CV884752

Overview
NameCV884752
Unique NameCV884752
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length593
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13697 contig Csv1_Contig13697:48..640. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CV884752 vs. ExPASy Swiss-Prot
Match: DEF_NELNU (Defensin-like protein OS=Nelumbo nucifera PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.210e-12
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = -3 
Query:  370 MERSVRLFSTXXXXXXXL-ASEMGLRAAEARICESQSHRFKGPCVSKSNCAAVCQTE 537
            MER +RLFS+       + A+EMG + AEAR CESQSHRFKG C+S +NCA+VCQTE
Sbjct:    1 MERGMRLFSSLVLVLLLVTATEMGPKVAEARTCESQSHRFKGACLSDTNCASVCQTE 57
The following BLAST results are available for this feature:
BLAST of CV884752 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
DEF_NELNU7.210e-1261.40Defensin-like protein OS=Nelumbo nucifera PE=3 SV=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010D03_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T3_D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884752 ID=CV884752; Name=CV884752; organism=Citrus sinensis; type=EST; length=593bp
TTTTTTTTTTTTTTTGAAATTAACACTAGATTTTCGATTTATTTGTAAGT
GCCATCACAGATCCTGAGATCAACCATGAGGAAACTATTGATCAAGGATC
TAACATGTAAATACAAGTACTTGAGATATACAAAAGGTTACAAATATAAA
TAGAAACCGCAACCACACCTCACACATGAAAGCTCTAGCAACTCAACAAC
TGCAAATACGCCAAGATAATACAACAAACAAAATCAAGTATCCGGCCACA
GGGATAAGGGATCCTTGTTATTATTGTAAAGAAACTAGCTTCTTCATAAA
GTGTTTTTAACATCTTTTAGTGCAAAAGCATCGACGACGGAATCCGCGGC
AATGGCCACCGTGGAACCCTTCAGTTTGGCAAACAGCAGCACAGTTGCTC
TTACTCACACATGGCCCCTTGAACCGGTGACTCTGAGACTCGCATATCCT
AGCTTCTGCCGCCCTCAGCCCCATTTCACTGGCAAGAAGCAGCAGCACAA
GTAGAACAGTTGAAAATAAACGCACTGAGCGCTCCATCTTTAGTCTTCAA
GGCCAAAATAATCAAGAGAGATTAGATGAGAGAGCAAAGGAGA
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