CV884706

Overview
NameCV884706
Unique NameCV884706
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13243 contig Csv1_Contig13243:160..900. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884706 vs. ExPASy Swiss-Prot
Match: COL1_ARATH (Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana GN=COL1 PE=1 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.575e-42
Identity = 114/255 (44.71%), Postives = 138/255 (54.12%), Query Frame = -1
Query:   16 DTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFXXXXXXXXXXXXXXAEIHSANPLARRHQRVPILPISGSVYGG-------RTGATP------XXXXXXXXXXXEAASWLLLSXXXXXXXXXXXXXXXXXXXXGEVDEYLDLVDYTGGN-QYLDQYSNGNNNQQQHGVAQKGYVGDSVVPVQCELANKDHHRHQQNFQMGLDYDSSKAGYSYNGXXXXXXXXXSTDLGVVPEST 738
            DTCR+AACTVYC+AD AYLCS+CD++VH ANR+A RHERV VC+SCE+APAAF              +EIHSANPLARRHQRVPILPIS   Y          T  T                  EAASWLL +                       DE+L+LVDY+  + Q+ DQ    N  Q    V Q+ Y  D VVP+Q E+ +K  ++ QQNFQ+ ++  S  A  S NG         S DLGVVPEST
Sbjct:   13 DTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRVCQSCERAPAAFFCKADAASLCTTCDSEIHSANPLARRHQRVPILPISEYSYSSTATNHSCETTVTDPENRLVLGQEEEDEDEAEAASWLLPNSGKNSGNNNGFSIG---------DEFLNLVDYSSSDKQFTDQ---SNQYQLDCNVPQRSYGEDGVVPLQIEV-SKGMYQEQQNFQLSINCGSWGALRSSNGSLSHMVNVSSMDLGVVPEST 254          
BLAST of CV884706 vs. ExPASy Swiss-Prot
Match: COL2_ARATH (Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana GN=COL2 PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.021e-41
Identity = 111/246 (45.12%), Postives = 132/246 (53.66%), Query Frame = -1
Query:   16 DTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFXXXXXXXXXXXXXXAEIHSANPLARRHQRVPILPISGSVYGGRTGATPXXXXXXXXXXXEAASWLLLSXXXXXXXXXXXXXXXXXXXXGEVDEYLDLVDYTGG--NQYLDQYSNGNNNQQQHGVAQKGYVGDSVVPVQCELANKDHHRHQQNFQMGLDYD-SSKAGYSYNGXXXXXXXXXST--DLGVVPEST 738
            DTCR+AACTVYC+AD AYLC+ CD+RVH ANRVA RHERV VC+SCE APAAF              AEIHSANPLARRHQRVPILP+S +       A             E ASWLL +                        EYLDLVDY+    NQ+ D       NQ  H   Q+ + GD VVP+Q E +     + QQNFQ+G++Y  SS A Y+ N           +  D+ VVPEST
Sbjct:   17 DTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERVRVCQSCESAPAAFLCKADAASLCTACDAEIHSANPLARRHQRVPILPLSANSCSSM--APSETDADNDEDDREVASWLLPNPGKNIGNQNNGFLFGV--------EYLDLVDYSSSMDNQFED-------NQYTH--YQRSFGGDGVVPLQVEESTSHLQQSQQNFQLGINYGFSSGAHYNNNSLKDLNHSASVSSMDISVVPEST 243          
BLAST of CV884706 vs. ExPASy Swiss-Prot
Match: CONS_ARATH (Zinc finger protein CONSTANS OS=Arabidopsis thaliana GN=CO PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.742e-41
Identity = 108/260 (41.54%), Postives = 129/260 (49.62%), Query Frame = -1
Query:   16 DTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFXXXXXXXXXXXXXXAEIHSANPLARRHQRVPILPISGSVYGGRTG-----------------ATPXXXXXXXXXXXEAASWLLLSXXXXXXXXXXXXXXXXXXXXGEVDEYLDLVDYTGGNQY--LDQYSNGNNNQQQHGVAQKGYVGDSVVPVQCELANKDHHRHQQNFQMGLDYDSSKAGYSYNGXXXXXXXXXSTDLGVVPEST 738
            DTCR+ ACTVYC AD AYLC +CD++VH ANRVA RH+RV VCESCE+APAAF              +E+HSANPLARRHQRVPILPISG+ +   T                                E ASWL  +                       DEYL+LVDY     Y    +YS    +QQ   V Q  Y GD VVP++ E +      +QQNFQ  + Y SS   Y+ NG         S + GVVPEST
Sbjct:   21 DTCRSNACTVYCHADSAYLCMSCDAQVHSANRVASRHKRVRVCESCERAPAAFLCEADDASLCTACDSEVHSANPLARRHQRVPILPISGNSFSSMTTTHHQSEKTMTDPEKRLVVDQEEGEEGDKDAKEVASWLFPNSDKNNNNQNNGLLFS--------DEYLNLVDYNSSMDYKFTGEYS---QHQQNCSVPQTSYGGDRVVPLKLEESRGHQCHNQQNFQFNIKYGSSGTHYNDNGSINHNAYISSMETGVVPEST 269          
