CV884748
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV884748 vs. ExPASy Swiss-Prot
Match: LDL3_ARATH (Lysine-specific histone demethylase 1 homolog 3 OS=Arabidopsis thaliana GN=FLD PE=1 SV=1) HSP 1 Score: 433.335 bits (1113), Expect = 6.924e-121 Identity = 209/258 (81.01%), Postives = 234/258 (90.70%), Query Frame = 1 Query: 1 QVLAGSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCANARALRMKVKVGKIPSKNAYSCASALTDLFREPDLEFGSFSVIF 774 +V AG+QV+EGDMVLCTVPLGVLK+GSIKF+PELPQRKLD IKRLG+GLLNKVAMLFPYVFW TDLDTFGHLT+D + RGEFFLFYSYA VAGG LLIALVAGEAAHKFE+MPPTDAVT+VL IL+GIYEP+GINVP+P+QTVCTRWGGDPFSLGSYSNVAVGASGDDYDI+AESVGDGRLFFAGEAT RRYPATMHGAF++GLRE A MA A AR +R ++ + PS+NA+SCA L DLFR+PDLEFGSF +IF Sbjct: 410 KVTAGNQVYEGDMVLCTVPLGVLKNGSIKFVPELPQRKLDCIKRLGFGLLNKVAMLFPYVFWSTDLDTFGHLTEDPNYRGEFFLFYSYAPVAGGALLIALVAGEAAHKFETMPPTDAVTRVLHILRGIYEPQGINVPDPLQTVCTRWGGDPFSLGSYSNVAVGASGDDYDILAESVGDGRLFFAGEATTRRYPATMHGAFVTGLREAANMAQSAKARGIRK--RIDRNPSRNAHSCAILLADLFRDPDLEFGSFCIIF 665
BLAST of CV884748 vs. ExPASy Swiss-Prot
Match: LDL3_ORYSJ (Lysine-specific histone demethylase 1 homolog 3 OS=Oryza sativa subsp. japonica GN=Os04g0560300 PE=2 SV=2) HSP 1 Score: 414.075 bits (1063), Expect = 4.347e-115 Identity = 201/257 (78.21%), Postives = 228/257 (88.72%), Query Frame = 1 Query: 4 VLAGSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCANARALRMKVKVGKIPSKNAYSCASALTDLFREPDLEFGSFSVIF 774 V+ G QV+EGDM LCTVPLGVLK+G +KF+PELPQRKLD+IKRLG+GLLNKVAMLFP+VFW TDLDTFGHLT+D S RGEFFLFYSYATVAGGPLL+ALVAGEAAH FE+ PPTDAV+ VL+IL+GIYEP+GI VP+P+Q+VCTRWG D FSLGSYS+VAVGASGDDYDI+AESVGDGRLFFAGEAT RRYPATMHGAF+SGLRE A + ANARA + KV+ G PS N +CA+ L DLFR+PDLEFGSFSVIF Sbjct: 425 VVNGGQVYEGDMALCTVPLGVLKNGGVKFVPELPQRKLDSIKRLGFGLLNKVAMLFPHVFWSTDLDTFGHLTEDPSHRGEFFLFYSYATVAGGPLLMALVAGEAAHNFETTPPTDAVSSVLKILRGIYEPQGIEVPDPLQSVCTRWGTDSFSLGSYSHVAVGASGDDYDILAESVGDGRLFFAGEATTRRYPATMHGAFISGLREAANITLHANARAAKSKVEKG--PSTNTQACAALLMDLFRQPDLEFGSFSVIF 679
BLAST of CV884748 vs. ExPASy Swiss-Prot
Match: LDL3_ORYSI (Lysine-specific histone demethylase 1 homolog 3 OS=Oryza sativa subsp. indica GN=B0103C08-B0602B01.13 PE=2 SV=1) HSP 1 Score: 414.075 bits (1063), Expect = 4.347e-115 Identity = 201/257 (78.21%), Postives = 228/257 (88.72%), Query Frame = 1 Query: 4 VLAGSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCANARALRMKVKVGKIPSKNAYSCASALTDLFREPDLEFGSFSVIF 