CV884748

Overview
NameCV884748
Unique NameCV884748
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length775
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884748 vs. ExPASy Swiss-Prot
Match: LDL3_ARATH (Lysine-specific histone demethylase 1 homolog 3 OS=Arabidopsis thaliana GN=FLD PE=1 SV=1)

HSP 1 Score: 433.335 bits (1113), Expect = 6.924e-121
Identity = 209/258 (81.01%), Postives = 234/258 (90.70%), Query Frame = 1
Query:    1 QVLAGSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCANARALRMKVKVGKIPSKNAYSCASALTDLFREPDLEFGSFSVIF 774
            +V AG+QV+EGDMVLCTVPLGVLK+GSIKF+PELPQRKLD IKRLG+GLLNKVAMLFPYVFW TDLDTFGHLT+D + RGEFFLFYSYA VAGG LLIALVAGEAAHKFE+MPPTDAVT+VL IL+GIYEP+GINVP+P+QTVCTRWGGDPFSLGSYSNVAVGASGDDYDI+AESVGDGRLFFAGEAT RRYPATMHGAF++GLRE A MA  A AR +R   ++ + PS+NA+SCA  L DLFR+PDLEFGSF +IF
Sbjct:  410 KVTAGNQVYEGDMVLCTVPLGVLKNGSIKFVPELPQRKLDCIKRLGFGLLNKVAMLFPYVFWSTDLDTFGHLTEDPNYRGEFFLFYSYAPVAGGALLIALVAGEAAHKFETMPPTDAVTRVLHILRGIYEPQGINVPDPLQTVCTRWGGDPFSLGSYSNVAVGASGDDYDILAESVGDGRLFFAGEATTRRYPATMHGAFVTGLREAANMAQSAKARGIRK--RIDRNPSRNAHSCAILLADLFRDPDLEFGSFCIIF 665          
BLAST of CV884748 vs. ExPASy Swiss-Prot
Match: LDL3_ORYSJ (Lysine-specific histone demethylase 1 homolog 3 OS=Oryza sativa subsp. japonica GN=Os04g0560300 PE=2 SV=2)

HSP 1 Score: 414.075 bits (1063), Expect = 4.347e-115
Identity = 201/257 (78.21%), Postives = 228/257 (88.72%), Query Frame = 1
Query:    4 VLAGSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCANARALRMKVKVGKIPSKNAYSCASALTDLFREPDLEFGSFSVIF 774
            V+ G QV+EGDM LCTVPLGVLK+G +KF+PELPQRKLD+IKRLG+GLLNKVAMLFP+VFW TDLDTFGHLT+D S RGEFFLFYSYATVAGGPLL+ALVAGEAAH FE+ PPTDAV+ VL+IL+GIYEP+GI VP+P+Q+VCTRWG D FSLGSYS+VAVGASGDDYDI+AESVGDGRLFFAGEAT RRYPATMHGAF+SGLRE A +   ANARA + KV+ G  PS N  +CA+ L DLFR+PDLEFGSFSVIF
Sbjct:  425 VVNGGQVYEGDMALCTVPLGVLKNGGVKFVPELPQRKLDSIKRLGFGLLNKVAMLFPHVFWSTDLDTFGHLTEDPSHRGEFFLFYSYATVAGGPLLMALVAGEAAHNFETTPPTDAVSSVLKILRGIYEPQGIEVPDPLQSVCTRWGTDSFSLGSYSHVAVGASGDDYDILAESVGDGRLFFAGEATTRRYPATMHGAFISGLREAANITLHANARAAKSKVEKG--PSTNTQACAALLMDLFRQPDLEFGSFSVIF 679          
BLAST of CV884748 vs. ExPASy Swiss-Prot
Match: LDL3_ORYSI (Lysine-specific histone demethylase 1 homolog 3 OS=Oryza sativa subsp. indica GN=B0103C08-B0602B01.13 PE=2 SV=1)

