CV884716

Overview
NameCV884716
Unique NameCV884716
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length870
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3363 contig Csv1_Contig3363:1..870. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884716 vs. ExPASy Swiss-Prot
Match: MSI4_ARATH (WD-40 repeat-containing protein MSI4 OS=Arabidopsis thaliana GN=MSI4 PE=1 SV=3)

HSP 1 Score: 360.918 bits (925), Expect = 5.261e-99
Identity = 172/220 (78.18%), Postives = 186/220 (84.55%), Query Frame = -2
Query:  210 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWXXXXXXXXXXXXXXXXTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 869
            HEDTVEDV F P+SAQEFCSVGDDSCLILWDAR GT+PV KVEKAHDADLHCVDWNP DDNLILTGSADN+VR+FDRR LT+NGVGSPI KFEGH AAVLCVQWSPDKSSVFGSSAEDGLLNIWDY++V KK +   R    PAGLFFQHAGHRDKVVDFHWNASDPW                TLQIWRMSDLIYRP++EV+AELEKFK+HV++C SKP
Sbjct:  291 HEDTVEDVAFSPTSAQEFCSVGDDSCLILWDARTGTNPVTKVEKAHDADLHCVDWNPHDDNLILTGSADNTVRLFDRRKLTANGVGSPIYKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYDRVSKKSD---RAAKSPAGLFFQHAGHRDKVVDFHWNASDPWTIVSVSDDCETTGGGGTLQIWRMSDLIYRPEEEVVAELEKFKSHVMTCASKP 507          
BLAST of CV884716 vs. ExPASy Swiss-Prot
Match: MSI5_ARATH (WD-40 repeat-containing protein MSI5 OS=Arabidopsis thaliana GN=MSI5 PE=2 SV=2)

HSP 1 Score: 355.525 bits (911), Expect = 2.211e-97
Identity = 170/219 (77.63%), Postives = 184/219 (84.02%), Query Frame = -2
Query:  213 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWXXXXXXXXXXXXXXXXTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK 869
            H+DTVEDV FCPSSAQEFCSVGDDSCL+LWDAR GTSP +KVEKAHDADLHCVDWNP D+NLILTGSADN+VR+FDRRNLTSNGVGSP+ KFEGH AAVLCVQWSPDKSSVFGSSAEDGLLNIWD ++VGKK E   R T  P GLFFQHAGHRDKVVDFHW+  +PW                TLQIWRMSDLIYRP+DEVL ELEKFK+HV +CTSK
Sbjct:  271 HKDTVEDVAFCPSSAQEFCSVGDDSCLMLWDARTGTSPAMKVEKAHDADLHCVDWNPHDNNLILTGSADNTVRVFDRRNLTSNGVGSPVYKFEGHRAAVLCVQWSPDKSSVFGSSAEDGLLNIWDCDRVGKKSE---RATKTPDGLFFQHAGHRDKVVDFHWSLLNPWTIVSVSDNCESIGGGGTLQIWRMSDLIYRPEDEVLTELEKFKSHVFTCTSK 486          
BLAST of CV884716 vs. ExPASy Swiss-Prot
Match: RBBD_DICDI (Probable histone-binding protein rbbD OS=Dictyostelium discoideum GN=rbbD PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 5.191e-30
Identity = 72/213 (33.80%), Postives = 112/213 (52.58%), Query Frame = -2
Query:  231 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWXXXXXXXXXXXXXXXXTLQIWRMSDLIYRPQDEVLAELEKFKAHV 869
            H   VEDV +       F SVGDD  L++WD R GT P+  VE AH+++++C+ +NP  + L+ TGS D +V ++D RNL     G+ ++    H+  V  VQ+SP   +V  S   D  +N+WD  ++G++ +      + P  L F H GH  K+ DF WN +DPW                 LQIW+M++ IY  +++ L   +   A +
Sbjct:  223 HTSIVEDVAWHYIHDTFFGSVGDDKKLMIWDTRTGTKPIHVVE-AHNSEVNCLSFNPFCEFLVATGSTDKTVALWDMRNL-----GNRLHSLISHTDEVFQVQFSPHNETVLASCGSDRRVNVWDLSRIGEE-QNNEDAADGPPELLFIHGGHTSKISDFSWNPNDPW-------SIASVAEDNILQIWQMAENIYNDREDDLENSKVTNAQI 421          
BLAST of CV884716 vs. ExPASy Swiss-Prot
Match: LIN53_CAEEL (Probable histone-binding protein lin-53 OS=Caenorhabditis elegans GN=lin-53 PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.510e-29
Identity = 72/201 (35.82%), Postives = 105/201 (52.24%), Query Frame = -2
Query:  267 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWXXXXXXXXXXXXXXXXTLQIWRMSDLIYRPQDE 869
            HE  VEDV +       F SVGDD  L++WD R  T P   ++ AH A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   +  VQWSP   ++  SS  D  L++WD  K+G+  +      + P  L F H GH  K+ DF WN ++PW                 LQ+W+M+D IY   DE
Sbjct:  221 HESVVEDVAWHVLHDGVFGSVGDDKKLLIWDVRTST-PGHCID-AHSAEVNCLAFNPYSEFILATGSADKTVALWDLRNLRMK-----LHSFESHRDEIFQVQWSPHNETILASSGTDKRLHVWDLSKIGED-QSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW-------VVCSVSEDNILQVWQMADNIYNEVDE 406          
BLAST of CV884716 vs. ExPASy Swiss-Prot
Match: RBBP4_DANRE (Histone-binding protein RBBP4 OS=Danio rerio GN=rbbp4 PE=2 SV=3)

