CV884757

Overview
NameCV884757
Unique NameCV884757
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length836
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9911 contig Csv1_Contig9911:62..897. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CV884757 vs. ExPASy Swiss-Prot
Match: Y5848_ARATH (Uncharacterized protein At5g48480 OS=Arabidopsis thaliana GN=At5g48480 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.812e-16
Identity = 58/146 (39.73%), Postives = 77/146 (52.74%), Query Frame = -3 
Query:  280 NGAAPEKAPATVASFTGMKPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGSTFLVSDVSG--DSAAAQTVGTGCVLCLETEDXXXXXXXXXXXXXXXXXXXXXXXXACCGERVGKVKDPYGFTWL 711
            NGA P +   T   FT  K  LLVEA K  DAV FYK+AFGA+E G S+  KRK +QELP +  ++L +AGS+F+V DVS     + A++ G+G    L T+D                           G + GKV DP+G TW+
Sbjct:   12 NGAGPVE---THLVFTEFKQMLLVEAQKVGDAVTFYKSAFGAIESGHSLYPKRKLDQELPHVLSSELNLAGSSFVVCDVSSLPGFSTAKSEGSGVTFLLGTKDAEAAVAKAVDAGAVKVEVTEAEVE--LGFK-GKVTDPFGVTWI 151
The following BLAST results are available for this feature:
BLAST of CV884757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5848_ARATH1.812e-1639.73Uncharacterized protein At5g48480 OS=Arabidopsis t... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_010D07_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T7_D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884757 ID=CV884757; Name=CV884757; organism=Citrus sinensis; type=EST; length=836bp
TTTTTTTTGAGATGATAAATTGATAATAAGAGTAGCAAGAAGTCTATAAC
TGCCAGCTGTCAGTTCCTTCAAAATTAATCAAAAACATCCATCATCACGA
TCAACGTTCAGCAATATCATCAAGATATCCGAAATACTAAAAGAGCCTAG
AGCTATAAACCCACAGCAGTAAAGACGAACGACAAAAGAGAGTTATGTGA
TAGTAGATCAATATCTAAAGATCAGATCCGGCGGCTCTTAAGCTTCCACG
CCAGCGCACTTCTTGACCGGGGAGCAAATGAGCCAAGTGAAGCCATAAGG
ATCTTTGACCTTTCCCACGCGCTCTCCACAACACGCGCCGTTGCCTTCAG
CGAGCTCACCCTCAGCAACAGCTCCAGCACTCACAGCCTTGGCGACGGCA
GCCTCCACGTCCTCGGTCTCCAAGCAAAGCACGCATCCGGTCCCCACGGT
CTGTGCAGCAGCAGAGTCACCGGAAACGTCAGAGACAAGGAAAGTGGAGC
CGGCAATCTCGAGTTGAGCGCAGGAGATGAGTGGGAGCTCCTGTTCAGCC
TTGCGTTTGGTTTCCACGCTACGGCCGATCTCCACGGCACCAAACGCGGT
CTTGTAGAACTGAACAGCGTCAGTAGCCTTCGGTGCTTCCACAAGCAACT
GCGGCTTCATCCCCGTGAAGCTGGCCACGGTAGCAGGAGCCTTCTCCGGC
GCAGCTCCATTCTGAACCTCCTGGACATCAGCCATTGAGCGAGAGAGTTT
TGGAGTCTAGAGACAAAGGAAAGAAACCTGACCCTAGGAGAGAGAAAGAG
AGAGAAAGAGAGAGAAAACGAAAGAGAGAGAAGCCT
back to top