774 V+ G QV+EGDM LCTVPLGVLK+G +KF+PELPQRKLD+IKRLG+GLLNKVAMLFP+VFW TDLDTFGHLT+D S RGEFFLFYSYATVAGGPLL+ALVAGEAAH FE+ PPTDAV+ VL+IL+GIYEP+GI VP+P+Q+VCTRWG D FSLGSYS+VAVGASGDDYDI+AESVGDGRLFFAGEAT RRYPATMHGAF+SGLRE A + ANARA + KV+ G PS N +CA+ L DLFR+PDLEFGSFSVIF Sbjct: 425 VVNGGQVYEGDMALCTVPLGVLKNGGVKFVPELPQRKLDSIKRLGFGLLNKVAMLFPHVFWSTDLDTFGHLTEDPSHRGEFFLFYSYATVAGGPLLMALVAGEAAHNFETTPPTDAVSSVLKILRGIYEPQGIEVPDPLQSVCTRWGTDSFSLGSYSHVAVGASGDDYDILAESVGDGRLFFAGEATTRRYPATMHGAFISGLREAANITLHANARAAKSKVEKG--PSTNTQACAALLMDLFRQPDLEFGSFSVIF 679
BLAST of CV884748 vs. ExPASy Swiss-Prot
Match: LDL1_ARATH (Lysine-specific histone demethylase 1 homolog 1 OS=Arabidopsis thaliana GN=LDL1 PE=1 SV=1) HSP 1 Score: 330.872 bits (847), Expect = 4.840e-90 Identity = 164/261 (62.84%), Postives = 200/261 (76.63%), Query Frame = 1 Query: 4 VLAGSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCANARALRMKVKVGKIPSKNAYSCAS----ALTDLFREPDLEFGSFSVIF 774 V G++ F DM LCTVPLGVLK GSI+F PELP +K +AI+RLG+GLLNKVAMLFP FW ++DTFG LT+D S+RGEFFLFYSY++V+GGPLL+ALVAG+AA +FE++ PTD+V +VLQIL+GIY PKGI VP+P+Q +C+RWG D FS GSYS VAVG+SGDDYDI+AESVGDGR+FFAGEAT R+YPATMHGAFLSG+RE A + A RA + +I L LF PDL FG+FSV+F Sbjct: 495 VYTGNKEFHCDMALCTVPLGVLKKGSIEFYPELPHKKKEAIQRLGFGLLNKVAMLFPCNFWGEEIDTFGRLTEDPSTRGEFFLFYSYSSVSGGPLLVALVAGDAAERFETLSPTDSVKRVLQILRGIYHPKGIVVPDPVQALCSRWGQDKFSYGSYSYVAVGSSGDDYDILAESVGDGRVFFAGEATNRQYPATMHGAFLSGMREAANILRVARRRASSSALNPNQICIDKEEEVDEEEDRCLDQLFETPDLTFGNFSVLF 755
BLAST of CV884748 vs. ExPASy Swiss-Prot
Match: LDL2_ARATH (Lysine-specific histone demethylase 1 homolog 2 OS=Arabidopsis thaliana GN=LDL2 PE=2 SV=1) HSP 1 Score: 314.694 bits (805), Expect = 3.589e-85 Identity = 158/258 (61.24%), Postives = 196/258 (75.97%), Query Frame = 1 Query: 1 QVLAGSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCANARALRMKVKVGKIPSKNAYSCASALTDLFREPDLEFGSFSVIF 774 +V++GSQ+F+ DM+LCTVPLGVLK SIKF PELP+RK AI RLG+GLLNKVAMLFP VFW +LDTFG L + S +RGEFFLFY+Y TV+GGP L+ALVAGEAA +FE P+ + +VL+ L+GIY PKG+ VP+PIQTVCTRWG DP S GSYS+V VG+SG DYDI+AESV + RLFFAGEAT R++PATMHGA+LSGLRE +K+ H AN +K V + N + L D+F+ PD+ G S +F Sbjct: 385 EVISGSQIFQADMILCTVPLGVLKKRSIKFEPELPRRKQAAIDRLGFGLLNKVAMLFPSVFWGDELDTFGCLNESSINRGEFFLFYAYHTVSGGPALVALVAGEAAQRFECTEPSVLLHRVLKKLRGIYGPKGVVVPDPIQTVCTRWGSDPLSYGSYSHVRVGSSGVDYDILAESVSN-RLFFAGEATTRQHPATMHGAYLSGLREASKILHVANYLRSNLKKPVQRYSGVN----INVLEDMFKRPDIAIGKLSFVF 637
