CV884708

Overview
NameCV884708
Unique NameCV884708
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length528
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884708_ssr11 microsatellite CV884708_ssr11:11..52. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13008 contig Csv1_Contig13008:33..562. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884708 vs. ExPASy Swiss-Prot
Match: FIL1_ANTMA (Stamen-specific protein FIL1 OS=Antirrhinum majus GN=FIL1 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.044e-22
Identity = 54/98 (55.10%), Postives = 70/98 (71.43%), Query Frame = -3
Query:  230 MAAIKSMVSLSTKXXXXXXXXXXXVQTQM---THSQSCTSELTNLNSCAPYVVPGVATTTPSSDCCAALQSVDRDCFCNTVRIAARLPSQCNLPPLSC 514
            MAA+KS+V L               Q+Q+   + +Q+C++ L NLN+CAP+VV G ATT PSSDCC ALQSVD +C CNT+RIA+R+P+QCNLPPLSC
Sbjct:    1 MAAMKSIVPL-------VMLTVLVAQSQLITQSEAQTCSASLANLNACAPFVVLGAATT-PSSDCCTALQSVDHECLCNTLRIASRVPAQCNLPPLSC 90          
BLAST of CV884708 vs. ExPASy Swiss-Prot
Match: 108_SOLLC (Protein 108 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.763e-19
Identity = 40/64 (62.50%), Postives = 54/64 (84.38%), Query Frame = -3
Query:  227 QSCTSELTNLNSCAPYVVPGVATTTPSSDCCAALQSVDRDCFCNTVRIAARLPSQCNLPPLSCT 418
            QSCT+ LT LN CAP++VPG  + T S++CC A+QS++ DC CNT+RIAA++P+QCNLPPLSC+
Sbjct:   39 QSCTASLTGLNVCAPFLVPG--SPTASTECCNAVQSINHDCMCNTMRIAAQIPAQCNLPPLSCS 100          
BLAST of CV884708 vs. ExPASy Swiss-Prot
Match: MEN8_SILLA (Protein MEN-8 OS=Silene latifolia GN=MEN-8 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.371e-18
Identity = 38/61 (62.30%), Postives = 46/61 (75.41%), Query Frame = -3
Query:  230 CTSELTNLNSCAPYVVPGVATTTPSSDCCAALQSVDRDCFCNTVRIAARLPSQCNLPPLSC 412
            C S+L NLN CAPYVVPG   T PS +CCAAL  V+ DC CNT+R+A++LPS CNL  L+C
Sbjct:   38 CASQLGNLNVCAPYVVPGAVNTNPSQECCAALSGVNHDCMCNTLRVASQLPSSCNLAALNC 98          
BLAST of CV884708 vs. ExPASy Swiss-Prot
Match: A9_BRANA (Tapetum-specific protein A9 OS=Brassica napus GN=A9 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.961e-14
Identity = 30/67 (44.78%), Postives = 41/67 (61.19%), Query Frame = -3
Query:  230 MTHSQSCTSELTNLNSCAPYVVPGVATTTPSSDCCAALQSVDRDCFCNTVRIAARLPSQCNLPPLSC 430
            M  +Q C   L+N+  CAP V+PG     P+S+CC ALQ+ ++DC CN +R A    + CNLP L C
Sbjct:   26 MVRAQQCLDNLSNMQVCAPLVLPGAVNPAPNSNCCIALQATNKDCICNALRAATTFTTTCNLPSLDC 92          
BLAST of CV884708 vs. ExPASy Swiss-Prot
Match: LIM3_LILLO (Protein LIM3 OS=Lilium longiflorum GN=LIM3 PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.017e-13
Identity = 31/70 (44.29%), Postives = 49/70 (70.00%), Query Frame = -3
Query:  230 QTQMTHSQSCTSELTNLNSCAPYVVPGVATTTPSSDCCAALQSVDRDCFCNTVRIAARLPSQCNLPPLSC 439
            Q+++  +Q+C++ +  L SC PYV+PG    TPS+ CC+A+Q+V+  C C T+ I + LP  C+LPP+SC
Sbjct:   19 QSEIGLAQNCSAAIGGLMSCGPYVLPG-NQLTPSTQCCSAIQAVNHGCLCETINIISSLPGHCSLPPVSC 87          
BLAST of CV884708 vs. ExPASy Swiss-Prot
Match: A9_ARATH (Tapetum-specific protein A9 OS=Arabidopsis thaliana GN=A9 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.265e-13
Identity = 30/64 (46.88%), Postives = 41/64 (64.06%), Query Frame = -3
Query:  230 SQSCTSELTNLNSCAPYVVPGVATTTPSSDCCAALQSVDRDCFCNTVRIAARLPSQCNLPPLSC 421
            +Q C  EL+N+  CAP ++PG      +S+CCAALQ+ ++DC CN +R A  L S CNLP   C
