CX043430

Overview
NameCX043430
Unique NameCX043430
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6148 contig Csv1_Contig6148:63..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043430 vs. ExPASy Swiss-Prot
Match: CLH1_CITUN (Chlorophyllase-1, chloroplastic OS=Citrus unshiu PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.155e-50
Identity = 115/219 (52.51%), Postives = 138/219 (63.01%), Query Frame = 1
Query:    1 SKPV-SVEAKPGLATALLSVFSSGPYSPKLKTVNKPWFNSFPP-KPLNIVYPEEKGTYEVILFFHGTALSNTSYSNLLDHLASHGYIVVAPQLYDFL-PPKGNGEVNDAANVLNWLSTGLQSELPENVEANLNYVALMGHSRGGLIAFGLALGYATNPPVSIKISALVGIDPVAGLASVHSELEPPILSHDSXEFSIPXXXXXXXXXXXXKCMQPCAPE 648
            SKP  SV+  P LATA L VF+ G YS K  T+     +S PP KPL IV P EKGT+ VILF HGT+LSN SYS + DH+ASHG+IVVAPQLY  + PP    E+N AA V  WL  GLQ  LPEN EAN++ VA+MGHSRGG  AF L+L Y           A++G+DPVAG  S  + L+P ILS DS +FSIP            +C+  CAPE
Sbjct:    7 SKPAASVQGTPLLATATLPVFTRGIYSTKRITLETSSPSSPPPPKPLIIVTPAEKGTFNVILFLHGTSLSNKSYSKIFDHIASHGFIVVAPQLYTSIPPPSATNELNSAAEVAEWLPQGLQQNLPENTEANVSLVAVMGHSRGGQTAFALSLRYG--------FGAVIGLDPVAG-TSKTTGLDPSILSFDSFDFSIPVTVIGTGLGGVARCITACAPE 216          
BLAST of CX043430 vs. ExPASy Swiss-Prot
Match: CLH1_CITSI (Chlorophyllase-1, chloroplastic OS=Citrus sinensis GN=CHLASE1 PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.111e-49
Identity = 113/219 (51.60%), Postives = 137/219 (62.56%), Query Frame = 1
Query:    1 SKPV-SVEAKPGLATALLSVFSSGPYSPKLKTVNKPWFNSFPP-KPLNIVYPEEKGTYEVILFFHGTALSNTSYSNLLDHLASHGYIVVAPQLYDFL-PPKGNGEVNDAANVLNWLSTGLQSELPENVEANLNYVALMGHSRGGLIAFGLALGYATNPPVSIKISALVGIDPVAGLASVHSELEPPILSHDSXEFSIPXXXXXXXXXXXXKCMQPCAPE 648
            +KP  SV+  P LATA L VF+ G YS K  T+     +S PP KPL IV P  KGT+ VILF HGT+LSN SYS + DH+ASHG+IVVAPQLY  + PP    E+N AA V  WL  GLQ  LPEN EAN++ VA+MGHSRGG  AF L+L Y           A++G+DPVAG  S  + L+P ILS DS +FSIP            +C+  CAPE
Sbjct:    7 AKPAASVQGTPLLATATLPVFTRGIYSTKRITLETSSPSSPPPPKPLIIVTPAGKGTFNVILFLHGTSLSNKSYSKIFDHIASHGFIVVAPQLYTSIPPPSATNELNSAAEVAEWLPQGLQQNLPENTEANVSLVAVMGHSRGGQTAFALSLRYG--------FGAVIGLDPVAG-TSKTTGLDPSILSFDSFDFSIPVTVIGTGLGGVARCITACAPE 216          
BLAST of CX043430 vs. ExPASy Swiss-Prot
Match: CLH1_ARATH (Chlorophyllase-1 OS=Arabidopsis thaliana GN=CLH1 PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.235e-39
Identity = 88/178 (49.44%), Postives = 112/178 (62.92%), Query Frame = 1
Query:  121 PPKPLNIVYPEEKGTYEVILFFHGTALSNTSYSNLLDHLASHGYIVVAPQLYDFLPPKGNGEVNDAANVLNWLSTGLQSELPENVEANLNYVALMGHSRGGLIAFGLALGYATNPPVSIKISALVGIDPVAGLASVHSELEPPILSH--DSXEFSIP-XXXXXXXXXXXXKCMQPCAP 645
            PPKP+ I  P   GTY V+LFFHG  L N  YS++L+H+ASHGYI+VAPQL   LPP G  EV+DA +V+NW S  L++ LP +V AN  Y +L+GHSRGG  AF +ALG+A     SI  SAL+GIDPVAG  + +   +P IL++  +S E  IP               M PCAP
Sbjct:   41 PPKPVRITCPTVAGTYPVVLFFHGFYLRNYFYSDVLNHIASHGYILVAPQLCKLLPPGGQVEVDDAGSVINWASENLKAHLPTSVNANGKYTSLVGHSRGGKTAFAVALGHAATLDPSITFSALIGIDPVAG-TNKYIRTDPHILTYKPESFELDIPVAVVGTGLGPKWNNVMPPCAP 217          
BLAST of CX043430 vs. ExPASy Swiss-Prot
