CV884713

Overview
NameCV884713
Unique NameCV884713
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3362 contig Csv1_Contig3362:1..753. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884713 vs. ExPASy Swiss-Prot
Match: SYFB_ARATH (Probable phenylalanyl-tRNA synthetase beta chain OS=Arabidopsis thaliana GN=At1g72550 PE=2 SV=1)

HSP 1 Score: 424.476 bits (1090), Expect = 3.095e-118
Identity = 205/248 (82.66%), Postives = 233/248 (93.95%), Query Frame = 1
Query:   10 MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEGIAQALRVFNKQQEIPKYTLSDVSKDSMLQMHVKPETSSIRPYVVCAVLRDISFDEASYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPIINGAHSAITL 753
            MPT+SVGRDRLFAALG+SYT+E+FE+LCF FGIELDDVTTEKAIIRKEKH+DEE D+ DEE+IYKIE+PANR DLLCLEG+AQ+LRVF ++QEIP YTL+D+SKD +LQM+VKPETS IRP+VVCAVLR ++FDEA YNSFIDLQDKLHQNICRRR+LVAIGTHDLDTLQGPFTYEALPP+ INFVPLKQT+ F ADEL+EFYKSD+KLKK+LHIIENSP++PVLYD  RTVLSLPPIINGAHSAITL
Sbjct:    1 MPTISVGRDRLFAALGESYTQEKFEELCFSFGIELDDVTTEKAIIRKEKHIDEEADD-DEEIIYKIEIPANRPDLLCLEGLAQSLRVFIEKQEIPTYTLADISKDKILQMNVKPETSKIRPFVVCAVLRGVTFDEARYNSFIDLQDKLHQNICRRRSLVAIGTHDLDTLQGPFTYEALPPTDINFVPLKQTKSFRADELIEFYKSDMKLKKFLHIIENSPVFPVLYDSKRTVLSLPPIINGAHSAITL 247          
BLAST of CV884713 vs. ExPASy Swiss-Prot
Match: SYFB_DROME (Probable phenylalanyl-tRNA synthetase beta chain OS=Drosophila melanogaster GN=CG5706 PE=2 SV=1)

HSP 1 Score: 313.538 bits (802), Expect = 7.693e-85
Identity = 152/248 (61.29%), Postives = 190/248 (76.61%), Query Frame = 1
Query:   10 MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEGIAQALRVFNKQQEIPKYTLSDVSKDSMLQMHVKPETSSIRPYVVCAVLRDISFDEASYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPIINGAHSAITL 753
            MPT+ V RD LF ALGK+YT +EF+DLCF FG+ELD+VTTEK ++ KE+          EE+IY+I++PANRYDLLCLEG+   L VF  + + PK+   +++K  +L+  + P T+ IRPY V AVLR+++F +ASYNSFIDLQDKLHQNICR+RTLVAIGTHDLDTLQGPF+YEAL P  I F PL QT++ T  ELM+FY +  +LK+YL II  SP+YPV+YD NR VLSLPPIING HS ITL
Sbjct:    1 MPTIGVKRDLLFEALGKTYTDDEFQDLCFAFGLELDEVTTEKQMLTKEQGDVAAAANASEEIIYRIDIPANRYDLLCLEGLVTGLLVFQGKLKPPKFQFVELAKRQVLK--IDPSTAQIRPYAVAAVLRNVTFTQASYNSFIDLQDKLHQNICRKRTLVAIGTHDLDTLQGPFSYEALAPDQIKFKPLNQTKEMTGSELMDFYSTHAQLKQYLPIIRESPVYPVIYDANRVVLSLPPIINGDHSKITL 246          
BLAST of CV884713 vs. ExPASy Swiss-Prot
Match: SYFB_PONAB (Phenylalanyl-tRNA synthetase beta chain OS=Pongo abelii GN=FARSB PE=2 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 4.089e-78
Identity = 149/249 (59.84%), Postives = 187/249 (75.10%), Query Frame = 1
