CV884711

Overview
NameCV884711
Unique NameCV884711
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length801
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884711 vs. ExPASy Swiss-Prot
Match: CCA32_ARATH (Cyclin-A3-2 OS=Arabidopsis thaliana GN=CYCA3-2 PE=2 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 5.349e-71
Identity = 126/165 (76.36%), Postives = 150/165 (90.91%), Query Frame = 1
Query:  307 DIDARSDDPQICGAYVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELGSPTVKTFLRRLTRVAQED 801
            DID+RSDDPQ+CG YV DIY+YL  +EV PK+RPLPDY+EKVQKDV+ +MRGVLVDWLVEVAEEYKL S+TLYLT+S+IDRFLSL  +N+QKLQL+GVS+MLIASKYEEISPP V+DFCYITDNT++K +VVKMEADIL +L+FELG PT+ TF+RR TRVAQ+D
Sbjct:   88 DIDSRSDDPQMCGPYVADIYEYLRQLEVKPKQRPLPDYIEKVQKDVTPSMRGVLVDWLVEVAEEYKLGSETLYLTVSHIDRFLSLKTVNKQKLQLVGVSAMLIASKYEEISPPKVDDFCYITDNTFSKQDVVKMEADILLALQFELGRPTINTFMRRFTRVAQDD 252          
BLAST of CV884711 vs. ExPASy Swiss-Prot
Match: CCA31_ARATH (Putative cyclin-A3-1 OS=Arabidopsis thaliana GN=CYCA3-1 PE=3 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 3.467e-70
Identity = 128/165 (77.58%), Postives = 148/165 (89.70%), Query Frame = 1
Query:  307 DIDARSDDPQICGAYVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELGSPTVKTFLRRLTRVAQED 801
            DID RSDDPQ+CG YVT I++YL  +EV  K RPL DY+EK+QKDV++NMRGVLVDWLVEVAEEYKL+SDTLYL +SYIDRFLSL  +N+Q+LQLLGV+SMLIASKYEEI+PPNV+DFCYITDNTYTK E+VKMEADIL +L+FELG+PT  TFLRR TRVAQED
Sbjct:   73 DIDTRSDDPQMCGPYVTSIFEYLRQLEV--KSRPLVDYIEKIQKDVTSNMRGVLVDWLVEVAEEYKLLSDTLYLAVSYIDRFLSLKTVNKQRLQLLGVTSMLIASKYEEITPPNVDDFCYITDNTYTKQEIVKMEADILLALQFELGNPTSNTFLRRFTRVAQED 235          
BLAST of CV884711 vs. ExPASy Swiss-Prot
Match: CCA34_ARATH (Cyclin-A3-4 OS=Arabidopsis thaliana GN=CYCA3-4 PE=1 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 1.044e-66
Identity = 140/253 (55.34%), Postives = 163/253 (64.43%), Query Frame = 1
Query:   46 MADQENFVRVTXXXXXXXXXXXXXLEQPAKKKRVVLGEXXXXXXXXXXXXXXXKAEPRXXXXXXXXXXXXXXXXXXXXXXXXXYADIDIDARSDDPQICGAYVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIAS-KYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELGSPTVKTFLRRLTRVAQED 801
            MA+ +N  R+T              E P  KKRVVLGE               +                              A + I++RS DPQ+C  + +DI  YL  ME  PK RPLPDY+EKVQ D++ +MR VLVDWLVEVAEEYKLVSDTLYLTISY+DRFLS+  +NRQKLQL+GVS+MLIAS KYEEI PP VEDFCYITDNT+TK EVV MEADIL +L+FELGSPT+KTFLRR TRVAQED