HSP 1 Score: 414.075 bits (1063), Expect = 4.347e-115
Identity = 201/257 (78.21%), Postives = 228/257 (88.72%), Query Frame = 1
Query:    4 VLAGSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCANARALRMKVKVGKIPSKNAYSCASALTDLFREPDLEFGSFSVIF 774
            V+ G QV+EGDM LCTVPLGVLK+G +KF+PELPQRKLD+IKRLG+GLLNKVAMLFP+VFW TDLDTFGHLT+D S RGEFFLFYSYATVAGGPLL+ALVAGEAAH FE+ PPTDAV+ VL+IL+GIYEP+GI VP+P+Q+VCTRWG D FSLGSYS+VAVGASGDDYDI+AESVGDGRLFFAGEAT RRYPATMHGAF+SGLRE A +   ANARA + KV+ G  PS N  +CA+ L DLFR+PDLEFGSFSVIF
Sbjct:  425 VVNGGQVYEGDMALCTVPLGVLKNGGVKFVPELPQRKLDSIKRLGFGLLNKVAMLFPHVFWSTDLDTFGHLTEDPSHRGEFFLFYSYATVAGGPLLMALVAGEAAHNFETTPPTDAVSSVLKILRGIYEPQGIEVPDPLQSVCTRWGTDSFSLGSYSHVAVGASGDDYDILAESVGDGRLFFAGEATTRRYPATMHGAFISGLREAANITLHANARAAKSKVEKG--PSTNTQACAALLMDLFRQPDLEFGSFSVIF 679          
BLAST of CV884748 vs. ExPASy Swiss-Prot
Match: LDL1_ARATH (Lysine-specific histone demethylase 1 homolog 1 OS=Arabidopsis thaliana GN=LDL1 PE=1 SV=1)

HSP 1 Score: 330.872 bits (847), Expect = 4.840e-90
Identity = 164/261 (62.84%), Postives = 200/261 (76.63%), Query Frame = 1
Query:    4 VLAGSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCANARALRMKVKVGKIPSKNAYSCAS----ALTDLFREPDLEFGSFSVIF 774
            V  G++ F  DM LCTVPLGVLK GSI+F PELP +K +AI+RLG+GLLNKVAMLFP  FW  ++DTFG LT+D S+RGEFFLFYSY++V+GGPLL+ALVAG+AA +FE++ PTD+V +VLQIL+GIY PKGI VP+P+Q +C+RWG D FS GSYS VAVG+SGDDYDI+AESVGDGR+FFAGEAT R+YPATMHGAFLSG+RE A +   A  RA    +   +I               L  LF  PDL FG+FSV+F
Sbjct:  495 VYTGNKEFHCDMALCTVPLGVLKKGSIEFYPELPHKKKEAIQRLGFGLLNKVAMLFPCNFWGEEIDTFGRLTEDPSTRGEFFLFYSYSSVSGGPLLVALVAGDAAERFETLSPTDSVKRVLQILRGIYHPKGIVVPDPVQALCSRWGQDKFSYGSYSYVAVGSSGDDYDILAESVGDGRVFFAGEATNRQYPATMHGAFLSGMREAANILRVARRRASSSALNPNQICIDKEEEVDEEEDRCLDQLFETPDLTFGNFSVLF 755          
BLAST of CV884748 vs. ExPASy Swiss-Prot
Match: LDL2_ARATH (Lysine-specific histone demethylase 1 homolog 2 OS=Arabidopsis thaliana GN=LDL2 PE=2 SV=1)

HSP 1 Score: 314.694 bits (805), Expect = 3.589e-85
Identity = 158/258 (61.24%), Postives = 196/258 (75.97%), Query Frame = 1
Query:    1 QVLAGSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCANARALRMKVKVGKIPSKNAYSCASALTDLFREPDLEFGSFSVIF 774
            +V++GSQ+F+ DM+LCTVPLGVLK  SIKF PELP+RK  AI RLG+GLLNKVAMLFP VFW  +LDTFG L + S +RGEFFLFY+Y TV+GGP L+ALVAGEAA +FE   P+  + +VL+ L+GIY PKG+ VP+PIQTVCTRWG DP S GSYS+V VG+SG DYDI+AESV + RLFFAGEAT R++PATMHGA+LSGLRE +K+ H AN     +K  V +    N     + L D+F+ PD+  G  S +F
Sbjct:  385 EVISGSQIFQADMILCTVPLGVLKKRSIKFEPELPRRKQAAIDRLGFGLLNKVAMLFPSVFWGDELDTFGCLNESSINRGEFFLFYAYHTVSGGPALVALVAGEAAQRFECTEPSVLLHRVLKKLRGIYGPKGVVVPDPIQTVCTRWGSDPLSYGSYSHVRVGSSGVDYDILAESVSN-RLFFAGEATTRQHPATMHGAYLSGLREASKILHVANYLRSNLKKPVQRYSGVN----INVLEDMFKRPDIAIGKLSFVF 637          
BLAST of CV884748 vs. ExPASy Swiss-Prot
Match: LDL1_ORYSJ (Lysine-specific histone demethylase 1 homolog 1 OS=Oryza sativa subsp. japonica GN=Os02g0755200 PE=2 SV=1)

