CV884740

Overview
NameCV884740
Unique NameCV884740
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length492
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8853 contig Csv1_Contig8853:2..493. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884740 vs. ExPASy Swiss-Prot
Match: ADHX_MAIZE (Alcohol dehydrogenase class-3 OS=Zea mays GN=FDH PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.021e-22
Identity = 47/59 (79.66%), Postives = 52/59 (88.14%), Query Frame = -1
Query:  316 TAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLKMQ 492
            TAFGGFKSR+QVPWLVDKYMKKEIKVDEY+THNM L +IN+AF  +H G CLRCVL MQ
Sbjct:  322 TAFGGFKSRTQVPWLVDKYMKKEIKVDEYITHNMNLADINDAFHLLHEGGCLRCVLAMQ 380          
BLAST of CV884740 vs. ExPASy Swiss-Prot
Match: ADHX_PEA (Alcohol dehydrogenase class-3 OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 8.643e-22
Identity = 46/60 (76.67%), Postives = 53/60 (88.33%), Query Frame = -1
Query:  313 TAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLKMQD 492
            TAFGGFKSRSQVPWLV+KY+KKEIKVDEY+THN+TL EIN+AF  +H G CLRCVL + D
Sbjct:  319 TAFGGFKSRSQVPWLVEKYLKKEIKVDEYITHNLTLLEINKAFDLLHEGQCLRCVLAVHD 378          
BLAST of CV884740 vs. ExPASy Swiss-Prot
Match: ADHX_ARATH (Alcohol dehydrogenase class-3 OS=Arabidopsis thaliana GN=ADH2 PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 1.474e-21
Identity = 45/56 (80.36%), Postives = 51/56 (91.07%), Query Frame = -1
Query:  325 TAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVL 492
            TAFGGFKSR+QVPWLV+KYM KEIKVDEY+THN+TLGEIN+AF  +H G CLRCVL
Sbjct:  320 TAFGGFKSRTQVPWLVEKYMNKEIKVDEYITHNLTLGEINKAFDLLHEGTCLRCVL 375          
BLAST of CV884740 vs. ExPASy Swiss-Prot
Match: ADHX_ORYSJ (Alcohol dehydrogenase class-3 OS=Oryza sativa subsp. japonica GN=Os02g0815500 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.380e-19
Identity = 43/56 (76.79%), Postives = 49/56 (87.50%), Query Frame = -1
Query:  325 TAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVL 492
            TAFGGFKSRSQVPWLV+KY+ KEIKVDEYVTH+M L +IN+AF  +H G CLRCVL
Sbjct:  322 TAFGGFKSRSQVPWLVEKYLNKEIKVDEYVTHSMNLTDINKAFDLLHEGGCLRCVL 377          
BLAST of CV884740 vs. ExPASy Swiss-Prot
Match: ADHX_ORYSI (Alcohol dehydrogenase class-3 OS=Oryza sativa subsp. indica GN=ADHIII PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.380e-19
Identity = 43/56 (76.79%), Postives = 49/56 (87.50%), Query Frame = -1
Query:  325 TAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVL 492
            TAFGGFKSRSQVPWLV+KY+ KEIKVDEYVTH+M L +IN+AF  +H G CLRCVL
Sbjct:  322 TAFGGFKSRSQVPWLVEKYLNKEIKVDEYVTHSMNLTDINKAFDLLHEGGCLRCVL 377          
BLAST of CV884740 vs. ExPASy Swiss-Prot
Match: ADHL6_ARATH (Alcohol dehydrogenase-like 6 OS=Arabidopsis thaliana GN=At5g24760 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 2.280e-14
Identity = 34/58 (58.62%), Postives = 44/58 (75.86%), Query Frame = -1
Query:  319 TAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLKM 492
            T FGG+K +S +P L+DKYM KEI +DE++THN++  EIN+AF  M  G CLRCVL M
Sbjct:  322 TLFGGWKPKSDLPSLIDKYMNKEIMIDEFITHNLSFDEINKAFVLMREGKCLRCVLHM 379          
BLAST of CV884740 vs. ExPASy Swiss-Prot
Match: ADHX_MOUSE (Alcohol dehydrogenase class-3 OS=Mus musculus GN=Adh5 PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 4.299e-13
Identity = 35/58 (60.34%), Postives = 44/58 (75.86%), Query Frame = -1