Query:   10 MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEGIAQALRVFNKQQEIPKYTLSDVSKDSMLQ-MHVKPETSSIRPYVVCAVLRDISFDEASYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPIINGAHSAITL 753
            MPTVSV RD LF ALG++YT EEF++LCF FG+ELD++T+EK II KE+   +    +D  V+YKI+VPANRYDLLCLEG+ + L+VF ++ + P Y    V  D  +Q + +  ET+ IRP+ V AVLR+I F +  Y+SFI+LQ+KLHQNICR+R LVAIGTHDLDTL GPFTY A  PS I F PL +T+++TA ELM  YK+D  LK YLHIIEN PLYPV+YD N  VLS+PPIING HS IT+
Sbjct:    1 MPTVSVKRDLLFQALGRTYTDEEFDELCFEFGLELDEITSEKEIISKEQGNVKAAGASDV-VLYKIDVPANRYDLLCLEGLVRGLQVFKERIKAPVY--KRVMPDGKIQKLIITEETAKIRPFAVAAVLRNIKFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKRPSDIKFKPLNKTKEYTACELMNIYKTDNHLKHYLHIIENKPLYPVIYDSNGVVLSMPPIINGDHSRITV 246          
BLAST of CV884713 vs. ExPASy Swiss-Prot
Match: SYFB_HUMAN (Phenylalanyl-tRNA synthetase beta chain OS=Homo sapiens GN=FARSB PE=1 SV=2)

HSP 1 Score: 291.197 bits (744), Expect = 4.089e-78
Identity = 149/249 (59.84%), Postives = 187/249 (75.10%), Query Frame = 1
Query:   10 MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEGIAQALRVFNKQQEIPKYTLSDVSKDSMLQ-MHVKPETSSIRPYVVCAVLRDISFDEASYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPIINGAHSAITL 753
            MPTVSV RD LF ALG++YT EEF++LCF FG+ELD++T+EK II KE+   +    +D  V+YKI+VPANRYDLLCLEG+ + L+VF ++ + P Y    V  D  +Q + +  ET+ IRP+ V AVLR+I F +  Y+SFI+LQ+KLHQNICR+R LVAIGTHDLDTL GPFTY A  PS I F PL +T+++TA ELM  YK+D  LK YLHIIEN PLYPV+YD N  VLS+PPIING HS IT+
Sbjct:    1 MPTVSVKRDLLFQALGRTYTDEEFDELCFEFGLELDEITSEKEIISKEQGNVKAAGASDV-VLYKIDVPANRYDLLCLEGLVRGLQVFKERIKAPVY--KRVMPDGKIQKLIITEETAKIRPFAVAAVLRNIKFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKRPSDIKFKPLNKTKEYTACELMNIYKTDNHLKHYLHIIENKPLYPVIYDSNGVVLSMPPIINGDHSRITV 246          
BLAST of CV884713 vs. ExPASy Swiss-Prot
Match: SYFB_MOUSE (Phenylalanyl-tRNA synthetase beta chain OS=Mus musculus GN=Farsb PE=2 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 6.974e-78
Identity = 146/248 (58.87%), Postives = 188/248 (75.81%), Query Frame = 1
Query:   10 MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEGIAQALRVFNKQQEIPKYTLSDVSKDSMLQMHVKPETSSIRPYVVCAVLRDISFDEASYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPIINGAHSAITL 753
            MPTVSV RD LF ALG++YT EEF++LCF FG+ELD++T+EK II KE+   +    +D  V+YKI+VPANRYDLLCLEG+A+ L+VF ++ + P Y    + K  + ++ +  ET+ +RP+ V AVLR+I F +  Y+SFI+LQ+KLHQNICR+R LVAIGTHDLDTL GPFTY A  PS I F PL +T+++TA ELM  YK+D  LK YLHIIE+ PLYPV+YD N  VLS+PPIING HS IT+