HSP 1 Score: 127.872 bits (320), Expect = 7.496e-29
Identity = 71/202 (35.15%), Postives = 104/202 (51.49%), Query Frame = -2
Query:  270 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR-TTNYPAGLFFQHAGHRDKVVDFHWNASDPWXXXXXXXXXXXXXXXXTLQIWRMSDLIYRPQD 869
            H   VEDV++       F SV DD  L++WD R   TS       AH A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   +  VQWSP   ++  SS  D  LN+WD  K+G+  EQ P    + P  L F H GH  K+ DF WN ++PW                 +Q+W+M++ IY  +D
Sbjct:  226 HTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHAVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGE--EQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW-------VICSVSEDNIMQVWQMAENIYNDED 413          
BLAST of CV884716 vs. ExPASy Swiss-Prot
Match: RBP4B_XENLA (Histone-binding protein RBBP4-B OS=Xenopus laevis GN=rbbp4-B PE=1 SV=3)

HSP 1 Score: 127.102 bits (318), Expect = 1.279e-28
Identity = 71/202 (35.15%), Postives = 104/202 (51.49%), Query Frame = -2
Query:  270 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR-TTNYPAGLFFQHAGHRDKVVDFHWNASDPWXXXXXXXXXXXXXXXXTLQIWRMSDLIYRPQD 869
            H   VEDV++       F SV DD  L++WD R   TS       AH A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   +  VQWSP   ++  SS  D  LN+WD  K+G+  EQ P    + P  L F H GH  K+ DF WN ++PW                 +Q+W+M++ IY  +D
Sbjct:  226 HTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGE--EQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW-------VICSVSEDNIMQVWQMAENIYNDED 413          
BLAST of CV884716 vs. ExPASy Swiss-Prot
Match: RBP4A_XENLA (Histone-binding protein RBBP4-A OS=Xenopus laevis GN=rbbp4-A PE=1 SV=3)

HSP 1 Score: 127.102 bits (318), Expect = 1.279e-28
Identity = 71/202 (35.15%), Postives = 104/202 (51.49%), Query Frame = -2
Query:  270 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR-TTNYPAGLFFQHAGHRDKVVDFHWNASDPWXXXXXXXXXXXXXXXXTLQIWRMSDLIYRPQD 869
            H   VEDV++       F SV DD  L++WD R   TS       AH A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   +  VQWSP   ++  SS  D  LN+WD  K+G+  EQ P    + P  L F H GH  K+ DF WN ++PW                 +Q+W+M++ IY  +D
Sbjct:  226 HTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGE--EQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW-------VICSVSEDNIMQVWQMAENIYNDED 413          
BLAST of CV884716 vs. ExPASy Swiss-Prot
Match: RBBP4_XENTR (Histone-binding protein RBBP4 OS=Xenopus tropicalis GN=rbbp4 PE=2 SV=3)

HSP 1 Score: 127.102 bits (318), Expect = 1.279e-28
Identity = 71/202 (35.15%), Postives = 104/202 (51.49%), Query Frame = -2
Query:  270 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR-TTNYPAGLFFQHAGHRDKVVDFHWNASDPWXXXXXXXXXXXXXXXXTLQIWRMSDLIYRPQD 869
            H   VEDV++       F SV DD  L++WD R   TS       AH A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   +  VQWSP   ++  SS  D  LN+WD  K+G+  EQ P    + P  L F H GH  K+ DF WN ++PW                 +Q+W+M++ IY  +D
Sbjct:  226 HTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGE--EQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW-------VICSVSEDNIMQVWQMAENIYNDED 413          
BLAST of CV884716 vs. ExPASy Swiss-Prot
Match: RBBP4_PONAB (Histone-binding protein RBBP4 OS=Pongo abelii GN=RBBP4 PE=2 SV=3)