BLAST of CV884748 vs. ExPASy Swiss-Prot
Match: LDL1_ORYSJ (Lysine-specific histone demethylase 1 homolog 1 OS=Oryza sativa subsp. japonica GN=Os02g0755200 PE=2 SV=1) HSP 1 Score: 314.694 bits (805), Expect = 3.589e-85 Identity = 159/260 (61.15%), Postives = 192/260 (73.85%), Query Frame = 1 Query: 4 VLAGSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCANARALRM----KVKVGKIPSKNAYSCASALTDLFREPDLEFGSFSVI 771 V Q F GDMVLCTVPLGVLK G+I+F+PELP +K +AI+RLG+GLLNKV +LFPY FW+ +DTFGHLT+DS RGEFFLFYSY++V+GGPLLIALVAGE+A +FE P + V KVL+ L+ I+ PKGI VP+P+Q +CTRWG D F+ GSYS VA+G+SGDDYDI+AESV D R+FFAGEAT RRYPATMHGA LSG RE A + A RA ++ K+ V L DLFR PD FG FSV+ Sbjct: 505 VYTDKQTFRGDMVLCTVPLGVLKKGNIQFVPELPAQKREAIERLGFGLLNKVVLLFPYDFWDGRIDTFGHLTEDSGQRGEFFLFYSYSSVSGGPLLIALVAGESAIEFEKTSPAENVEKVLETLRKIFSPKGIEVPKPLQAICTRWGTDKFTYGSYSYVAIGSSGDDYDILAESVCD-RVFFAGEATNRRYPATMHGALLSGYREAANIVRAARRRAKKVDSPKKMDVNNEVKYEVKVDNIDLDDLFRTPDAAFGGFSVL 763
BLAST of CV884748 vs. ExPASy Swiss-Prot
Match: LDL2_ORYSJ (Lysine-specific histone demethylase 1 homolog 2 OS=Oryza sativa subsp. japonica GN=Os08g0143400 PE=2 SV=1) HSP 1 Score: 311.997 bits (798), Expect = 2.327e-84 Identity = 161/254 (63.39%), Postives = 193/254 (75.98%), Query Frame = 1 Query: 13 GSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCANARALRMKVKVGKIPSKNAYSCASALTDLFREPDLEFGSFSVIF 774 G QVF+ DM LCT PLGVLKS SI F PELP+RKL+AI+RLG+GLLNKVAM+FP+VFW+ ++DTFG L + S RGEFFLFYSY TV+GG +LIALVAGEAA +FE + P A+ +VL ILKGIY PKG+ VP+PIQ+ CTRWG DP GSYS++ VG+SG DYDI+AESV D RLFFAGEAT R YPATMHGA LSGLRE +K+ H + +R L K + K+ + L DLF EPDLE G FS +F Sbjct: 391 GGQVFKADMALCTAPLGVLKSRSIIFEPELPERKLEAIQRLGFGLLNKVAMVFPHVFWDEEIDTFGCLNKERSKRGEFFLFYSYHTVSGGAVLIALVAGEAALEFEKVDPAVALHRVLGILKGIYGPKGVTVPDPIQSCCTRWGSDPLCSGSYSHIRVGSSGTDYDILAESVND-RLFFAGEATNRAYPATMHGALLSGLREASKILHASESR-LNSDYKKYAL-QKSIRLINNVLDDLFMEPDLECGRFSFVF 641
BLAST of CV884748 vs. ExPASy Swiss-Prot
Match: KDM1_MOUSE (Lysine-specific histone demethylase 1 OS=Mus musculus GN=Kdm1 PE=1 SV=2) HSP 1 Score: 196.052 bits (497), Expect = 1.861e-49 Identity = 104/217 (47.93%), Postives = 146/217 (67.28%), Query Frame = 1 Query: 22 VFEGDMVLCTVPLGVLKSG--SIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDG-----------RLFFAGEATIRRYPATMHGAFLSGLRETAKMA 633 +++ D VLCT+PLGVLK +++F+P LP+ K A++R+G+G LNKV + F VFW+ ++ FGH+ ++SRGE FLF++ + P+L+ALVAGEAA E++ V + L ILKGI+ VP+P +TV +RW DP++ GSYS VA G+SG+DYD+MA+ + G RLFFAGE TIR YPAT+HGA LSGLRE ++A Sbjct: 616 IYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWN---LYKAPILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSA--VPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIA 827