Sbjct:   24 AQQCRDELSNVQVCAPLLLPGAVNPAANSNCCAALQATNKDCLCNALRAATTLTSLCNLPSFDC 87          
BLAST of CV884708 vs. ExPASy Swiss-Prot
Match: M7_LILHE (Protein M7 OS=Lilium henryi GN=M7 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.120e-11
Identity = 27/64 (42.19%), Postives = 43/64 (67.19%), Query Frame = -3
Query:  230 SQSCTSELTNLNSCAPYVVPGVATTTPSSDCCAALQSVDRDCFCNTVRIAARLPSQCNLPPLSC 421
            SQ+C++ +  L +C PYV+PG +   PS  CC+AL++V+  C C T+ I + LP  C+LP ++C
Sbjct:   25 SQNCSAAIGELMTCGPYVLPG-SNGAPSEQCCSALKAVNHGCLCETINIISSLPDHCSLPAVNC 87          
BLAST of CV884708 vs. ExPASy Swiss-Prot
Match: LIM2_LILLO (Protein LIM2 OS=Lilium longiflorum GN=LIM2 PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 4.723e-11
Identity = 27/64 (42.19%), Postives = 42/64 (65.62%), Query Frame = -3
Query:  230 SQSCTSELTNLNSCAPYVVPGVATTTPSSDCCAALQSVDRDCFCNTVRIAARLPSQCNLPPLSC 421
            SQ+C++ +  L +C PYV+PG     PS  CC+AL++V+  C C T+ I + LP  C+LP ++C
Sbjct:   26 SQNCSAAIGELMTCGPYVLPG-NNGAPSEQCCSALRAVNHGCLCETINIISSLPDHCSLPAVNC 88          
BLAST of CV884708 vs. ExPASy Swiss-Prot
Match: LIM1_LILLO (Protein LIM1 OS=Lilium longiflorum GN=LIM1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.723e-11
Identity = 27/64 (42.19%), Postives = 42/64 (65.62%), Query Frame = -3
Query:  230 SQSCTSELTNLNSCAPYVVPGVATTTPSSDCCAALQSVDRDCFCNTVRIAARLPSQCNLPPLSC 421
            SQ+C++ +  L +C PYV+PG     PS  CC+AL++V+  C C T+ I + LP  C+LP ++C
Sbjct:   26 SQNCSAAIGELMTCGPYVLPG-NNGAPSEQCCSALRAVNHGCLCETINIISSLPDHCSLPAVNC 88          
The following BLAST results are available for this feature:
BLAST of CV884708 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
FIL1_ANTMA2.044e-2255.10Stamen-specific protein FIL1 OS=Antirrhinum majus ... [more]
108_SOLLC2.763e-1962.50Protein 108 OS=Solanum lycopersicum PE=2 SV=1[more]
MEN8_SILLA1.371e-1862.30Protein MEN-8 OS=Silene latifolia GN=MEN-8 PE=3 SV... [more]
A9_BRANA5.961e-1444.78Tapetum-specific protein A9 OS=Brassica napus GN=A... [more]
LIM3_LILLO1.017e-1344.29Protein LIM3 OS=Lilium longiflorum GN=LIM3 PE=3 SV... [more]
A9_ARATH2.265e-1346.88Tapetum-specific protein A9 OS=Arabidopsis thalian... [more]
M7_LILHE2.120e-1142.19Protein M7 OS=Lilium henryi GN=M7 PE=2 SV=1[more]
LIM2_LILLO4.723e-1142.19Protein LIM2 OS=Lilium longiflorum GN=LIM2 PE=3 SV... [more]
LIM1_LILLO4.723e-1142.19Protein LIM1 OS=Lilium longiflorum GN=LIM1 PE=3 SV... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010B02_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T7_B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884708 ID=CV884708; Name=CV884708; organism=Citrus sinensis; type=EST; length=528bp
TTAATATATCATTATTATTATTATTATTATTATTATTATTATTATTATTA
TTGCTCTTCAATTCATATAACCAAGTACTCTGATCTTGACTGACAGTTCA
GTCACGTATCAGACTCTTACATAAAACGCGACATTGAAAATTAAAAAAAA
AAAAAAACCGCCATTTTTTGCTGACAACTCTCGCTTGGGCTCCAAGCATT
GATTCTTGGCCTGCATCAAATCAAGGAGTGCAACTGAGAGGTGGGAGATT
GCATTGGCTAGGAAGGCGAGCCGCGATCCTCACGGTGTTGCAGAAGCAGT
CGCGATCCACAGACTGGAGGGCGGCGCAGCAGTCAGAGGAAGGAGTTGTG
GTCGCGACGCCAGGGACCACATACGGGGCACAGGAGTTGAGGTTGGTTAG
CTCAGACGTGCAGCTCTGTGAATGAGTCATCTGGGTTTGCACTGCTACCG
CTATAAGCAGAAGAAGCAATGCAGCTTTGGTGCTGAGGGAAACCATTGAC
TTGATTGCCGCCATCACTAATTGATCCT
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