CV884753

Overview
NameCV884753
Unique NameCV884753
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length584
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13697 contig Csv1_Contig13697:60..643. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CV884753 vs. ExPASy Swiss-Prot
Match: DEF_NELNU (Defensin-like protein OS=Nelumbo nucifera PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.959e-12
Identity = 35/57 (61.40%), Postives = 42/57 (73.68%), Query Frame = 3 
Query:   45 MERSVRLFSTXXXXXXXX-ASEMGLRAAEARICESQSHRFKGPCVSKSNCAAVCQTE 212
            MER +RLFS+         A+EMG + AEAR CESQSHRFKG C+S +NCA+VCQTE
Sbjct:    1 MERGMRLFSSLVLVLLLVTATEMGPKVAEARTCESQSHRFKGACLSDTNCASVCQTE 57
The following BLAST results are available for this feature:
BLAST of CV884753 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
DEF_NELNU6.959e-1261.40Defensin-like protein OS=Nelumbo nucifera PE=3 SV=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010D03_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T7_D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884753 ID=CV884753; Name=CV884753; organism=Citrus sinensis; type=EST; length=584bp
CTCTCATCTATCTCTCTTGATTATTTTGGCCTTGAAGACTAAAGATGGAG
CGCTCAGTGCGTTTATTTTCAACTGTTCTACTTGTGCTGCTGCTTCTTGC
CAGTGAAATGGGGCTGAGGGCGGCAGAAGCTAGGATATGCGAGTCTCAGA
GTCACCGGTTCAAGGGGCCATGTGTGAGTAAGAGCAACTGTGCTGCTGTT
TGCCAAACTGAAGGGTTCCACGGTGGCCATTGCCGCGGATTCCGTCGTCG
ATGCTTTTGCACTAAAAGATGTTAAAAACACTTTATGAAGAAGCTAGTTT
CTTTACAATAATAACAAGGATCCCTTATCCCTGTGGCCGGATACTTGATT
TTGTTTGTTGTATTATCTTGGCGTATTTGCAGTTGTTGAGTTGCTAGAGC
TTTCATGTGTGAGGTGTGGTTGCGGTTTCTATTTATATTTGTAACCTTTT
GTATATCTCAAGTACTTGTATTTACATGTTAGATCCTTGATCAATAGTTT
CCTCATGGTTGATCTCAGGATCTGTGATGGCACTTACAAATAAATCGAAA
ATCTAGTGTTAATTTCAAAAAAAAAAAAAAACCT
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