Query:  319 TAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLKM 492
            TAFGG+KS   VP LV +YM K+IKVDE+VT N++  +IN+AF  MH GD +R VLKM
Sbjct:  317 TAFGGWKSVESVPKLVSEYMSKKIKVDEFVTGNLSFDQINQAFDLMHSGDSIRTVLKM 374          
BLAST of CV884740 vs. ExPASy Swiss-Prot
Match: ADHX_HUMAN (Alcohol dehydrogenase class-3 OS=Homo sapiens GN=ADH5 PE=1 SV=4)

HSP 1 Score: 73.9442 bits (180), Expect = 4.299e-13
Identity = 34/58 (58.62%), Postives = 44/58 (75.86%), Query Frame = -1
Query:  319 TAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLKM 492
            TAFGG+KS   VP LV +YM K+IKVDE+VTHN++  EIN+AF  MH G  +R V+K+
Sbjct:  317 TAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSFDEINKAFELMHSGKSIRTVVKI 374          
BLAST of CV884740 vs. ExPASy Swiss-Prot
Match: ADHX_UROHA (Alcohol dehydrogenase class-3 OS=Uromastyx hardwickii PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.578e-13
Identity = 34/57 (59.65%), Postives = 42/57 (73.68%), Query Frame = -1
Query:  322 TAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLK 492
            TAFGG+KS   VP LVD+YM K++KVDE+VTH +   +INEAF  MH G  +R VLK
Sbjct:  316 TAFGGWKSVESVPKLVDEYMSKKMKVDEFVTHTLPFEQINEAFELMHAGKSIRSVLK 372          
BLAST of CV884740 vs. ExPASy Swiss-Prot
Match: ADHX_HORSE (Alcohol dehydrogenase class-3 OS=Equus caballus GN=ADH5 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.251e-12
Identity = 32/58 (55.17%), Postives = 44/58 (75.86%), Query Frame = -1
Query:  319 TAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLKM 492
            TAFGG+KS   +P LV +YM K+IKVDE+VTH+++  +INEAF  MH G  +R V+K+
Sbjct:  317 TAFGGWKSVESIPKLVSEYMSKKIKVDEFVTHSLSFDQINEAFELMHAGKSIRTVVKL 374          
The following BLAST results are available for this feature:
BLAST of CV884740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
ADHX_MAIZE1.021e-2279.66Alcohol dehydrogenase class-3 OS=Zea mays GN=FDH P... [more]
ADHX_PEA8.643e-2276.67Alcohol dehydrogenase class-3 OS=Pisum sativum PE=... [more]
ADHX_ARATH1.474e-2180.36Alcohol dehydrogenase class-3 OS=Arabidopsis thali... [more]
ADHX_ORYSJ1.380e-1976.79Alcohol dehydrogenase class-3 OS=Oryza sativa subs... [more]
ADHX_ORYSI1.380e-1976.79Alcohol dehydrogenase class-3 OS=Oryza sativa subs... [more]
ADHL6_ARATH2.280e-1458.62Alcohol dehydrogenase-like 6 OS=Arabidopsis thalia... [more]
ADHX_MOUSE4.299e-1360.34Alcohol dehydrogenase class-3 OS=Mus musculus GN=A... [more]
ADHX_HUMAN4.299e-1358.62Alcohol dehydrogenase class-3 OS=Homo sapiens GN=A... [more]
ADHX_UROHA9.578e-1359.65Alcohol dehydrogenase class-3 OS=Uromastyx hardwic... [more]
ADHX_HORSE1.251e-1255.17Alcohol dehydrogenase class-3 OS=Equus caballus GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010C08_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T3_C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884740 ID=CV884740; Name=CV884740; organism=Citrus sinensis; type=EST; length=492bp
TTTTTTTTTTTGGTAAACAAACCCCAGACAACCTTCAGGGATCCATAAAT
GTTATTCTGAAAGCTACTGCAGCAGCAGATAGTTCATACTTCATAGACAA
CACATTTATTATTGTGATGCAAGTCCTTAGCAATATGCTGCTTAATAAAG
TTGAATAGAAACATTTTTGCTGCAACACATGCCAAACTATCTCACATTAG
AGTAGTTTTCTTCACACACTCACAGTTTGCACATAAAAGGATGCAATTAC
CATGTAAACACCAAAATATACCATTTCATAAGAACTAATGCAGGGCTCAA
TAGATCCTCTCAATCCTGCATTTTAAGCACACAGCGTAGGCAGTCCCCTC
CATGCATATAACGGAATGCCTCGTTGATCTCCCCAAGAGTCATATTGTGA
GTTACGTACTCATCAACCTTAATTTCCTTCTTCATGTACTTGTCTACAAG
CCAAGGCACTTGTGAACGGCTCTTGAAACCACCAAAAGCTGT
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