CV884736

Overview
NameCV884736
Unique NameCV884736
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length551
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884736_ssr501 microsatellite CV884736_ssr501:501..512. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10186 contig Csv1_Contig10186:183..732. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884736 vs. ExPASy Swiss-Prot
Match: SLU7A_ARATH (Pre-mRNA-splicing factor SLU7-A OS=Arabidopsis thaliana GN=At1g65660 PE=1 SV=2)

HSP 1 Score: 298.13 bits (762), Expect = 1.812e-80
Identity = 134/154 (87.01%), Postives = 148/154 (96.10%), Query Frame = 3
Query:    3 QIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSEKPSLKHQRKWKSDPNYTKSWYDRGAKVFHAEKYRKGACANCGAMTHDAKSCMERPRKMGAKWTNINIAPDEKIETFELDYDGKRDRWNGYDTSSYARVVERYEARDDARRKF 464
            QIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSEKPSLKHQRKWKSDPNYTKSWYDRGAK+F AEKYRKGAC NCGAMTH AK+CM+RPRK+GAK+TN+NIAPDEKIE+FELDYDGKRDRWNGYD S+Y RV++ YEA++DAR+K+
Sbjct:   17 QIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSEKPSLKHQRKWKSDPNYTKSWYDRGAKIFQAEKYRKGACQNCGAMTHTAKACMDRPRKIGAKYTNMNIAPDEKIESFELDYDGKRDRWNGYDPSTYHRVIDLYEAKEDARKKY 170          
BLAST of CV884736 vs. ExPASy Swiss-Prot
Match: SLU7_ORYSJ (Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp. japonica GN=Os08g0127700 PE=2 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 1.534e-79
Identity = 131/154 (85.06%), Postives = 144/154 (93.51%), Query Frame = 3
Query:    3 QIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSEKPSLKHQRKWKSDPNYTKSWYDRGAKVFHAEKYRKGACANCGAMTHDAKSCMERPRKMGAKWTNINIAPDEKIETFELDYDGKRDRWNGYDTSSYARVVERYEARDDARRKF 464
            Q+ELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLN++KPSLKHQR WKSDPNYTKSWYDRGAK+F A KYRKGAC NCGAMTHD KSCMERPR +GAKWTNINIAPDEK+E+FELDYDGKRDRWNGYD S+Y RV+  YEAR++AR+K+
Sbjct:   17 QLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNADKPSLKHQRNWKSDPNYTKSWYDRGAKLFQANKYRKGACENCGAMTHDKKSCMERPRSVGAKWTNINIAPDEKVESFELDYDGKRDRWNGYDPSTYTRVIADYEAREEARKKY 170          
BLAST of CV884736 vs. ExPASy Swiss-Prot
Match: SLU7_ORYSI (Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp. indica GN=OsI_27673 PE=3 SV=2)

HSP 1 Score: 295.049 bits (754), Expect = 1.534e-79
Identity = 131/154 (85.06%), Postives = 144/154 (93.51%), Query Frame = 3
Query:    3 QIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSEKPSLKHQRKWKSDPNYTKSWYDRGAKVFHAEKYRKGACANCGAMTHDAKSCMERPRKMGAKWTNINIAPDEKIETFELDYDGKRDRWNGYDTSSYARVVERYEARDDARRKF 464
            Q+ELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLN++KPSLKHQR WKSDPNYTKSWYDRGAK+F A KYRKGAC NCGAMTHD KSCMERPR +GAKWTNINIAPDEK+E+FELDYDGKRDRWNGYD S+Y RV+  YEAR++AR+K+
