
PSAN_MAIZE1.302e-3984.52Photosystem I reaction center subunit N, chloropla... [more]
PSAN_HORVU4.949e-3984.52Photosystem I reaction center subunit N, chloropla... [more]
PSAN_VOLCA2.309e-2058.23Photosystem I reaction center subunit N, chloropla... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-086-E09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665320 ID=EY665320; Name=EY665320; organism=Citrus sinensis; type=EST; length=574bp
CCACGCGTCCGCAAGTTGATGTTTCAAAAGAATCAAGAGGAACTGATGGA
AGGAGAGCTGCCATGGCTCTTCTAGCAGTTACCCTTTTCACCACAGCTAC
TGCTGCTGCTTCTTCTGCTAATGCTGGGGTCATCGATGAATACCTTGAGA
GAAGCAAAGCCAACAAGGAATTGAATGACCAGAAGAGATTGGCAACAAGT
GGTGCAAACTTTGCCAGAGTATACACTGTTCAATTTGGCACATGCAAGTT
CCCTGAGAACTTCACAGGCTGCCAAGATCTTGCCAAGCAAAAGAAAGTGC
CATTCATCTCGGATGATTTGGAATTGGAGTGCAAAGGGAAAGATAAATAC
AAGTGTGGTTCCAATGTTTTCTGGAAATGGTGAAGTGGGACAACTGATCT
CTTTAAACATTTTATTTTACCCTCCCATGTATCTAAGTTTCCATTGAAGA
AGCTTTACTTGTGCTTATTTGTGTGTTATATTTTTCTGCTCAGTATCTTT
TTATATCCTCATCATGTTTTTGCCTTTTTGGAAGAAAATGGGGGTTAGTT
ATGTAAAAAAAAAAAAAAAAAAAG
back to top