Sbjct:    1 MAENQNCARMTRAAAKRKASSMALDENPVSKKRVVLGELPNMSNVVAVPNQERET-------LKAKTSVNTSKRQMKKALMIPEASVLIESRSVDPQMCEPFASDICAYLREMEGKPKHRPLPDYIEKVQSDLTPHMRAVLVDWLVEVAEEYKLVSDTLYLTISYVDRFLSVKPINRQKLQLVGVSAMLIASRKYEEIGPPKVEDFCYITDNTFTKQEVVSMEADILLALQFELGSPTIKTFLRRFTRVAQED 246          
BLAST of CV884711 vs. ExPASy Swiss-Prot
Match: CCA31_ORYSJ (Cyclin-A3-1 OS=Oryza sativa subsp. japonica GN=CYCA3-1 PE=3 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 2.571e-65
Identity = 123/165 (74.55%), Postives = 135/165 (81.82%), Query Frame = 1
Query:  307 DIDARSDDPQICGAYVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELGSPTVKTFLRRLTRVAQED 801
            D +    DPQ+C  Y +DI  YL SMEV  KRRP  DY+E VQ DV+ANMRG+LVDWLVEVAEEYKLVSDTLYLT+SYIDRFLS   +NRQKLQLLGVS+MLIASKYEEISPPNVEDFCYITDNTY K EVVKME DIL  LKFE+G+PT KTFLR   R +QED
Sbjct:   89 DDEEGEGDPQLCAPYASDINSYLRSMEVQAKRRPAADYIETVQVDVTANMRGILVDWLVEVAEEYKLVSDTLYLTVSYIDRFLSAKSINRQKLQLLGVSAMLIASKYEEISPPNVEDFCYITDNTYMKQEVVKMERDILNVLKFEMGNPTTKTFLRMFIRSSQED 253          
BLAST of CV884711 vs. ExPASy Swiss-Prot
Match: CCA33_ARATH (Cyclin-A3-3 OS=Arabidopsis thaliana GN=CYCA3-3 PE=2 SV=2)

HSP 1 Score: 243.047 bits (619), Expect = 1.411e-63
Identity = 117/165 (70.91%), Postives = 139/165 (84.24%), Query Frame = 1
Query:  307 DIDARSDDPQICGAYVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELGSPTVKTFLRRLTRVAQED 801
            DIDARSDDPQ+CG YV+DIY+YL  +EV PK RPL DY+EK+Q+D++ + RGVLVDWLVEVAEE++LVS+TLYLT+SYIDRFLSL ++N   LQL+GVS+M IASKYEE   P VEDFCYIT NTYTK +V+KME DIL +L+FELG PT  TFLRR  RVAQED
Sbjct:   42 DIDARSDDPQMCGLYVSDIYEYLRELEVKPKLRPLHDYIEKIQEDITPSKRGVLVDWLVEVAEEFELVSETLYLTVSYIDRFLSLKMVNEHWLQLVGVSAMFIASKYEEKRRPKVEDFCYITANTYTKQDVLKMEEDILLALEFELGRPTTNTFLRRFIRVAQED 206          
BLAST of CV884711 vs. ExPASy Swiss-Prot
Match: CCNAL_DAUCA (G2/mitotic-specific cyclin C13-1 (Fragment) OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.725e-61
Identity = 115/166 (69.28%), Postives = 141/166 (84.94%), Query Frame = 1
Query:  304 IDIDARSDDPQICGAYVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELGSPTVKTFLRRLTRVAQED 801
            +D   + DDPQ+C AYV+D+Y+YL  ME++ KRRP+ +Y+E+VQKDV++NMRGVLVDWLVEV+ EYKL+ +TLYL ISY+DR+LS+NVLNRQKLQLLGVSS LIASKYEEI P NV DF  ITDNTY++ EVVKMEAD+LK+LKFE+GSPTVKTFL    R  QE+
Sbjct:   59 VDFGEKFDDPQMCSAYVSDVYEYLKQMEMETKRRPMMNYIEQVQKDVTSNMRGVLVDWLVEVSLEYKLLPETLYLAISYVDRYLSVNVLNRQKLQLLGVSSFLIASKYEEIKPKNVADFVDITDNTYSQQEVVKMEADLLKTLKFEMGSPTVKTFL-GFIRAVQEN 223          
BLAST of CV884711 vs. ExPASy Swiss-Prot
