CV884712

Overview
NameCV884712
Unique NameCV884712
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length944
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884712 vs. ExPASy Swiss-Prot
Match: CCA34_ARATH (Cyclin-A3-4 OS=Arabidopsis thaliana GN=CYCA3-4 PE=1 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 2.221e-53
Identity = 97/149 (65.10%), Postives = 122/149 (81.88%), Query Frame = -2
Query:  497 EADILKSLKFELGSPTVKTFLRRLTRVAQEDYNASNLQLEFLGYYLAELSLLDYACVKFLPSSVAASVIFLARFITQPSKHPWTASLQRYSGYKPSEIEGCVLVLHDLYLSRRGGNLQAVREKYKQHKFKCVATTPSSPEIPGCYFEDI 943
            EADIL +L+FELGSPT+KTFLRR TRVAQED+  S LQ+EFL  YL+ELS+LDY CVK+LPS ++AS +FLARFI +P +HPW   L+ Y+ YK ++++ CV ++HDLYLSRRG  L+AVR KYKQHK+KCVAT P SPE+P  +FEDI
Sbjct:  216 EADILLALQFELGSPTIKTFLRRFTRVAQEDFKDSQLQIEFLCCYLSELSMLDYTCVKYLPSLLSASAVFLARFIIRPKQHPWNQMLEEYTKYKAADLQVCVGIIHDLYLSRRGNTLEAVRNKYKQHKYKCVATMPVSPELPLAFFEDI 364          
BLAST of CV884712 vs. ExPASy Swiss-Prot
Match: CCA31_ARATH (Putative cyclin-A3-1 OS=Arabidopsis thaliana GN=CYCA3-1 PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.592e-51
Identity = 96/149 (64.43%), Postives = 120/149 (80.54%), Query Frame = -2
Query:  497 EADILKSLKFELGSPTVKTFLRRLTRVAQEDYNASNLQLEFLGYYLAELSLLDYACVKFLPSSVAASVIFLARFITQPSKHPWTASLQRYSGYKPSEIEGCVLVLHDLYLSRRGGNLQAVREKYKQHKFKCVATTPSSPEIPGCYFEDI 943
            EADIL +L+FELG+PT  TFLRR TRVAQED+  S+LQ+EFL  YL+ELS+LDY  VKFLPS+VAAS +FLARFI +P +HPW   L+ Y+ YK  +++ CV ++HDLYLSR+ G L+A+REKYKQHKFKCVAT P SPE+P   FED+
Sbjct:  205 EADILLALQFELGNPTSNTFLRRFTRVAQEDFEMSHLQMEFLCSYLSELSMLDYQSVKFLPSTVAASAVFLARFIIRPKQHPWNVMLEEYTRYKAGDLKECVAMIHDLYLSRKCGALEAIREKYKQHKFKCVATMPVSPELPLTVFEDV 353          
BLAST of CV884712 vs. ExPASy Swiss-Prot
Match: CCA32_ARATH (Cyclin-A3-2 OS=Arabidopsis thaliana GN=CYCA3-2 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.490e-49
Identity = 92/149 (61.74%), Postives = 119/149 (79.87%), Query Frame = -2
Query:  497 EADILKSLKFELGSPTVKTFLRRLTRVAQEDYNASNLQLEFLGYYLAELSLLDYACVKFLPSSVAASVIFLARFITQPSKHPWTASLQRYSGYKPSEIEGCVLVLHDLYLSRRGGNLQAVREKYKQHKFKCVATTPSSPEIPGCYFEDI 943
            EADIL +L+FELG PT+ TF+RR TRVAQ+D+   +LQLE L  YL+ELS+LDY  VKF+PS +AAS +FLARFI +P +HPW   L+ Y+ YK ++++ CV ++HDLYLSRRGG LQAVREKYK HKF+CVAT P SPE+P  ++ED+
Sbjct:  222 EADILLALQFELGRPTINTFMRRFTRVAQDDFKVPHLQLEPLCCYLSELSILDYKTVKFVPSLLAASAVFLARFIIRPKQHPWNQMLEEYTKYKAADLQVCVGIIHDLYLSRRGGALQAVREKYKHHKFQCVATMPVSPELPVTFWEDV 370          
BLAST of CV884712 vs. ExPASy Swiss-Prot
