CV884742

Overview
NameCV884742
Unique NameCV884742
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length363
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884742_ssr311 microsatellite CV884742_ssr311:311..322. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12955 contig Csv1_Contig12955:133..495. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884742 vs. ExPASy Swiss-Prot
Match: ITH5_CUCMA (Inhibitor of trypsin and hageman factor OS=Cucurbita maxima PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.324e-20
Identity = 44/66 (66.67%), Postives = 53/66 (80.30%), Query Frame = 2
Query:   83 CPRKSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTKDYRIDRVRVWVNKKGKVIRVPRIG 280
            CP KSSWP LVG  G VA AIIE++NP V A++L EGTPVTKD+R +RVR+WVNK+G V+  PRIG
Sbjct:    3 CPGKSSWPHLVGVGGSVAKAIIERQNPNVKAVILEEGTPVTKDFRCNRVRIWVNKRGLVVSPPRIG 68          
BLAST of CV884742 vs. ExPASy Swiss-Prot
Match: BGIA_MOMCH (Glu S.griseus protease inhibitor OS=Momordica charantia PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.737e-16
Identity = 37/66 (56.06%), Postives = 47/66 (71.21%), Query Frame = 2
Query:   83 CPRKSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTKDYRIDRVRVWVNKKGKVIRVPRIG 280
            C  K SWP+LVG  G  A A+IE+ENP V A+++  G+PVT D+R DRVRVWV ++G V R P IG
Sbjct:    3 CQGKRSWPQLVGSTGAAAKAVIERENPRVRAVIVRVGSPVTADFRCDRVRVWVTERGIVARPPAIG 68          
BLAST of CV884742 vs. ExPASy Swiss-Prot
Match: ICI_LINUS (Proteinase inhibitor OS=Linum usitatissimum PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.010e-15
Identity = 40/65 (61.54%), Postives = 49/65 (75.38%), Query Frame = 2
Query:   83 CPRKSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTKDYRIDRVRVWVNKKGKVIRVPRI 277
            CP K++WPELVGK+G +AAA +E+EN  VHAIVL EG+ +TKD+R DRV V VN  G V  VP I
Sbjct:    4 CPGKNAWPELVGKSGNMAAATVERENRNVHAIVLKEGSAMTKDFRCDRVWVIVNDHGVVTSVPHI 68          
BLAST of CV884742 vs. ExPASy Swiss-Prot
Match: HPI_HEVBR (Protease inhibitor HPI OS=Hevea brasiliensis GN=PI1 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 8.554e-15
Identity = 38/69 (55.07%), Postives = 50/69 (72.46%), Query Frame = 2
Query:   74 AFDCPRKSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTKDYRIDRVRVWVNKKGKVIRVPRIG 280
            A  CP K+SWPELVG NG++AA II+ EN  V AIV+ EG P+T+D   +RVRV+V++   V +VP IG
Sbjct:    2 ASQCPVKNSWPELVGTNGDIAAGIIQTENANVKAIVVKEGLPITQDLNFNRVRVFVDENRVVTQVPAIG 70          
BLAST of CV884742 vs. ExPASy Swiss-Prot
Match: ATSI_AMACA (Trypsin/subtilisin inhibitor OS=Amaranthus caudatus PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.613e-13
Identity = 38/68 (55.88%), Postives = 47/68 (69.12%), Query Frame = 2
Query:   74 AFDCPRKSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTKDYRIDRVRVWVNKKGKVIRVPRI 277
            A +CP K  WPELVG+ G  AAAIIE+ENP V +IV  E +  TKD+R DRV V V+  G V+R PR+
Sbjct:    1 ARECPGKQEWPELVGEYGYKAAAIIERENPNVRSIVKHERSGFTKDFRCDRVWVVVDSTGVVVRTPRV 68          
BLAST of CV884742 vs. ExPASy Swiss-Prot
Match: ICI1_SOLPE (Wound-induced proteinase inhibitor 1 OS=Solanum peruvianum PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.752e-13
Identity = 39/83 (46.99%), Postives = 54/83 (65.06%), Query Frame = 2
Query:   50 DGPNLV--MSAFD----CPRKSSWPELVGKNGEVAAAIIEKENPCVHAI-VLLEGTPVTKDYRIDRVRVWVNKKGKVIRVPRI 277
            DGP ++  +  F+    C  K  WPEL+G     A  IIEKENP +  I +LL G+PVTKD+R DRVR++VN  G V+++PR+
Sbjct:   28 DGPEVIKLLKEFESDSRCKGKQFWPELIGVPALYAKGIIEKENPSITNIPILLNGSPVTKDFRCDRVRLFVNILGDVVQIPRV 110          
BLAST of CV884742 vs. ExPASy Swiss-Prot
Match: ICID_SOLTU (Wound-induced proteinase inhibitor 1 OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.366e-12