Match: CCA32_ORYSJ (Cyclin-A3-2 OS=Oryza sativa subsp. japonica GN=CYCA3-2 PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 8.011e-59
Identity = 110/158 (69.62%), Postives = 133/158 (84.18%), Query Frame = 1
Query:  328 DPQICGAYVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELGSPTVKTFLRRLTRVAQED 801
            DPQ    Y +DIY YL SMEV+ +R+   DY+E VQ DV+ANMR +LVDWLVEVA+EYKLV+DTLYL +SY+DR+LS + L R +LQLLGV +MLIA+KYEEISPP+VEDFCYITDNTYT+ EVVKME+DILK L+FE+G+PT+KTFLRR TR  QED
Sbjct:  112 DPQ----YASDIYTYLRSMEVEARRQSAADYIEAVQVDVTANMRAILVDWLVEVADEYKLVADTLYLAVSYLDRYLSAHPLRRNRLQLLGVGAMLIAAKYEEISPPHVEDFCYITDNTYTRQEVVKMESDILKLLEFEMGNPTIKTFLRRFTRSCQED 265          
BLAST of CV884711 vs. ExPASy Swiss-Prot
Match: CCA11_ARATH (Cyclin-A1-1 OS=Arabidopsis thaliana GN=CYCA1-1 PE=1 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 5.373e-55
Identity = 100/163 (61.35%), Postives = 134/163 (82.21%), Query Frame = 1
Query:  304 IDIDARSDDPQICGAYVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELGSPTVKTFLRRLTRVA 792
            ++ID+ + DPQ+C  +  DIY++L + E   K+RP  DY+E+VQKDV+++MRG+LVDWL+EV+EEY+LV +TLYLT++YIDR+LS NV++RQKLQLLGV+ M+IA+KYEEI  P VE+FCYITDNTY KDEV+ ME+D+L  LKFE+ +PT K FLRR  R A
Sbjct:  179 VNIDSNNGDPQLCATFACDIYKHLRASEA--KKRPDVDYMERVQKDVNSSMRGILVDWLIEVSEEYRLVPETLYLTVNYIDRYLSGNVISRQKLQLLGVACMMIAAKYEEICAPQVEEFCYITDNTYLKDEVLDMESDVLNYLKFEMTAPTTKCFLRRFVRAA 339          
BLAST of CV884711 vs. ExPASy Swiss-Prot
Match: CCA14_ORYSJ (Cyclin-A1-4 OS=Oryza sativa subsp. japonica GN=CYCA1-4 PE=2 SV=2)

HSP 1 Score: 211.46 bits (537), Expect = 4.549e-54
Identity = 100/164 (60.98%), Postives = 128/164 (78.05%), Query Frame = 1
Query:  304 IDIDARSDDPQICGAYVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELGSPTVKTFLRRLTRVAQ 795
            +DID   +DPQ+C     DIY++L   E   K+RP  D+VE +QK++  +MR VL+DWLVEV EEY+LV +TLYLT++YIDR+LS  V+NR+K+QLLGV+ +LIASKYEEI PP VE+ CYI+DNTYTKDEV+KMEA +LK LKFE+ +PT K FLRR  R AQ
Sbjct:   69 VDIDNNHEDPQLCATLAFDIYKHLRVAET--KKRPSTDFVETIQKNIDTSMRAVLIDWLVEVTEEYRLVPETLYLTVNYIDRYLSSKVINRRKMQLLGVACLLIASKYEEICPPQVEELCYISDNTYTKDEVLKMEASVLKYLKFEMTAPTTKCFLRRFLRAAQ 230          
BLAST of CV884711 vs. ExPASy Swiss-Prot
Match: CCA12_ORYSJ (Cyclin-A1-2 OS=Oryza sativa subsp. japonica GN=CYCA1-2 PE=3 SV=2)

HSP 1 Score: 210.305 bits (534), Expect = 1.013e-53
Identity = 99/163 (60.74%), Postives = 129/163 (79.14%), Query Frame = 1
Query:  307 DIDARSDDPQICGAYVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELGSPTVKTFLRRLTRVAQ 795