HSP 1 Score: 314.694 bits (805), Expect = 3.589e-85
Identity = 159/260 (61.15%), Postives = 192/260 (73.85%), Query Frame = 1
Query:    4 VLAGSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCANARALRM----KVKVGKIPSKNAYSCASALTDLFREPDLEFGSFSVI 771
            V    Q F GDMVLCTVPLGVLK G+I+F+PELP +K +AI+RLG+GLLNKV +LFPY FW+  +DTFGHLT+DS  RGEFFLFYSY++V+GGPLLIALVAGE+A +FE   P + V KVL+ L+ I+ PKGI VP+P+Q +CTRWG D F+ GSYS VA+G+SGDDYDI+AESV D R+FFAGEAT RRYPATMHGA LSG RE A +   A  RA ++    K+ V              L DLFR PD  FG FSV+
Sbjct:  505 VYTDKQTFRGDMVLCTVPLGVLKKGNIQFVPELPAQKREAIERLGFGLLNKVVLLFPYDFWDGRIDTFGHLTEDSGQRGEFFLFYSYSSVSGGPLLIALVAGESAIEFEKTSPAENVEKVLETLRKIFSPKGIEVPKPLQAICTRWGTDKFTYGSYSYVAIGSSGDDYDILAESVCD-RVFFAGEATNRRYPATMHGALLSGYREAANIVRAARRRAKKVDSPKKMDVNNEVKYEVKVDNIDLDDLFRTPDAAFGGFSVL 763          
BLAST of CV884748 vs. ExPASy Swiss-Prot
Match: LDL2_ORYSJ (Lysine-specific histone demethylase 1 homolog 2 OS=Oryza sativa subsp. japonica GN=Os08g0143400 PE=2 SV=1)