Match: CCNAL_DAUCA (G2/mitotic-specific cyclin C13-1 (Fragment) OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.705e-45
Identity = 88/149 (59.06%), Postives = 116/149 (77.85%), Query Frame = -2
Query:  497 EADILKSLKFELGSPTVKTFLRRLTRVAQEDYNASNLQLEFLGYYLAELSLLDYACVKFLPSSVAASVIFLARFITQPSKHPWTASLQRYSGYKPSEIEGCVLVLHDLYLSRRGGNLQAVREKYKQHKFKCVATTPSSPEIPGCYFEDI 943
            EAD+LK+LKFE+GSPTVKTFL  + R  QE+ +   L+ EFL  YLAELSLLDY C++F+PS +AASV FLARF  +P+ +PW+ +LQ+ SGYK  +++ CVL+LHDL + RRGG+L AVR+KYK+HKFKCV+T   +PEIP   F D+
Sbjct:  194 EADLLKTLKFEMGSPTVKTFLGFI-RAVQENPDVPKLKFEFLANYLAELSLLDYGCLEFVPSLIAASVTFLARFTIRPNVNPWSIALQKCSGYKSKDLKECVLLLHDLQMGRRGGSLSAVRDKYKKHKFKCVSTLSPAPEIPESIFNDV 341          
BLAST of CV884712 vs. ExPASy Swiss-Prot
Match: CCA32_ORYSJ (Cyclin-A3-2 OS=Oryza sativa subsp. japonica GN=CYCA3-2 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.908e-45
Identity = 84/151 (55.63%), Postives = 114/151 (75.50%), Query Frame = -2
Query:  491 EADILKSLKFELGSPTVKTFLRRLTRVAQEDYNASNLQLEFLGYYLAELSLLDYACVKFLPSSVAASVIFLARFITQPSKHPWTASLQRYSGYKPSEIEGCVLVLHDLYLSRRGGNLQAVREKYKQHKFKCVATTPSSPEIPGCYFEDIKD 943
            E+DILK L+FE+G+PT+KTFLRR TR  QED   S+L LEF+G YLAELSLLDY C++FLPS VAASV+F+A+    P  +PW+  +Q+ +GYK SE++ C+L +HDL L ++  NL A+R+KYKQHKFKCV+T     +IP  Y +D+ +
Sbjct:  235 ESDILKLLEFEMGNPTIKTFLRRFTRSCQEDKKRSSLLLEFMGSYLAELSLLDYGCLRFLPSVVAASVVFVAKLNIDPYTNPWSKKMQKLTGYKVSELKDCILAIHDLQLRKKCSNLTAIRDKYKQHKFKCVSTLLPPVDIPASYLQDLTE 385          
BLAST of CV884712 vs. ExPASy Swiss-Prot
Match: CCA33_ARATH (Cyclin-A3-3 OS=Arabidopsis thaliana GN=CYCA3-3 PE=2 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 1.764e-42
Identity = 85/149 (57.05%), Postives = 111/149 (74.50%), Query Frame = -2
Query:  497 EADILKSLKFELGSPTVKTFLRRLTRVAQEDYNASNLQLEFLGYYLAELSLLDYACVKFLPSSVAASVIFLARFITQPSKHPWTASLQRYSGYKPSEIEGCVLVLHDLYLSRRGGNLQAVREKYKQHKFKCVATTPSSPEIPGCYFEDI 943
            E DIL +L+FELG PT  TFLRR  RVAQED+   NLQLE L  YL+ELS+LDY+CVKF+PS +AAS +FLARFI  P++HPW+  L+  + YK ++++ CV ++ DLYLSR  G  +AVREKYKQHKF+ VA  P   E+P  ++ED+
Sbjct:  176 EEDILLALEFELGRPTTNTFLRRFIRVAQEDFKVPNLQLEPLCCYLSELSMLDYSCVKFVPSLLAASAVFLARFIILPNQHPWSQMLEECTKYKAADLQVCVEIMLDLYLSRSEGASKAVREKYKQHKFQYVAAIPVYQELPVTFWEDV 324          
BLAST of CV884712 vs. ExPASy Swiss-Prot
Match: CCA31_ORYSJ (Cyclin-A3-1 OS=Oryza sativa subsp. japonica GN=CYCA3-1 PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.264e-40
Identity = 80/151 (52.98%), Postives = 106/151 (70.20%), Query Frame = -2