            D+D   +DPQ+C    +DIY  +H  E + ++RP  D++E +QKDV+ +MR +L+DWLVEVAEEY+LV DTLYLT++YIDR+LS N +NRQ+LQLLGV+ MLIA+KYEEI  P VE+FCYITDNTY +DEV++MEA +L  LKFE+ +PT K FLRR  RVAQ
Sbjct:  196 DVDNNYEDPQLCATLASDIY--MHLREAETRKRPSTDFMETIQKDVNPSMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNEINRQRLQLLGVACMLIAAKYEEICAPQVEEFCYITDNTYFRDEVLEMEASVLNYLKFEVTAPTAKCFLRRFVRVAQ 356          
The following BLAST results are available for this feature:
BLAST of CV884711 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 164
Match NameE-valueIdentityDescription
CCA32_ARATH5.349e-7176.36Cyclin-A3-2 OS=Arabidopsis thaliana GN=CYCA3-2 PE=... [more]
CCA31_ARATH3.467e-7077.58Putative cyclin-A3-1 OS=Arabidopsis thaliana GN=CY... [more]
CCA34_ARATH1.044e-6655.34Cyclin-A3-4 OS=Arabidopsis thaliana GN=CYCA3-4 PE=... [more]
CCA31_ORYSJ2.571e-6574.55Cyclin-A3-1 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCA33_ARATH1.411e-6370.91Cyclin-A3-3 OS=Arabidopsis thaliana GN=CYCA3-3 PE=... [more]
CCNAL_DAUCA1.725e-6169.28G2/mitotic-specific cyclin C13-1 (Fragment) OS=Dau... [more]
CCA32_ORYSJ8.011e-5969.62Cyclin-A3-2 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCA11_ARATH5.373e-5561.35Cyclin-A1-1 OS=Arabidopsis thaliana GN=CYCA1-1 PE=... [more]
CCA14_ORYSJ4.549e-5460.98Cyclin-A1-4 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCA12_ORYSJ1.013e-5360.74Cyclin-A1-2 OS=Oryza sativa subsp. japonica GN=CYC... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010B04_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T3_B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884711 ID=CV884711; Name=CV884711; organism=Citrus sinensis; type=EST; length=801bp
CTCCTCCTCTCTTGAGTCCCAAATTGAGTGAACATTAGTTTGCTAATGGC
GGATCAAGAGAACTTTGTTAGGGTCACACGGGCAGCGGCCAAGAAGAGGG
CGGCCTCCGGAAGTGCCTTGGAGCAGCCGGCCAAAAAGAAGCGGGTGGTC
TTGGGGGAGTTGCCCACCAACACAAACGTCGTCGTCTCGGTGAATCCGAG
TCTCAAGGCTGAGCCGCGTAAAGCCAAGGCCAAAGCGAAGAAGGCTTTGC
TAACGGAAAAGACCAAGGCCAAGGCCAAGACCAAGGCAACCGAGTATGCT
GATATTGACATTGATGCCAGATCCGACGACCCTCAGATCTGTGGAGCCTA
CGTCACCGACATTTACCAGTATCTTCATTCCATGGAGGTGGATCCAAAGA
GAAGGCCTTTGCCTGATTACGTAGAGAAGGTTCAGAAGGATGTGAGTGCA
AACATGAGAGGGGTGTTGGTTGACTGGTTGGTGGAGGTTGCAGAGGAATA
CAAGCTTGTTTCAGACACCCTCTATCTCACCATTTCGTATATTGATAGGT
TCCTTTCTTTGAATGTTCTCAATCGCCAGAAGCTTCAGCTGCTTGGGGTT
TCTTCAATGCTCATTGCCTCAAAGTATGAGGAAATTAGCCCTCCAAATGT
GGAAGATTTTTGCTACATTACGGATAATACCTACACCAAAGACGAGGTGG
TGAAAATGGAGGCCGATATACTCAAGTCCTTGAAGTTTGAATTGGGAAGT
CCCACTGTCAAGACATTTTTGAGGCGATTAACCAGGGTTGCACAAGAGGA
T
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