BLAST of CV884748 vs. ExPASy Swiss-Prot
Match: KDM1_HUMAN (Lysine-specific histone demethylase 1 OS=Homo sapiens GN=KDM1 PE=1 SV=2) HSP 1 Score: 196.052 bits (497), Expect = 1.861e-49 Identity = 104/217 (47.93%), Postives = 146/217 (67.28%), Query Frame = 1 Query: 22 VFEGDMVLCTVPLGVLKSG--SIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDG-----------RLFFAGEATIRRYPATMHGAFLSGLRETAKMA 633 +++ D VLCT+PLGVLK +++F+P LP+ K A++R+G+G LNKV + F VFW+ ++ FGH+ ++SRGE FLF++ + P+L+ALVAGEAA E++ V + L ILKGI+ VP+P +TV +RW DP++ GSYS VA G+SG+DYD+MA+ + G RLFFAGE TIR YPAT+HGA LSGLRE ++A Sbjct: 615 IYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWN---LYKAPILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSA--VPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIA 826
BLAST of CV884748 vs. ExPASy Swiss-Prot
Match: LSDA_DROME (Possible lysine-specific histone demethylase 1 OS=Drosophila melanogaster GN=Su(var)3-3 PE=1 SV=1) HSP 1 Score: 192.586 bits (488), Expect = 2.057e-48 Identity = 104/222 (46.85%), Postives = 145/222 (65.32%), Query Frame = 1 Query: 25 FEGDMVLCTVPLGVLK----------SGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESV---------GDGRLFFAGEATIRRYPATMHGAFLSGLRETAKMA 633 ++ D+V+CT+ LGVLK S ++KF P LP K AIKRLG+G LNKV + F +FW+ + + FGH+ ++SRGE FLF+S ++ P+L+ALVAG AA+ ES+ + + + +LK I+ +VP+P +TV TRW DP++ GSYS V+VG+SG DYD++A V G RLFFAGE TIR YPAT+HGA+LSGLRE ++A Sbjct: 609 YKADLVVCTLTLGVLKVAVAHKESQQSNTVKFDPPLPDWKQQAIKRLGFGNLNKVVLCFDRIFWDPNANLFGHVGSTTASRGEMFLFWS---ISSSPVLLALVAGMAANLVESVTDDIIIGRCMSVLKNIF--GNTSVPQPKETVVTRWRSDPWARGSYSYVSVGSSGSDYDLLAAPVIPPSSKDAEGLPRLFFAGEHTIRNYPATVHGAYLSGLREAGRIA 825 The following BLAST results are available for this feature:
BLAST of CV884748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 28
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Sequences
The
following sequences are available for this feature:
EST sequence >CV884748 ID=CV884748; Name=CV884748; organism=Citrus sinensis; type=EST; length=775bpback to top |