Sbjct:   17 QLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNADKPSLKHQRNWKSDPNYTKSWYDRGAKLFQANKYRKGACENCGAMTHDKKSCMERPRSVGAKWTNINIAPDEKVESFELDYDGKRDRWNGYDPSTYTRVIADYEAREEARKKY 170          
BLAST of CV884736 vs. ExPASy Swiss-Prot
Match: SLU7B_ARATH (Pre-mRNA-splicing factor SLU7-B OS=Arabidopsis thaliana GN=At4g37120 PE=2 SV=3)

HSP 1 Score: 264.233 bits (674), Expect = 2.900e-70
Identity = 115/154 (74.68%), Postives = 139/154 (90.26%), Query Frame = 3
Query:    3 QIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSEKPSLKHQRKWKSDPNYTKSWYDRGAKVFHAEKYRKGACANCGAMTHDAKSCMERPRKMGAKWTNINIAPDEKIETFELDYDGKRDRWNGYDTSSYARVVERYEARDDARRKF 464
            ++ELEEARKAGLAPAEVDEDGKEINPHIP+YMS APWYL SE+PSLKHQ+ WK +P   K WYDRG K++ AE+YRKGAC NCGAMTH +K+CM+RPRK+GAK+TN+NIA DEKIE+FELDYDGKRDRWNGYDTS+Y  VV+RY+A+++AR+K+
Sbjct:   17 KLELEEARKAGLAPAEVDEDGKEINPHIPEYMSKAPWYLKSEQPSLKHQKNWKIEPEPKKIWYDRGKKIYQAEQYRKGACINCGAMTHSSKACMDRPRKIGAKYTNMNIAADEKIESFELDYDGKRDRWNGYDTSTYRHVVDRYDAKEEARKKY 170          
BLAST of CV884736 vs. ExPASy Swiss-Prot
Match: SLU7_CRYNE (Pre-mRNA-splicing factor SLU7 OS=Cryptococcus neoformans GN=SLU7 PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.146e-50
Identity = 95/156 (60.90%), Postives = 115/156 (73.72%), Query Frame = 3
Query:    3 QIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSEKPSLKHQRKWKSDPNYT-KSWYDRGAKVFHA-EKYRKGACANCGAMTHDAKSCMERPRKMGAKWTNINIAPDEKIETFELDYDGKRDRWNGYDTSSYARVVERYEARDDARRKF 464
            Q +LE ARKAG APA +DE G  INPHIP+Y++ APWY ++ +PSL HQR  +  P+     WYDRGAK   A +KYRKGAC NCGAMTH  K C+ERPRK GAK+TN +IAPDE ++ FE DYD KRDRWNGYD +SY  VVE YEA +  R+K+
Sbjct:   21 QKDLEAARKAGTAPAALDEQGNAINPHIPEYITKAPWYADTGRPSLAHQRINEQGPHLKLDEWYDRGAKAGPAAKKYRKGACENCGAMTHKMKDCVERPRKRGAKFTNKDIAPDELVQQFEGDYDAKRDRWNGYDPASYKHVVEEYEATEQMRKKY 176          
BLAST of CV884736 vs. ExPASy Swiss-Prot
Match: SLU7_DICDI (Pre-mRNA-splicing factor slu7 OS=Dictyostelium discoideum GN=slu7 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 9.699e-50
Identity = 96/152 (63.16%), Postives = 112/152 (73.68%), Query Frame = 3
Query:    9 ELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSEKPSLKHQRKWKSDPNYTKSWYDRGAKVFHAE-KYRKGACANCGAMTHDAKSCMERPRKMGAKWTNINIAPDEKIETFELDYDGKRDRWNGYDTSSYARVVERYEARDDARRK 461
            EL+EARKAG APAE+DE+GKEINPHIP+Y+  APWYLN+ KPSLKHQR   +     K WY RGA    A  K+RKGAC NCGAMTH  K C ERPRK+GAK+TN +I PDE I+  ELDYD KRD +NGYD SSY  V++ YE  D  R+K
Sbjct:   19 ELDEARKAGNAPAELDEEGKEINPHIPEYILKAPWYLNANKPSLKHQRG-VTKKEMDKGWYLRGATTGEAATKFRKGACENCGAMTHKTKDCCERPRKLGAKFTNDDIKPDEVIQKLELDYDSKRDPYNGYDPSSYKEVMDIYEKADTERKK 169          