Sbjct:    1 MPTVSVKRDLLFQALGRTYTDEEFDELCFEFGLELDEITSEKQIISKEQGHGKAQGASDV-VLYKIDVPANRYDLLCLEGLARGLQVFKERIKAPVYKRV-MPKGDIQKLVITEETAKVRPFAVAAVLRNIKFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKRPSDIKFKPLNKTKEYTACELMNIYKTDNHLKHYLHIIESKPLYPVIYDSNGVVLSMPPIINGNHSKITV 246          
BLAST of CV884713 vs. ExPASy Swiss-Prot
Match: SYFB_CAEEL (Phenylalanyl-tRNA synthetase beta chain OS=Caenorhabditis elegans GN=frs-2 PE=2 SV=2)

HSP 1 Score: 290.041 bits (741), Expect = 9.109e-78
Identity = 142/248 (57.26%), Postives = 186/248 (75.00%), Query Frame = 1
Query:   10 MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEGIAQALRVFNKQQEIPKYTLSDVSKDSMLQMHVKPETSSIRPYVVCAVLRDISFDEASYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPIINGAHSAITL 753
            MPTV + +  L     + Y+++EF++LCF +G+ELD++T+EKA + KE+      D ND+EV YKI++PANRYDLL +EG+A+A+R+F ++   P Y  +DV K  + ++ VK ET+ +RP+VV AVLRDISFD  SY SFIDLQDKLHQNICR+RTLVAIGTHDLDT+QGPF Y A  P  I F PL QT+++TA+ELM  Y +D  LK YL II+N P+YPV+YD+N  V S+PPIING HS ITL
Sbjct:    1 MPTVGIKKVILDKHFKRVYSEKEFDELCFEYGLELDEITSEKAAVEKEQGTRAASDLNDQEV-YKIDIPANRYDLLSVEGLARAIRIFKQEIPSPAYKYADVPKTGLQKIIVKKETAQVRPFVVGAVLRDISFDADSYASFIDLQDKLHQNICRKRTLVAIGTHDLDTIQGPFEYRAEAPKDIKFKPLNQTKEYTAEELMTLYSTDSHLKAYLPIIQNHPVYPVIYDKNGVVCSMPPIINGEHSKITL 247          
BLAST of CV884713 vs. ExPASy Swiss-Prot
Match: SYFB_DICDI (Phenylalanyl-tRNA synthetase beta chain OS=Dictyostelium discoideum GN=pheSB PE=3 SV=2)

HSP 1 Score: 279.256 bits (713), Expect = 1.608e-74
Identity = 140/252 (55.56%), Postives = 189/252 (75.00%), Query Frame = 1
Query:   10 MPTVSVGRDRLFAALG---KSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEGIAQALRVFNKQQEIPKYTLSDVSKDSMLQMHVKPETSSIRPYVVCAVLRDISFDEASYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFY-KSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPIINGAHSAITL 753
            MP V++ RD L+ ALG   K+YT+E+FEDLCF FG+ELD+VT+E+ + + E  +++    +D  VIYKI+V ANRYDLLCLEGIA+AL V+N +  IPKY +    K+S  ++++  E  S+RP +V  +LRDI+F + SY+SFIDLQ+KLH NIC++R+LV+IGTHDLDTL GPF Y+AL P  I FVPL QT+++ A+EL +FY +S   LKK+L II++SP+YPV+YD    V SLPPIING HS I L
Sbjct:    1 MPKVNINRDILYKALGFYIKTYTQEQFEDLCFAFGVELDEVTSEREMKKNETGVEDLTVSDD--VIYKIDVSANRYDLLCLEGIARALNVYNHKASIPKYQIVP-PKNSHEKLYISKEVESVRPVIVAGILRDITFTQESYDSFIDLQEKLHANICKKRSLVSIGTHDLDTLSGPFYYKALAPKDIKFVPLSQTKEYNAEELFKFYDESSSHLKKFLPIIKDSPVYPVIYDSKNVVCSLPPIINGEHSKIKL 249          
BLAST of CV884713 vs. ExPASy Swiss-Prot
Match: SYFB_CANAL (Phenylalanyl-tRNA synthetase beta chain OS=Candida albicans GN=FRS1 PE=2 SV=3)