HSP 1 Score: 127.102 bits (318), Expect = 1.279e-28
Identity = 71/202 (35.15%), Postives = 104/202 (51.49%), Query Frame = -2
Query:  270 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR-TTNYPAGLFFQHAGHRDKVVDFHWNASDPWXXXXXXXXXXXXXXXXTLQIWRMSDLIYRPQD 869
            H   VEDV++       F SV DD  L++WD R   TS       AH A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   +  VQWSP   ++  SS  D  LN+WD  K+G+  EQ P    + P  L F H GH  K+ DF WN ++PW                 +Q+W+M++ IY  +D
Sbjct:  226 HTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGE--EQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW-------VICSVSEDNIMQVWQMAENIYNDED 413          
BLAST of CV884716 vs. ExPASy Swiss-Prot
Match: RBBP4_MOUSE (Histone-binding protein RBBP4 OS=Mus musculus GN=Rbbp4 PE=1 SV=4)

HSP 1 Score: 127.102 bits (318), Expect = 1.279e-28
Identity = 71/202 (35.15%), Postives = 104/202 (51.49%), Query Frame = -2
Query:  270 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR-TTNYPAGLFFQHAGHRDKVVDFHWNASDPWXXXXXXXXXXXXXXXXTLQIWRMSDLIYRPQD 869
            H   VEDV++       F SV DD  L++WD R   TS       AH A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   +  VQWSP   ++  SS  D  LN+WD  K+G+  EQ P    + P  L F H GH  K+ DF WN ++PW                 +Q+W+M++ IY  +D
Sbjct:  226 HTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGE--EQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW-------VICSVSEDNIMQVWQMAENIYNDED 413          
The following BLAST results are available for this feature:
BLAST of CV884716 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
MSI4_ARATH5.261e-9978.18WD-40 repeat-containing protein MSI4 OS=Arabidopsi... [more]
MSI5_ARATH2.211e-9777.63WD-40 repeat-containing protein MSI5 OS=Arabidopsi... [more]
RBBD_DICDI5.191e-3033.80Probable histone-binding protein rbbD OS=Dictyoste... [more]
LIN53_CAEEL1.510e-2935.82Probable histone-binding protein lin-53 OS=Caenorh... [more]
RBBP4_DANRE7.496e-2935.15Histone-binding protein RBBP4 OS=Danio rerio GN=rb... [more]
RBP4B_XENLA1.279e-2835.15Histone-binding protein RBBP4-B OS=Xenopus laevis ... [more]
RBP4A_XENLA1.279e-2835.15Histone-binding protein RBBP4-A OS=Xenopus laevis ... [more]
RBBP4_XENTR1.279e-2835.15Histone-binding protein RBBP4 OS=Xenopus tropicali... [more]
RBBP4_PONAB1.279e-2835.15Histone-binding protein RBBP4 OS=Pongo abelii GN=R... [more]
RBBP4_MOUSE1.279e-2835.15Histone-binding protein RBBP4 OS=Mus musculus GN=R... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010B06_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T7_B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884716 ID=CV884716; Name=CV884716; organism=Citrus sinensis; type=EST; length=870bp
TTTTTTTTTGTATAAAAGATGGTCAGAAACCTTCATCATACAACCTCATT
TCTTGAAACGTATAGTCTACTAAAATACAACTAAATAAAGGATACCAATC
AATTTCCAAGTGTCTAGTGTACCCAATAGCTCAATAAAGATGATAAACTA
CAAGAAGTTCTAGACATCTAAACAAGTGCTCTACGATTTCTTATCACTCG
GTTGACTCAAGGCTTTGAAGTACATGAAATTACGTGGGCCTTGAACTTCT
CAAGCTCTGCTAAAACCTCATCTTGCGGCCGATAGATCAAATCACTCATG
CGCCATATCTGCAGTGTTCCTCCTCCACCAGTAGAATCGCAGTCATCAGA
GACACTAACAACAGTCCATGGATCCGATGCATTCCAGTGGAAGTCAACAA
CTTTGTCCCTGTGCCCAGCATGCTGGAAAAACAAGCCTGCAGGATAATTA
GTGGTTCTTGGCCCCTGCTCCACCTTTTTACCAACCTTCTCATAGTCCCA
AATGTTTAAGAGACCATCCTCTGCAGAGCTTCCAAATACAGACGACTTGT
CTGGAGACCACTGAACACAGAGAACAGCGGCACTGTGACCTTCAAATTTA
TTGATAGGCGATCCAACTCCGTTAGAAGTGAGATTACGCCGATCAAACAT
GCGGACAGAGTTATCAGCTGACCCGGTAAGGATAAGATTATCATCAAGGG
GATTCCAGTCAACACAGTGAAGATCAGCATCATGTGCTTTTTCAACCTTA
ATGACTGGGCTTGTGCCAACTCGAGCATCCCATAATATAAGGCATGAGTC
ATCACCAACGCTACAGAACTCCTGCGCACTGGATGGACAGAATGTCACAT
CTTCAACTGTATCCTCATGC
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