Query:  491 EADILKSLKFELGSPTVKTFLRRLTRVAQEDYNASNLQLEFLGYYLAELSLLDYACVKFLPSSVAASVIFLARFITQPSKHPWTASLQRYSGYKPSEIEGCVLVLHDLYLSRRGGNLQAVREKYKQHKFKCVATTPSSPEIPGCYFEDIKD 943
            E DIL  LKFE+G+PT KTFLR   R +QED    +L LEF+  YLAELSLL+Y CV+ LPS VAASV+F+AR       +PW+  LQ  +GY+ SE++ C+  +HDL L+R+G +L A+R+KYKQH+FK V+T     EIP  YFED+ +
Sbjct:  223 ERDILNVLKFEMGNPTTKTFLRMFIRSSQEDDKYPSLPLEFMCSYLAELSLLEYGCVRLLPSVVAASVVFVARLTLDSDTNPWSKKLQEVTGYRASELKDCITCIHDLQLNRKGSSLMAIRDKYKQHRFKGVSTLLPPVEIPASYFEDLNE 373          
BLAST of CV884712 vs. ExPASy Swiss-Prot
Match: CCA14_ORYSJ (Cyclin-A1-4 OS=Oryza sativa subsp. japonica GN=CYCA1-4 PE=2 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 2.636e-38
Identity = 80/148 (54.05%), Postives = 105/148 (70.95%), Query Frame = -2
Query:  500 EADILKSLKFELGSPTVKTFLRRLTRVAQEDYNASNLQLEFLGYYLAELSLLDYACVKFLPSSVAASVIFLARFITQPSKHPWTASLQRYSGYKPSEIEGCVLVLHDLYLSRRGGNLQAVREKYKQHKFKCVATTPSSPEIPGCYFED 943
            EA +LK LKFE+ +PT K FLRR  R AQ  + A  L LEFL  Y+AELSLL+Y+ + ++PS +AAS IFLA+FI +P+++PW ++L  Y+ YKPS++  C   LH L+L   GGNL+AVREKY QHK+K VA   S P IP  +FED
Sbjct:  202 EASVLKYLKFEMTAPTTKCFLRRFLRAAQVCHEAPVLHLEFLANYIAELSLLEYSLICYVPSLIAASSIFLAKFILKPTENPWNSTLSFYTQYKPSDLCNCAKGLHRLFLVGPGGNLRAVREKYSQHKYKFVAKKYSPPSIPAEFFED 349          
BLAST of CV884712 vs. ExPASy Swiss-Prot
Match: CCA13_ORYSJ (Cyclin-A1-3 OS=Oryza sativa subsp. japonica GN=CYCA1-3 PE=3 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 1.308e-37
Identity = 80/148 (54.05%), Postives = 97/148 (65.54%), Query Frame = -2
Query:  500 EADILKSLKFELGSPTVKTFLRRLTRVAQEDYNASNLQLEFLGYYLAELSLLDYACVKFLPSSVAASVIFLARFITQPSKHPWTASLQRYSGYKPSEIEGCVLVLHDLYLSRRGGNLQAVREKYKQHKFKCVATTPSSPEIPGCYFED 943
            EA +L  LKFE+ +PT K FLRR  RVAQ       L LEFL  Y+AELSLL+Y  + + PS VAAS IFLA+FI QP+KHPW ++L  Y+ YK SE+  CV  LH L+    G NL A+REKY QHK+K VA  P  P IP  +F D
Sbjct:  341 EASVLNYLKFEMTAPTAKCFLRRFVRVAQVSDEDPALHLEFLANYVAELSLLEYNLLSYPPSLVAASAIFLAKFILQPAKHPWNSTLAHYTQYKSSELSDCVKALHRLFCVGPGSNLPAIREKYTQHKYKFVAKKPCPPSIPTEFFRD 488          
BLAST of CV884712 vs. ExPASy Swiss-Prot
Match: CCA11_ORYSJ (Cyclin-A1-1 OS=Oryza sativa subsp. japonica GN=CYCA1-1 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 2.232e-37
Identity = 80/148 (54.05%), Postives = 97/148 (65.54%), Query Frame = -2
Query:  500 EADILKSLKFELGSPTVKTFLRRLTRVAQEDYNASNLQLEFLGYYLAELSLLDYACVKFLPSSVAASVIFLARFITQPSKHPWTASLQRYSGYKPSEIEGCVLVLHDLYLSRRGGNLQAVREKYKQHKFKCVATTPSSPEIPGCYFED 943
            EA +L  LKFE+ +PT K FLRR  RVAQ       L LEFL  Y+AELSLL+Y  + + PS VAAS IFLA+FI QP+KHPW ++L  Y+ YK SE+  CV  LH L+    G NL A+REKY QHK+K VA  P  P IP  +F D
