CV884737

Overview
NameCV884737
Unique NameCV884737
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig591 contig Csv1_Contig591:383..1233. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884737 vs. ExPASy Swiss-Prot
Match: HYES_HUMAN (Epoxide hydrolase 2 OS=Homo sapiens GN=EPHX2 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.465e-13
Identity = 63/223 (28.25%), Postives = 108/223 (48.43%), Query Frame = -3
Query:  208 VAKDFGALTAYMFAIQHQERVSGVITLGVPILPPGP----IEFHKYLPEGFYISRWQEPGRAEADFGRLDAKTVVRNIYILFSRSEIPIAPENK--EIMDLVSDSTPLPP---WFTEEDLAAYGALYEKSGFRTALQVPYRTLRENFSTPEVTA---VKVPALLIMGDKDYFLKFPGIEDYIRSGKAKDLVPNLEIIHLPEGSHFVQEQSPEEVNQLILTFLN 840
            +  D+G +  +  A+ + ERV  V +L  P +P  P    +E  K  P   Y   +QEPG AEA+      + + R    LF  S+  +   +K  E   L  +S   P      TEE++  Y   ++KSGFR  L   YR +  N+     +    + +PAL++  +KD+ L  P +  ++     +D +P+L+  H+ +  H+ Q   P EVNQ+++ +L+
Sbjct:  332 IGHDWGGMLVWYMALFYPERVRAVASLNTPFIPANPNMSPLESIKANPVFDYQLYFQEPGVAEAEL----EQNLSRTFKSLFRASDESVLSMHKVCEAGGLFVNSPEEPSLSRMVTEEEIQFYVQQFKKSGFRGPLNW-YRNMERNWKWACKSLGRKILIPALMVTAEKDFVL-VPQMSQHM-----EDWIPHLKRGHIEDCGHWTQMDKPTEVNQILIKWLD 543          
BLAST of CV884737 vs. ExPASy Swiss-Prot
Match: HYES_RAT (Epoxide hydrolase 2 OS=Rattus norvegicus GN=Ephx2 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.270e-13
Identity = 66/231 (28.57%), Postives = 109/231 (47.19%), Query Frame = -3
Query:  187 VAKDFGALTAYMFAIQHQERVSGVITLGVPILPP----GPIEFHKYLPEGFYISRWQEPGRAEADFGRLDAKTVVRNIYILFSRS-EIPIAPENKEI-MDLVSDSTPLPPWF----TEEDLAAYGALYEKSGFRTALQVPYRTLRENFS---TPEVTAVKVPALLIMGDKDYFLKFPGIEDYIRSGKAKDLVPNLEIIHLPEGSHFVQEQSPEEVNQLILTFLNKHV*LPA 840
            +  D+  +  +  A+ H ERV  V +L  P++PP     P+E  + +P   Y   +QEPG AEA+      K + R     F  S ++ +   NK   M  +   TP  P      TEE++  Y   ++KSGFR  L   YR    N+          + VPAL++  +KD  L+ P +     S   ++ +P L+  H+ +  H+ Q + P EVNQ+++ +L   +  P+
Sbjct:  330 IGHDWAGVLVWNMALFHPERVRAVASLNTPLMPPNPEVSPMEVIRSIPVFNYQLYFQEPGVAEAEL----EKNMSRTFKSFFRTSDDMGLLTVNKATEMGGILVGTPEDPKVSKITTEEEIEYYIQQFKKSGFRGPLNW-YRNTERNWKWSCKALGRKILVPALMVTAEKDIVLR-PEM-----SKNMENWIPFLKRGHIEDCGHWTQIEKPAEVNQILIKWLKTEIQNPS 549          
BLAST of CV884737 vs. ExPASy Swiss-Prot
Match: HYES_MOUSE (Epoxide hydrolase 2 OS=Mus musculus GN=Ephx2 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 5.210e-11