HSP 1 Score: 266.159 bits (679), Expect = 1.409e-70
Identity = 139/248 (56.05%), Postives = 170/248 (68.55%), Query Frame = 1
Query:   10 MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEGIAQALRVFNKQQEIPKYTLSDVSKDSMLQMHVKPETSSIRPYVVCAVLRDISFDEASYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPIINGAHSAITL 753
            MPT+ V ++ LF  LG+SYT EEF++LCF FGIELD+ TTE          D +G   DE    KIEVPANRYD+LC+EGIAQAL  F      P Y LS    +  + + +K  T  IR Y   A+LR+++ DE +Y+SFI LQDKLH N+CR RTLVAIGTHDLDTL  PFTYEAL P  I F PL QT++   +ELMEFY+ D  + K+LHII++SP+YPV+ D NRTV SLPPIIN  HS ITL
Sbjct:    1 MPTIPVDKEDLFKLLGRSYTTEEFDELCFQFGIELDEDTTE----------DVKG--TDERPQLKIEVPANRYDMLCIEGIAQALNEFLGNTSAPNYKLSPSKPE--ISLTIKESTYPIRQYAASAILRNVNLDERAYDSFIALQDKLHANLCRNRTLVAIGTHDLDTLTPPFTYEALAPKDIVFKPLNQTKEINGEELMEFYEKDKNIGKFLHIIKDSPVYPVMLDANRTVASLPPIINSDHSKITL 234          
BLAST of CV884713 vs. ExPASy Swiss-Prot
Match: SYFB_SCHPO (Phenylalanyl-tRNA synthetase beta chain OS=Schizosaccharomyces pombe GN=SPAC23A1.12c PE=2 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 1.009e-68
Identity = 131/248 (52.82%), Postives = 163/248 (65.73%), Query Frame = 1
Query:   10 MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEGIAQALRVFNKQQEIPKYTLSDVSKDSMLQMHVKPETSSIRPYVVCAVLRDISFDEASYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPIINGAHSAITL 753
            MPT+S  ++ L+ ALG+ YT +EF++LCF FGIELD+ TT           D E   ++   + KI++PANRYD+LCLEGIAQAL VFN++   P+Y L      S   + + PETS IRPY   A+LR +  D   Y SFI LQDKLH N+CR RTLVAIGTHD   ++GPFTYEAL P  INFVPL QT++     L+EFYK    L +YLHII NSP YPV+ D  R V SLPPIIN   S I++
Sbjct:    1 MPTISCDKEELYKALGREYTTQEFDELCFQFGIELDEDTTN----------DPERSPSERPSL-KIDIPANRYDMLCLEGIAQALNVFNRRMATPQYKLLP----STTSLTISPETSEIRPYAAAAILRGVKLDPIRYQSFIALQDKLHANLCRNRTLVAIGTHDFSVMEGPFTYEALKPEEINFVPLNQTQEINGSNLLEFYKDSKHLSRYLHIIANSPRYPVILDAKRRVCSLPPIINSEFSKISV 233          
BLAST of CV884713 vs. ExPASy Swiss-Prot
Match: SYFB_YEAST (Phenylalanyl-tRNA synthetase beta chain OS=Saccharomyces cerevisiae GN=FRS1 PE=1 SV=3)

HSP 1 Score: 248.054 bits (632), Expect = 3.969e-65
Identity = 125/251 (49.80%), Postives = 175/251 (69.72%), Query Frame = 1
Query:   10 MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEGIAQALRVFNKQQEIPKYTLSDVSKDSMLQMHVKPETSSIRPYVVCAVLRDISFDEASYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLK---LKKYLHIIENSPLYPVLYDQNRTVLSLPPIINGAHSAITL 753