BLAST of CV884706 vs. ExPASy Swiss-Prot
Match: COL3_ARATH (Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana GN=COL3 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.129e-23
Identity = 52/119 (43.70%), Postives = 70/119 (58.82%), Query Frame = -1
Query:  382 DTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFXXXXXXXXXXXXXXAEIHSANPLARRHQRVPILPISGSVYGGRTGATPXXXXXXXXXXXEAASWLL 738
            D+C++ A T++C+AD A+LC  CD ++H AN++A RHERV++CE CEQAPA                 +IHSANPL+RRH+RVPI P   +V G    A+              ASWLL
Sbjct:    9 DSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWLCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLSRRHERVPITPFYDAV-GPAKSASSSVNFVDEDGGDVTASWLL 126          
BLAST of CV884706 vs. ExPASy Swiss-Prot
Match: COL4_ARATH (Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.174e-21
Identity = 46/92 (50.00%), Postives = 61/92 (66.30%), Query Frame = -1
Query:  463 DTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFXXXXXXXXXXXXXXAEIHSANPLARRHQRVPILPISGSV 738
            D+C++A   +YC+ D A+LC +CDS+VH AN++A RH RV++CE CEQAPA                 +IHSANPLARRH+RVP+ P   SV
Sbjct:    7 DSCKSATAALYCRPDAAFLCLSCDSKVHAANKLASRHARVWMCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSV 98          
BLAST of CV884706 vs. ExPASy Swiss-Prot
Match: COL5_ARATH (Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana GN=COL5 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.908e-17
Identity = 42/85 (49.41%), Postives = 53/85 (62.35%), Query Frame = -1
Query:  484 DTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFXXXXXXXXXXXXXXAEIHSANPLARRHQRVPI 738
            D C++    V+C+ D A+LC ACD+R+H       RHERV+VCE CEQAPAA               A+IHSANPLA RH+RVP+
Sbjct:   23 DACKSVTAAVFCRVDSAFLCIACDTRIHSFT----RHERVWVCEVCEQAPAAVTCKADAAALCVSCDADIHSANPLASRHERVPV 103          
The following BLAST results are available for this feature:
BLAST of CV884706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
COL1_ARATH1.575e-4244.71Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis... [more]
COL2_ARATH1.021e-4145.12Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis... [more]
CONS_ARATH1.742e-4141.54Zinc finger protein CONSTANS OS=Arabidopsis thalia... [more]
COL3_ARATH8.129e-2343.70Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis... [more]
COL4_ARATH1.174e-2150.00Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis... [more]
COL5_ARATH3.908e-1749.41Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010B01_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T7_B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884706 ID=CV884706; Name=CV884706; organism=Citrus sinensis; type=EST; length=741bp
TCGATATGTCCTCATGGTTGATTCCGGTACCACTCCGAGATCGGTAGATG
AAACCGAGACACTGTGACTAATTGAACCGTTGTAGCTATATCCTGCTTTA
GATGAATCATAGTCCAATCCCATTTGAAAATTTTGCTGATGACGATGATG
ATCTTTGTTAGCTAATTCACACTGAACAGGCACAACACTGTCACCCACAT
AACCCTTTTGAGCAACACCGTGCTGTTGCTGATTATTGTTACCATTACTG
TACTGATCAAGGTACTGATTCCCACCAGTATAATCCACAAGGTCCAAGTA
CTCATCAACTTCCCCACCAAACAGAAACCCATTATTATTCCCATTATTAC
CATTACCGCAATTCTTCCCAGGATTACTCAACAGCAACCACGAAGCCGCT
TCTTCCTCGTCCTGGTCATCCTCATGATCTCCCTCCGGCGTCGCGCCGGT
CCTTCCCCCGTACACCGAGCCAGATATCGGAAGAATAGGGACCCGCTGGT
GGCGCCTTGCGAGAGGGTTTGCTGAGTGAATCTCAGCGTCACATGCAGCA
CAAAGCGACGCCGCGTCCGCCTTGCATAAGAAAGCAGCCGGGGCTTGTTC
GCAGGACTCGCACACGAACACGCGCTCATGTCTAAAGGCGACACGATTGG
CCACATGGACTCTGGAGTCGCATGCAGAGCAAAGATACGCCATATCAGCT
TTGCAGTAGACCGTGCATGCAGCTGCCCTGCAAGTGTCCCT
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