BLAST of CV884736 vs. ExPASy Swiss-Prot
Match: SLU7_CHICK (Pre-mRNA-splicing factor SLU7 OS=Gallus gallus GN=SLU7 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.004e-46
Identity = 92/156 (58.97%), Postives = 114/156 (73.08%), Query Frame = 3
Query:    9 ELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLN-SEKPSLKHQRKW-KSDPNYTKS--WYDRGAKVFH-AEKYRKGACANCGAMTHDAKSCMERPRKMGAKWTNINIAPDEKIE-TFELDYDGKRDRWNGYDTSSYARVVERYEARDDARR 458
            ELEE RK G APAEVDE+GK+INPHIPQY+SS PWY++ S++P+LKHQR   +    Y+ S  WY RG K    A +YRKGAC NCGA+TH  K CMERPRK+GAK+T +NIAPDE ++     DYDGKRDRWNGY+   + ++VE Y   D A+R
Sbjct:   36 ELEEQRKLGNAPAEVDEEGKDINPHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQYSSSGDWYKRGVKEHSIATRYRKGACENCGALTHKKKDCMERPRKVGAKYTGMNIAPDEHVQPQLMFDYDGKRDRWNGYNPEEHMKIVEEYAKVDLAKR 191          
BLAST of CV884736 vs. ExPASy Swiss-Prot
Match: SLU7_BOVIN (Pre-mRNA-splicing factor SLU7 OS=Bos taurus GN=SLU7 PE=2 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 1.893e-45
Identity = 91/156 (58.33%), Postives = 111/156 (71.15%), Query Frame = 3
Query:    9 ELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLN-SEKPSLKHQRKW-KSDPNYTKS--WYDRGAKVFH-AEKYRKGACANCGAMTHDAKSCMERPRKMGAKWTNINIAPDEKIE-TFELDYDGKRDRWNGYDTSSYARVVERYEARDDARR 458
            ELEE RK G APAEVDE+GK+INPHIPQY+SS PWY++ S++P+LKHQR   +    Y+ S  WY RG K      KYRKGAC NCGAMTH  K C ERPR++GAK+T  NIAPDE ++     DYDGKRDRWNGY+   + ++VE Y   D A+R
Sbjct:   38 ELEEQRKLGNAPAEVDEEGKDINPHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQYSSSGEWYKRGVKENSITTKYRKGACENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEHVQPQLMFDYDGKRDRWNGYNPEEHMKIVEEYAKVDLAKR 193          
BLAST of CV884736 vs. ExPASy Swiss-Prot
Match: SLU7_RAT (Pre-mRNA-splicing factor SLU7 OS=Rattus norvegicus GN=Slu7 PE=2 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 3.229e-45
Identity = 91/156 (58.33%), Postives = 108/156 (69.23%), Query Frame = 3
Query:    9 ELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLN-SEKPSLKHQRKWKSDPNYTKS---WYDRGAKVFH-AEKYRKGACANCGAMTHDAKSCMERPRKMGAKWTNINIAPDEKIE-TFELDYDGKRDRWNGYDTSSYARVVERYEARDDARR 458
            ELEE RK G APAEVDE+GK+INPHIPQY+SS PWY++ S++P+LKHQR          S   WY RG K      KYRKGAC NCGAMTH  K C ERPR++GAK+T  NIAPDE I+     DYDGKRDRWNGY+   + ++VE Y   D A+R
Sbjct:   38 ELEEQRKLGNAPAEVDEEGKDINPHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQFSSSGEWYKRGVKENSITTKYRKGACENCGAMTHKRKDCFERPRRVGAKFTGTNIAPDEHIQPQLMFDYDGKRDRWNGYNPEEHMKIVEEYAKVDLAKR 193          
BLAST of CV884736 vs. ExPASy Swiss-Prot