            MPTVSV + +LF  LGK+YT +EF++LCF FG+E+D+ TTE+A+            +  EE   K+++ ANRYDLLC+EGI+Q+L  + +++E P Y LS  +     ++ +   T  IRP+   AVLR+I  +E SY SFI LQDKLH N+CR R+LVA+GTHDLD+++GPF Y ALPP  I FVPL QT++FT D+L+EFYKS  +   + +Y+HIIE+SP++PV+ D    V SLPP+IN  HS I++
Sbjct:    1 MPTVSVNKQQLFDLLGKNYTSQEFDELCFEFGMEMDEDTTEEAL------------KTGEEPELKLDISANRYDLLCIEGISQSLNEYLERKERPDYKLSKPTT----KLIIDKSTEQIRPFATAAVLRNIKLNEKSYASFIALQDKLHANLCRNRSLVAMGTHDLDSIEGPFHYRALPPKDIKFVPLNQTQEFTGDKLIEFYKSPEQKNNIGRYVHIIEDSPVFPVIMDSKDRVCSLPPLINSEHSKISV 235          
The following BLAST results are available for this feature:
BLAST of CV884713 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
SYFB_ARATH3.095e-11882.66Probable phenylalanyl-tRNA synthetase beta chain O... [more]
SYFB_DROME7.693e-8561.29Probable phenylalanyl-tRNA synthetase beta chain O... [more]
SYFB_PONAB4.089e-7859.84Phenylalanyl-tRNA synthetase beta chain OS=Pongo a... [more]
SYFB_HUMAN4.089e-7859.84Phenylalanyl-tRNA synthetase beta chain OS=Homo sa... [more]
SYFB_MOUSE6.974e-7858.87Phenylalanyl-tRNA synthetase beta chain OS=Mus mus... [more]
SYFB_CAEEL9.109e-7857.26Phenylalanyl-tRNA synthetase beta chain OS=Caenorh... [more]
SYFB_DICDI1.608e-7455.56Phenylalanyl-tRNA synthetase beta chain OS=Dictyos... [more]
SYFB_CANAL1.409e-7056.05Phenylalanyl-tRNA synthetase beta chain OS=Candida... [more]
SYFB_SCHPO1.009e-6852.82Phenylalanyl-tRNA synthetase beta chain OS=Schizos... [more]
SYFB_YEAST3.969e-6549.80Phenylalanyl-tRNA synthetase beta chain OS=Sacchar... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010B05_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T3_B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884713 ID=CV884713; Name=CV884713; organism=Citrus sinensis; type=EST; length=753bp
GACGCTACCATGCCTACAGTGAGCGTGGGCAGGGATCGTCTATTCGCCGC
CTTAGGGAAATCCTACACAAAAGAAGAGTTTGAGGATCTGTGCTTCTGCT
TCGGAATCGAGCTCGACGATGTGACAACTGAAAAAGCGATCATTAGAAAA
GAGAAGCACTTAGATGAAGAAGGAGACGAAAATGATGAAGAAGTTATTTA
CAAAATTGAAGTTCCAGCCAACAGATATGATTTGCTTTGCCTCGAAGGGA
TTGCTCAAGCTCTCCGTGTTTTCAACAAGCAGCAGGAGATACCTAAGTAC
ACACTCTCAGATGTCAGCAAAGACTCCATGCTTCAAATGCATGTGAAGCC
TGAGACATCTTCAATTCGTCCATATGTCGTTTGTGCTGTTTTAAGAGACA
TCAGTTTTGATGAAGCTAGTTATAACAGCTTCATTGATCTTCAAGATAAG
CTTCATCAGAACATTTGCCGGCGAAGAACCCTTGTTGCAATTGGTACTCA
TGACTTGGACACGTTACAAGGCCCTTTCACGTATGAGGCTTTGCCACCAT
CACATATAAATTTTGTGCCACTGAAGCAGACAAGGGACTTCACAGCCGAT
GAGCTTATGGAGTTTTACAAATCAGATTTGAAACTGAAAAAGTATTTGCA
CATAATTGAGAATTCTCCTCTGTACCCTGTCTTATATGATCAGAATAGGA
CTGTTCTGTCATTACCACCAATTATTAATGGGGCCCATTCTGCAATCACC
CTA
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