Sbjct:  358 EASVLNYLKFEVTAPTAKCFLRRFVRVAQVSDEDPALHLEFLANYVAELSLLEYNLLSYPPSLVAASAIFLAKFILQPTKHPWNSTLAHYTQYKSSELSDCVKALHRLFSVGPGSNLPAIREKYTQHKYKFVAKKPCPPSIPTEFFRD 505          
The following BLAST results are available for this feature:
BLAST of CV884712 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
CCA34_ARATH2.221e-5365.10Cyclin-A3-4 OS=Arabidopsis thaliana GN=CYCA3-4 PE=... [more]
CCA31_ARATH1.592e-5164.43Putative cyclin-A3-1 OS=Arabidopsis thaliana GN=CY... [more]
CCA32_ARATH1.490e-4961.74Cyclin-A3-2 OS=Arabidopsis thaliana GN=CYCA3-2 PE=... [more]
CCNAL_DAUCA1.705e-4559.06G2/mitotic-specific cyclin C13-1 (Fragment) OS=Dau... [more]
CCA32_ORYSJ2.908e-4555.63Cyclin-A3-2 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCA33_ARATH1.764e-4257.05Cyclin-A3-3 OS=Arabidopsis thaliana GN=CYCA3-3 PE=... [more]
CCA31_ORYSJ1.264e-4052.98Cyclin-A3-1 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCA14_ORYSJ2.636e-3854.05Cyclin-A1-4 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCA13_ORYSJ1.308e-3754.05Cyclin-A1-3 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCA11_ORYSJ2.232e-3754.05Cyclin-A1-1 OS=Oryza sativa subsp. japonica GN=CYC... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010B04_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T7_B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884712 ID=CV884712; Name=CV884712; organism=Citrus sinensis; type=EST; length=944bp
GGTCATATTGCAGAGAACTGCAATTCAATCTCATTAGCTGGCTAAAAGTG
TTTATATGATGCTTCCTCATGGAGTTGATTTATACAAATGAGAATTTACA
TCATTCAACTTGTGAACTAAAGAAACACATACTAAAACTAATAAGAAGTC
TAGCCGTCAACATGGCCCCCCAGCATTTCTCAAACAATTAGAAATCCCCT
TCTCTAGCAGAGAAAGATGTTCCAATGTCACTATTAGTAGCTGCTTGCAT
TACCAGTGCCATTCATACAATTCAAAAGTCTCTAATCACCAGAGTGCTAG
CAATGACAAGAGCTGCTCCTCCCAGCATTTCACCACAAGCAATCAATTTC
AAAGATCTCTTCCACCAATAGAGACCAGTGATATGCTCACTAAAAAATCA
ATCTTCTGAGTTAGAACACTAGTTAGCAACTTTTAAACCAGATCTCTTTT
GCCAATAATAACTCAAATAACAAATGCCAGTCCAACTTCAATCTTTGATA
TCTTCAAAGTAACAACCAGGTATCTCTGGAGAAGAAGGGGTGGTTGCCAC
ACATTTGAACTTATGTTGCTTGTATTTTTCTCTTACAGCTTGCAAATTCC
CTCCTCTTCTACTCAAATAGAGGTCATGTAGGACAAGAACACAGCCTTCT
ATTTCAGATGGTTTGTATCCAGAGTATCGTTGCAAGCTAGCAGTCCAGGG
ATGCTTTGATGGTTGGGTAATGAATCTTGCCAGGAATATAACAGATGCAG
CAACTGAAGAGGGCAAAAATTTCACACAAGCATAATCTAATAGACTCAGT
TCTGCAAGATAGTATCCAAGGAACTCTAGTTGCAAATTGGAAGCATTGTA
ATCCTCTTGTGCAACCCTGGTTAATCGCCTCAAAAATGTCTTGACAGTGG
GACTTCCCAATTCAAACTTCAAGGACTTGAGTATATCGGCCTCC
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