CX043429

Overview
NameCX043429
Unique NameCX043429
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6148 contig Csv1_Contig6148:545..1269. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043429 vs. ExPASy Swiss-Prot
Match: CLH1_CITUN (Chlorophyllase-1, chloroplastic OS=Citrus unshiu PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.271e-49
Identity = 92/157 (58.60%), Postives = 112/157 (71.34%), Query Frame = -2
Query:  251 ALVGIDPVAGLASVHSELEPPILSHDSFEFSIPXXXXXXXXXXXTKCMQPCAPENKNHEQFFKRCTYSDHAHFDAKDYGHMDILDDNPQGPKNWAISKFLCTNGKKPRDPMRRCVAGIAAAFLKAYFDGDCEDFRTMLKDPSLAPIELDEVEFIPAA 721
            A++G+DPVAG +   + L+P ILS DSF+FSIP            +C+  CAPE  NHE+FF RC  S  AHF A DYGHMDILDDNP   K+WA+SK+ C NG + RDPMRRCV+GI  AFLK +FDGD EDFR +LKDPS API+LD VE+I A+
Sbjct:  164 AVIGLDPVAGTSKT-TGLDPSILSFDSFDFSIPVTVIGTGLGGVARCITACAPEGANHEEFFNRCKNSSRAHFVATDYGHMDILDDNPSDVKSWALSKYFCKNGNESRDPMRRCVSGIVVAFLKDFFDGDAEDFRQILKDPSFAPIKLDSVEYIDAS 319          
BLAST of CX043429 vs. ExPASy Swiss-Prot
Match: CLH1_CITSI (Chlorophyllase-1, chloroplastic OS=Citrus sinensis GN=CHLASE1 PE=1 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.405e-48
Identity = 91/157 (57.96%), Postives = 111/157 (70.70%), Query Frame = -2
Query:  251 ALVGIDPVAGLASVHSELEPPILSHDSFEFSIPXXXXXXXXXXXTKCMQPCAPENKNHEQFFKRCTYSDHAHFDAKDYGHMDILDDNPQGPKNWAISKFLCTNGKKPRDPMRRCVAGIAAAFLKAYFDGDCEDFRTMLKDPSLAPIELDEVEFIPAA 721
            A++G+DPVAG +   + L+P ILS DSF+FSIP            +C+  CAPE  NHE+FF RC  S  AHF A DYGHMDILDDNP   K+WA+SK+ C NG + RDPMRRCV+GI  AFLK +F GD EDFR +LKDPS API+LD VE+I A+
Sbjct:  164 AVIGLDPVAGTSKT-TGLDPSILSFDSFDFSIPVTVIGTGLGGVARCITACAPEGANHEEFFNRCKNSSRAHFVATDYGHMDILDDNPSDVKSWALSKYFCKNGNESRDPMRRCVSGIVVAFLKDFFYGDAEDFRQILKDPSFAPIKLDSVEYIDAS 319          
BLAST of CX043429 vs. ExPASy Swiss-Prot
Match: CLH1_ARATH (Chlorophyllase-1 OS=Arabidopsis thaliana GN=CLH1 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.043e-23
Identity = 64/153 (41.83%), Postives = 91/153 (59.48%), Query Frame = -2
Query:  275 SALVGIDPVAGLASVHSELEPPILSH--DSFEFSIPXXXXXXXXXXXTK-CMQPCAPENKNHEQFFKRCTYSDHAHFDAKDYGHMDILDDNPQGPKNWAISKFLCTNGKKPRDPMRRCVAGIAAAFLKAYFDGDCEDFRTMLKDPSLAPIELD 724
            SAL+GIDPVAG  + +   +P IL++  +SFE  IP               M PCAP + NHE+F+K C  +  AHF A DYGHMD+LDD+  G   + ++  +C NG++ +  MR  V GI  AFLK    G+  + R ++KDPS++P +LD
Sbjct:  162 SALIGIDPVAG-TNKYIRTDPHILTYKPESFELDIPVAVVGTGLGPKWNNVMPPCAPTDLNHEEFYKECK-ATKAHFVAADYGHMDMLDDDLPGFVGF-MAGCMCKNGQRKKSEMRSFVGGIVVAFLKYSLWGEKAEIRLIVKDPSVSPAKLD 311          
BLAST of CX043429 vs. ExPASy Swiss-Prot
Match: CLH2_ARATH (Chlorophyllase-2, chloroplastic OS=Arabidopsis thaliana GN=CLH2 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.515e-18
Identity = 62/162 (38.27%), Postives = 86/162 (53.09%), Query Frame = -2