Match: SLU7_MOUSE (Pre-mRNA-splicing factor SLU7 OS=Mus musculus GN=Slu7 PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 4.217e-45
Identity = 90/156 (57.69%), Postives = 108/156 (69.23%), Query Frame = 3
Query:    9 ELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLN-SEKPSLKHQRKWKSDPNYTKS---WYDRGAKVFH-AEKYRKGACANCGAMTHDAKSCMERPRKMGAKWTNINIAPDEKIE-TFELDYDGKRDRWNGYDTSSYARVVERYEARDDARR 458
            ELEE RK G APAEVDE+GK+INPHIPQY+SS PWY++ S++P+LKHQR          S   WY RG K      KYRKGAC NCGAMTH  K C ERPR++GAK+T  NIAPDE ++     DYDGKRDRWNGY+   + ++VE Y   D A+R
Sbjct:   38 ELEEQRKLGNAPAEVDEEGKDINPHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQFSSSGEWYKRGVKENSITTKYRKGACENCGAMTHKRKDCFERPRRVGAKFTGTNIAPDEHVQPQLMFDYDGKRDRWNGYNPEEHMKIVEEYAKVDLAKR 193          
The following BLAST results are available for this feature:
BLAST of CV884736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
SLU7A_ARATH1.812e-8087.01Pre-mRNA-splicing factor SLU7-A OS=Arabidopsis tha... [more]
SLU7_ORYSJ1.534e-7985.06Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subs... [more]
SLU7_ORYSI1.534e-7985.06Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subs... [more]
SLU7B_ARATH2.900e-7074.68Pre-mRNA-splicing factor SLU7-B OS=Arabidopsis tha... [more]
SLU7_CRYNE1.146e-5060.90Pre-mRNA-splicing factor SLU7 OS=Cryptococcus neof... [more]
SLU7_DICDI9.699e-5063.16Pre-mRNA-splicing factor slu7 OS=Dictyostelium dis... [more]
SLU7_CHICK1.004e-4658.97Pre-mRNA-splicing factor SLU7 OS=Gallus gallus GN=... [more]
SLU7_BOVIN1.893e-4558.33Pre-mRNA-splicing factor SLU7 OS=Bos taurus GN=SLU... [more]
SLU7_RAT3.229e-4558.33Pre-mRNA-splicing factor SLU7 OS=Rattus norvegicus... [more]
SLU7_MOUSE4.217e-4557.69Pre-mRNA-splicing factor SLU7 OS=Mus musculus GN=S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010C06_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T3_C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884736 ID=CV884736; Name=CV884736; organism=Citrus sinensis; type=EST; length=551bp
AGCAGATTGAATTAGAAGAGGCACGTAAAGCTGGGCTTGCCCCAGCTGAG
GTTGACGAGGATGGAAAAGAAATCAATCCTCATATTCCACAGTATATGTC
ATCTGCTCCATGGTATCTCAATTCTGAGAAACCTAGTTTGAAACATCAAA
GGAAATGGAAGTCGGATCCAAATTACACTAAATCGTGGTATGACAGGGGT
GCAAAAGTATTCCATGCTGAGAAATACCGCAAGGGTGCATGTGCAAATTG
TGGAGCCATGACGCATGATGCAAAGTCATGCATGGAAAGACCTCGAAAAA
TGGGGGCAAAGTGGACGAATATAAACATTGCACCTGATGAAAAAATTGAG
ACCTTTGAGCTTGATTATGATGGAAAGCGTGACCGGTGGAATGGCTATGA
TACATCAAGCTATGCCCGTGTTGTGGAGAGATATGAAGCTCGGGATGATG
CTCGAAGGAAATTCAATAAGGAGCAGCAGCTTAAGAAATTGGAGGAGAAG
AATAATAATAATGATAGTGGTGGGGGTGGGGACAGTGATGGAGAGGATGA
G
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