HSP 1 Score: 311.997 bits (798), Expect = 2.327e-84
Identity = 161/254 (63.39%), Postives = 193/254 (75.98%), Query Frame = 1
Query:   13 GSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCANARALRMKVKVGKIPSKNAYSCASALTDLFREPDLEFGSFSVIF 774
            G QVF+ DM LCT PLGVLKS SI F PELP+RKL+AI+RLG+GLLNKVAM+FP+VFW+ ++DTFG L  + S RGEFFLFYSY TV+GG +LIALVAGEAA +FE + P  A+ +VL ILKGIY PKG+ VP+PIQ+ CTRWG DP   GSYS++ VG+SG DYDI+AESV D RLFFAGEAT R YPATMHGA LSGLRE +K+ H + +R L    K   +  K+     + L DLF EPDLE G FS +F
Sbjct:  391 GGQVFKADMALCTAPLGVLKSRSIIFEPELPERKLEAIQRLGFGLLNKVAMVFPHVFWDEEIDTFGCLNKERSKRGEFFLFYSYHTVSGGAVLIALVAGEAALEFEKVDPAVALHRVLGILKGIYGPKGVTVPDPIQSCCTRWGSDPLCSGSYSHIRVGSSGTDYDILAESVND-RLFFAGEATNRAYPATMHGALLSGLREASKILHASESR-LNSDYKKYAL-QKSIRLINNVLDDLFMEPDLECGRFSFVF 641          
BLAST of CV884748 vs. ExPASy Swiss-Prot
Match: KDM1_MOUSE (Lysine-specific histone demethylase 1 OS=Mus musculus GN=Kdm1 PE=1 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 1.861e-49
Identity = 104/217 (47.93%), Postives = 146/217 (67.28%), Query Frame = 1
Query:   22 VFEGDMVLCTVPLGVLKSG--SIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDG-----------RLFFAGEATIRRYPATMHGAFLSGLRETAKMA 633
            +++ D VLCT+PLGVLK    +++F+P LP+ K  A++R+G+G LNKV + F  VFW+  ++ FGH+   ++SRGE FLF++   +   P+L+ALVAGEAA   E++     V + L ILKGI+      VP+P +TV +RW  DP++ GSYS VA G+SG+DYD+MA+ +  G           RLFFAGE TIR YPAT+HGA LSGLRE  ++A
Sbjct:  616 IYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWN---LYKAPILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSA--VPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIA 827          
BLAST of CV884748 vs. ExPASy Swiss-Prot
Match: KDM1_HUMAN (Lysine-specific histone demethylase 1 OS=Homo sapiens GN=KDM1 PE=1 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 1.861e-49
Identity = 104/217 (47.93%), Postives = 146/217 (67.28%), Query Frame = 1
Query:   22 VFEGDMVLCTVPLGVLKSG--SIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDG-----------RLFFAGEATIRRYPATMHGAFLSGLRETAKMA 633
            +++ D VLCT+PLGVLK    +++F+P LP+ K  A++R+G+G LNKV + F  VFW+  ++ FGH+   ++SRGE FLF++   +   P+L+ALVAGEAA   E++     V + L ILKGI+      VP+P +TV +RW  DP++ GSYS VA G+SG+DYD+MA+ +  G           RLFFAGE TIR YPAT+HGA LSGLRE  ++A
Sbjct:  615 IYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWN---LYKAPILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSA--VPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIA 826          
BLAST of CV884748 vs. ExPASy Swiss-Prot
Match: LSDA_DROME (Possible lysine-specific histone demethylase 1 OS=Drosophila melanogaster GN=Su(var)3-3 PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.057e-48
Identity = 104/222 (46.85%), Postives = 145/222 (65.32%), Query Frame = 1
Query:   25 FEGDMVLCTVPLGVLK----------SGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESV---------GDGRLFFAGEATIRRYPATMHGAFLSGLRETAKMA 633
            ++ D+V+CT+ LGVLK          S ++KF P LP  K  AIKRLG+G LNKV + F  +FW+ + + FGH+   ++SRGE FLF+S   ++  P+L+ALVAG AA+  ES+     + + + +LK I+     +VP+P +TV TRW  DP++ GSYS V+VG+SG DYD++A  V         G  RLFFAGE TIR YPAT+HGA+LSGLRE  ++A
Sbjct:  609 YKADLVVCTLTLGVLKVAVAHKESQQSNTVKFDPPLPDWKQQAIKRLGFGNLNKVVLCFDRIFWDPNANLFGHVGSTTASRGEMFLFWS---ISSSPVLLALVAGMAANLVESVTDDIIIGRCMSVLKNIF--GNTSVPQPKETVVTRWRSDPWARGSYSYVSVGSSGSDYDLLAAPVIPPSSKDAEGLPRLFFAGEHTIRNYPATVHGAYLSGLREAGRIA 825          
The following BLAST results are available for this feature:
BLAST of CV884748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
LDL3_ARATH6.924e-12181.01Lysine-specific histone demethylase 1 homolog 3 OS... [more]
LDL3_ORYSJ4.347e-11578.21Lysine-specific histone demethylase 1 homolog 3 OS... [more]
LDL3_ORYSI4.347e-11578.21Lysine-specific histone demethylase 1 homolog 3 OS... [more]
LDL1_ARATH4.840e-9062.84Lysine-specific histone demethylase 1 homolog 1 OS... [more]
LDL2_ARATH3.589e-8561.24Lysine-specific histone demethylase 1 homolog 2 OS... [more]
LDL1_ORYSJ3.589e-8561.15Lysine-specific histone demethylase 1 homolog 1 OS... [more]
LDL2_ORYSJ2.327e-8463.39Lysine-specific histone demethylase 1 homolog 2 OS... [more]
KDM1_MOUSE1.861e-4947.93Lysine-specific histone demethylase 1 OS=Mus muscu... [more]
KDM1_HUMAN1.861e-4947.93Lysine-specific histone demethylase 1 OS=Homo sapi... [more]
LSDA_DROME2.057e-4846.85Possible lysine-specific histone demethylase 1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010C12_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T3_C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884748 ID=CV884748; Name=CV884748; organism=Citrus sinensis; type=EST; length=775bp
CAGGTACTTGCTGGGAGTCAGGTATTTGAGGGTGATATGGTACTGTGTAC
AGTTCCACTTGGGGTTTTGAAAAGCGGTTCAATTAAATTTATTCCAGAGT
TGCCTCAGAGGAAGCTTGATGCAATTAAGAGGTTGGGATATGGGTTGTTG
AATAAAGTTGCGATGCTTTTTCCTTATGTTTTTTGGGAAACAGATCTTGA
TACATTTGGGCATCTGACTGATGATTCGAGCAGTAGAGGGGAGTTCTTTC
TATTTTACAGCTATGCAACAGTTGCTGGTGGTCCTCTCTTGATTGCTTTA
GTTGCAGGAGAGGCTGCACATAAGTTTGAGAGCATGCCTCCGACAGATGC
AGTTACTAAAGTTCTTCAAATTCTTAAAGGCATATATGAACCAAAAGGAA
TCAACGTCCCAGAGCCAATCCAAACTGTTTGTACCAGATGGGGTGGTGAT
CCTTTTAGCCTGGGTTCTTACTCTAATGTTGCAGTGGGAGCGTCTGGAGA
TGATTATGATATAATGGCAGAGAGTGTGGGGGATGGAAGACTTTTCTTTG
CAGGAGAGGCCACTATTAGGCGATACCCTGCAACTATGCATGGTGCTTTT
CTTAGTGGGCTGAGGGAAACTGCAAAGATGGCTCACTGTGCTAATGCACG
AGCCTTGAGGATGAAGGTGAAGGTAGGCAAAATTCCATCAAAGAATGCCT
ATTCTTGTGCTTCTGCTCTCACTGATCTGTTCAGAGAACCTGATTTAGAA
TTTGGGAGCTTTTCTGTTATTTTTA
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