Identity = 35/79 (44.30%), Postives = 52/79 (65.82%), Query Frame = 2
Query:   50 DGPNLV--MSAFDCPRKSSWPELVGKNGEVAAAIIEKENPCVHAI-VLLEGTPVTKDYRIDRVRVWVNKKGKVIRVPRI 277
            DGP ++     F+C  K  WPEL+G   ++A  IIEKEN  +  + +LL G+PVT DYR +RVR++ N  G V+++PR+
Sbjct:   28 DGPEVIELQKEFECNGKQRWPELIGVPTKLAKGIIEKENSLITNVQILLNGSPVTMDYRCNRVRLFDNILGDVVQIPRV 106          
BLAST of CV884742 vs. ExPASy Swiss-Prot
Match: ICI1_SOLTU (Proteinase inhibitor 1 OS=Solanum tuberosum PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.972e-11
Identity = 35/80 (43.75%), Postives = 50/80 (62.50%), Query Frame = 2
Query:   50 DGPNLV--MSAFDCPRKSSWPELVGKNGEVAAAIIEKENPCVHAI-VLLEGTPVTKDYRIDRVRVWVNKKGKVIRVPRIG 280
            DGP ++  +  F C  K  WPEL+G   ++A  IIEKEN  +  + +LL G+PVT D R DRVR++ N  G V+ +P +G
Sbjct:   28 DGPEVIQLLKEFQCKGKLRWPELIGVPTKLAKGIIEKENSLISNVHILLNGSPVTLDIRCDRVRLFDNILGYVVDIPVVG 107          
BLAST of CV884742 vs. ExPASy Swiss-Prot
Match: ICI2_HORVU (Subtilisin-chymotrypsin inhibitor-2A OS=Hordeum vulgare PE=1 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.787e-11
Identity = 32/63 (50.79%), Postives = 44/63 (69.84%), Query Frame = 2
Query:   92 KSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTKDYRIDRVRVWVNKKGKVIRVPRIG 280
            K+ WPELVGK+ E A  +I ++ P    IVL  GT VT +YRIDRVR++V+K   + +VPR+G
Sbjct:   22 KTEWPELVGKSVEEAKKVILQDKPEAQIIVLPVGTIVTMEYRIDRVRLFVDKLDNIAQVPRVG 84          
BLAST of CV884742 vs. ExPASy Swiss-Prot
Match: ICI1_SOLLC (Wound-induced proteinase inhibitor 1 OS=Solanum lycopersicum GN=PIIF PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.787e-11
Identity = 36/81 (44.44%), Postives = 51/81 (62.96%), Query Frame = 2
Query:   50 DGPNLV--MSAFD----CPRKSSWPELVGKNGEVAAAIIEKENPCVHAI-VLLEGTPVTKDYRIDRVRVWVNKKGKVIRVP 271
            DGP ++  +  FD    C  K  WPEL+G   ++A  IIEKENP +  I +LL G+P+T DY  DRVR++ N  G V+++P
Sbjct:   28 DGPEVIELLKEFDSNLMCEGKQMWPELIGVPTKLAKEIIEKENPSITNIPILLSGSPITLDYLCDRVRLFDNILGFVVQMP 108          
The following BLAST results are available for this feature:
BLAST of CV884742 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
ITH5_CUCMA2.324e-2066.67Inhibitor of trypsin and hageman factor OS=Cucurbi... [more]
BGIA_MOMCH7.737e-1656.06Glu S.griseus protease inhibitor OS=Momordica char... [more]
ICI_LINUS1.010e-1561.54Proteinase inhibitor OS=Linum usitatissimum PE=1 S... [more]
HPI_HEVBR8.554e-1555.07Protease inhibitor HPI OS=Hevea brasiliensis GN=PI... [more]
ATSI_AMACA1.613e-1355.88Trypsin/subtilisin inhibitor OS=Amaranthus caudatu... [more]
ICI1_SOLPE2.752e-1346.99Wound-induced proteinase inhibitor 1 OS=Solanum pe... [more]
ICID_SOLTU1.366e-1244.30Wound-induced proteinase inhibitor 1 OS=Solanum tu... [more]
ICI1_SOLTU1.972e-1143.75Proteinase inhibitor 1 OS=Solanum tuberosum PE=3 S... [more]
ICI2_HORVU9.787e-1150.79Subtilisin-chymotrypsin inhibitor-2A OS=Hordeum vu... [more]
ICI1_SOLLC9.787e-1144.44Wound-induced proteinase inhibitor 1 OS=Solanum ly... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_010C09_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T3_C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884742 ID=CV884742; Name=CV884742; organism=Citrus sinensis; type=EST; length=363bp
GGAGCTTGGCTCTGAAGTCATCGTATCTGCATTGAAAGGAGTTGTGGAAG
ATGGACCAAACCTAGTCATGTCTGCATTTGATTGTCCACGCAAGAGCTCA
TGGCCAGAGCTGGTTGGTAAAAACGGGGAGGTTGCTGCTGCTATTATAGA
GAAAGAGAATCCTTGTGTTCATGCAATCGTATTACTTGAGGGAACTCCAG
TTACTAAGGACTATAGGATTGACAGGGTTCGTGTTTGGGTCAACAAGAAA
GGGAAGGTGATTAGGGTTCCTCGTATTGGTTGAATTTCCTCCATCTACTA
TCTCATAACTAATAAATAAATAAATGAAATAAGTGTTGTTGTGGGCTAAA
AAAAAAAAAAAAA
back to top