Query:  260 SALVGIDPVAGLASVHSELEPPILSH--DSFEFS---IPXXXXXXXXXXXTKCMQPCAPENKNHEQFFKRCTYSDHAHFDAKDYGHMDILDDNPQGPKNWAISKFLCTNGKKPRDPMRRCVAGIAAAFLKAYFDGDCEDFRTMLKD--PSLAPIELDEVEFI 724
            S L+GIDPV G      +  PP+L++  +SF+     I                 PCAP   NH +FF+ C      HF AKDYGH+D+LDD+ +G +  + S  LC NG++ R PMRR V G+  +FLKAY +GD  +    +KD      P+E+ E E I
Sbjct:  161 STLIGIDPVDGTGK-GKQTPPPVLAYLPNSFDLDKTPILVIGSGLGETARNPLFPPCAPPGVNHREFFRECQ-GPAWHFVAKDYGHLDMLDDDTKGIRGKS-SYCLCKNGEE-RRPMRRFVGGLVVSFLKAYLEGDDREL-VKIKDGCHEDVPVEIQEFEVI 317          
BLAST of CX043429 vs. ExPASy Swiss-Prot
Match: CLH0_CHEAL (Chlorophyllase type 0 OS=Chenopodium album GN=CACLH PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.037e-16
Identity = 55/151 (36.42%), Postives = 79/151 (52.32%), Query Frame = -2
Query:  278 SALVGIDPVAGLASVHSELEPPILSH--DSFEFSIPXXXXXXXXXXXTKCMQPCAPENKNHEQFFKRCTYSDHAHFDAKDYGHMDILDDNPQGPKNWAISKFLCTNGKKPRDPMRRCVAGIAAAFLKAYFDGDCEDFRTMLKDPSLAPIEL 724
            SAL+G+DPVAG  SV     P +L++  +SF  SIP           T     CAP + +H+QF+  C   + +HF    YGHMD+L++    P    +S  +C    +P+  MRR + GI  AFL AYF  D   +  ++ + SLAP  L
Sbjct:  185 SALIGVDPVAG-RSVDDRTLPHVLTYKPNSFNLSIPVTVIGSGLGNHTIS---CAPNHVSHQQFYDECK-ENSSHFVITKYGHMDMLNEFRLSPIAVTMS-LMCAQSFRPKATMRRTLGGIMVAFLNAYFRDDGRQYYAIIANRSLAPTNL 329          
The following BLAST results are available for this feature:
BLAST of CX043429 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CLH1_CITUN1.271e-4958.60Chlorophyllase-1, chloroplastic OS=Citrus unshiu P... [more]
CLH1_CITSI1.405e-4857.96Chlorophyllase-1, chloroplastic OS=Citrus sinensis... [more]
CLH1_ARATH2.043e-2341.83Chlorophyllase-1 OS=Arabidopsis thaliana GN=CLH1 P... [more]
CLH2_ARATH1.515e-1838.27Chlorophyllase-2, chloroplastic OS=Arabidopsis tha... [more]
CLH0_CHEAL7.037e-1636.42Chlorophyllase type 0 OS=Chenopodium album GN=CACL... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_11A07_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-11A07-A13-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043429 ID=CX043429; Name=CX043429; organism=Citrus sinensis; type=EST; length=725bp
TTTTTTTTTTTTTTGACGTGAATACTAGTTTATTTTGAATGTAGAAGAAA
CTGCTGACAAAGAAACCAAATACAGTAATAAACAACATGATCATTACTTA
AAAGGTCATCCTAAGCAAGGCTCATTATGTCCCGTTATTATATATTATTT
AGTTTTTCTAAGCTTTCCCTCATTTCTGAGAAGTTTACCTCCCAAAATGG
AAAGTGCATATGAGTCAAATGGGTAGGTGCAGTGGTTAAGCTTTTGCACG
AGCTGCGGGAATGAACTCAACCTCATCAAGCTCTATCGGAGCAAGAGAAG
GGTCTTTCAACATTGTCCTGAAATCCTCACAATCACCATCAAAATAGGCC
TTCAAAAAAGCCGCAGCAATGCCAGCAACACATCTCCTCATGGGATCCCT
TGGTTTCTTTCCATTCGTGCACAAAAATTTTGAAATTGCCCAATTCTTTG
GTCCCTGGGGATTATCATCTAAAATGTCCATGTGACCATAATCCTTAGCA
TCAAAATGAGCATGATCTGAATATGTACACCTCTTGAAAAATTGCTCATG
GTTTTTGTTTTCCGGTGCACAAGGCTGCATGCACTTTGTCACACCACCGA
GTCCGGTGCCAATTACAGTAACAGGAATTGAGAACTCGAATGAGTCATGA
CTGAGAATCGGGGGTTCAAGTTCACTATGAACGCTGGCTAACCCCGCAAC
TGGGTCTATGCCTACTAATGCTGAA
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