Identity = 62/231 (26.84%), Postives = 105/231 (45.45%), Query Frame = -3
Query:  187 VAKDFGALTAYMFAIQHQERVSGVITLGVPILPP----GPIEFHKYLPEGFYISRWQEPGRAEADFGRLDAKTVVRNIYILFSRSE------IPIAPENKEIMDLVSDSTPLPPWFTEEDLAAYGALYEKSGFRTALQVPYRTLRENFS---TPEVTAVKVPALLIMGDKDYFLKFPGIEDYIRSGKAKDLVPNLEIIHLPEGSHFVQEQSPEEVNQLILTFLNKHV*LPA 840
            +  D+  +  +  A+ + ERV  V +L  P +PP     P++  + +P   Y   +QEPG AEA+      K + R     F  S+      +  A E   I+    +   L    TEE++  Y   ++K+GFR  L   YR    N+          + VPAL++  +KD  L+ P +     S   +  +P L+  H+ +  H+ Q + P EVNQ+++ +L   V  P+
Sbjct:  330 IGHDWAGVMVWNMALFYPERVRAVASLNTPFMPPDPDVSPMKVIRSIPVFNYQLYFQEPGVAEAEL----EKNMSRTFKSFFRASDETGFIAVHKATEIGGILVNTPEDPNLSKITTEEEIEFYIQQFKKTGFRGPLNW-YRNTERNWKWSCKGLGRKILVPALMVTAEKDIVLR-PEM-----SKNMEKWIPFLKRGHIEDCGHWTQIEKPTEVNQILIKWLQTEVQNPS 549          
The following BLAST results are available for this feature:
BLAST of CV884737 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
HYES_HUMAN1.465e-1328.25Epoxide hydrolase 2 OS=Homo sapiens GN=EPHX2 PE=1 ... [more]
HYES_RAT7.270e-1328.57Epoxide hydrolase 2 OS=Rattus norvegicus GN=Ephx2 ... [more]
HYES_MOUSE5.210e-1126.84Epoxide hydrolase 2 OS=Mus musculus GN=Ephx2 PE=1 ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010C06_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T7_C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884737 ID=CV884737; Name=CV884737; organism=Citrus sinensis; type=EST; length=851bp
TTTCTATATATTGTTCATGGCATCTGAAAAGATCATATTAATCACATGCC
AAATTAAGTCACATACATTCACCACTACTAAATAATAACACAGAGAGCGA
TTGTTCAAGCAACATAGACTAGACATAATTCTAGGGGACTCGCATAATCT
CCAGCAAACCCTTAAGACATACAGCAAGAAAGCCTTGGCTGGCAATCAAA
CATGTTTGTTGAGAAAGGTGAGGATTAGCTGGTTCACTTCTTCTGGTGAT
TGCTCTTGAACAAAATGGCTCCCTTCAGGCAAATGTATGATCTCCAAATT
GGGCACAAGGTCTTTCGCTTTGCCGCTTCTTATGTAGTCCTCAATCCCTG
GAAATTTGAGGAAATAGTCTTTGTCCCCCATTATCAGTAATGCTGGAACT
TTAACTGCTGTCACTTCCGGTGTGCTGAAGTTTTCACGAAGGGTCCTATA
TGGAACTTGCAATGCAGTTCGAAATCCAGACTTCTCATACAAGGCTCCAT
AAGCTGCGAGATCTTCCTCCGTGAACCAAGGTGGCAGAGGAGTTGAATCA
CTCACCAAATCCATGATCTCTTTGTTTTCAGGTGCTATGGGTATTTCACT
TCTGGAGAAGAGTATGTAAATGTTCCTTACAACTGTCTTGGCATCAAGGC
GGCCAAAATCAGCTTCTGCTCGTCCAGGTTCCTGCCATCTTGATATGTAA
AAACCTTCAGGAAGGTATTTGTGGAATTCAATCGGACCAGGAGGTAAAAT
TGGCACTCCCAAGGTAATTACCCCAGAGACCCTCTCTTGGTGTTGAATTG
CAAACATGTATGCAGTCAGAGCTCCAAAATCTTTTGCAACAAGAAAAACC
T
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