Match: CLH0_CHEAL (Chlorophyllase type 0 OS=Chenopodium album GN=CACLH PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.518e-30
Identity = 75/185 (40.54%), Postives = 107/185 (57.84%), Query Frame = 1
Query:   46 LLSVFSSGPYSPKLKTVNKPWFNSFPPKPLNIVYPEEKGTYEVILFFHGTALSNTSYSNLLDHLASHGYIVVAPQLYDFLPPK---GNGEVNDAANVLNWLSTGLQSELPE---NVEANLNYVALMGHSRGGLIAFGLALGYATNPPVSIKISALVGIDPVAGLASVHSELEPPILSHDSXEFSI 582
            +  VF  G +      +    +    P+PL I+ P+E G Y V+LF HGT LSN  YS   +++ASHG+IVVAP+L+   PPK      E++ AA+V NW+   LQ  L      VE +L  +A+ GHSRGG  AF LALG+ +N  + +  SAL+G+DPVAG  SV     P +L++    F++
Sbjct:   34 ITDVFHKGNFQVTNNPIRVKRYEFSAPEPLIIISPKEAGVYPVLLFIHGTMLSNEDYSLFFNYIASHGFIVVAPKLFRLFPPKLPSQQDEIDMAASVANWMPLYLQVVLQRYVTGVEGDLEKLAISGHSRGGKSAFALALGF-SNIKLDVTFSALIGVDPVAG-RSVDDRTLPHVLTYKPNSFNL 216          
BLAST of CX043430 vs. ExPASy Swiss-Prot
Match: CLH2_ARATH (Chlorophyllase-2, chloroplastic OS=Arabidopsis thaliana GN=CLH2 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.097e-29
Identity = 68/157 (43.31%), Postives = 94/157 (59.87%), Query Frame = 1
Query:  121 PPKPLNIVYPEEKGTYEVILFFHGTALSNTSYSNLLDHLASHGYIVVAPQLYDFLPPKGNGEVNDAANVLNWLSTGLQSELPENVEANLNYVALMGHSRGGLIAFGLAL---GYATNPPVSIKISALVGIDPVAGLASVHSELEPPILSHDSXEFSI 582
            PPK L +  P E+G Y V++  HG  L N+ YS L+ H++SHG+I++APQLY    P    E+   A +++WLS GL   LP  V  NL+  AL GHSRGG  AF +AL   GY++N    +KIS L+GIDPV G      +  PP+L++    F +
Sbjct:   41 PPKQLLVATPVEEGDYPVVMLLHGYLLYNSFYSQLMLHVSSHGFILIAPQLYSIAGPDTMDEIKSTAEIMDWLSVGLNHFLPAQVTPNLSKFALSGHSRGGKTAFAVALKKFGYSSN----LKISTLIGIDPVDGTGK-GKQTPPPVLAYLPNSFDL 192          
The following BLAST results are available for this feature:
BLAST of CX043430 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CLH1_CITUN2.155e-5052.51Chlorophyllase-1, chloroplastic OS=Citrus unshiu P... [more]
CLH1_CITSI3.111e-4951.60Chlorophyllase-1, chloroplastic OS=Citrus sinensis... [more]
CLH1_ARATH2.235e-3949.44Chlorophyllase-1 OS=Arabidopsis thaliana GN=CLH1 P... [more]
CLH0_CHEAL5.518e-3040.54Chlorophyllase type 0 OS=Chenopodium album GN=CACL... [more]
CLH2_ARATH2.097e-2943.31Chlorophyllase-2, chloroplastic OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_11A07_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-11A07-A13-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043430 ID=CX043430; Name=CX043430; organism=Citrus sinensis; type=EST; length=656bp
AGCAAGCCCGTCTCCGTTGAAGCTAAGCCTGGTTTGGCAACGGCCTTACT
ATCAGTTTTTTCAAGTGGACCTTATTCCCCGAAACTCAAGACAGTGAATA
AACCATGGTTTAATAGTTTTCCTCCAAAGCCGTTGAATATTGTTTATCCA
GAAGAAAAAGGAACATATGAAGTTATTTTGTTTTTCCACGGCACTGCTCT
CAGCAACACAAGCTATTCCAATCTCTTAGACCACTTGGCTTCCCATGGAT
ACATCGTTGTTGCCCCTCAGTTATACGATTTTCTGCCGCCGAAAGGAAAC
GGAGAAGTTAACGATGCAGCAAACGTCCTCAACTGGTTATCAACAGGCCT
TCAATCAGAACTCCCGGAAAATGTTGAAGCTAACCTAAACTACGTTGCTC
TTATGGGACACAGTCGCGGAGGACTAATAGCGTTCGGTCTGGCACTTGGC
TATGCAACAAATCCTCCAGTTAGCATTAAAATTTCAGCATTAGTAGGCAT
AGACCCAGTTGCGGGGTTAGCCAGCGTTCATAGTGAACTTGAACCCCCGA
TTCTCAGTCATGACTCANTCGAGTTCTCAATTCCTGTTACTGTAATTGGC
ACCGGACTCGGTGGTGTGACAAAGTGCATGCAGCCTTGTGCACCGGAAAA
CAAAAA
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