CV884706
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CV884706 vs. ExPASy Swiss-Prot
Match: COL1_ARATH (Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana GN=COL1 PE=1 SV=1) HSP 1 Score: 172.94 bits (437), Expect = 1.575e-42 Identity = 114/255 (44.71%), Postives = 138/255 (54.12%), Query Frame = -1 Query: 16 DTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFXXXXXXXXXXXXXXAEIHSANPLARRHQRVPILPISGSVYGG-------RTGATP------XXXXXXXXXXXEAASWLLLSXXXXXXXXXXXXXXXXXXXXGEVDEYLDLVDYTGGN-QYLDQYSNGNNNQQQHGVAQKGYVGDSVVPVQCELANKDHHRHQQNFQMGLDYDSSKAGYSYNGXXXXXXXXXSTDLGVVPEST 738 DTCR+AACTVYC+AD AYLCS+CD++VH ANR+A RHERV VC+SCE+APAAF +EIHSANPLARRHQRVPILPIS Y T T EAASWLL + DE+L+LVDY+ + Q+ DQ N Q V Q+ Y D VVP+Q E+ +K ++ QQNFQ+ ++ S A S NG S DLGVVPEST Sbjct: 13 DTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRVCQSCERAPAAFFCKADAASLCTTCDSEIHSANPLARRHQRVPILPISEYSYSSTATNHSCETTVTDPENRLVLGQEEEDEDEAEAASWLLPNSGKNSGNNNGFSIG---------DEFLNLVDYSSSDKQFTDQ---SNQYQLDCNVPQRSYGEDGVVPLQIEV-SKGMYQEQQNFQLSINCGSWGALRSSNGSLSHMVNVSSMDLGVVPEST 254
BLAST of CV884706 vs. ExPASy Swiss-Prot
Match: COL2_ARATH (Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana GN=COL2 PE=1 SV=1) HSP 1 Score: 170.244 bits (430), Expect = 1.021e-41 Identity = 111/246 (45.12%), Postives = 132/246 (53.66%), Query Frame = -1 Query: 16 DTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFXXXXXXXXXXXXXXAEIHSANPLARRHQRVPILPISGSVYGGRTGATPXXXXXXXXXXXEAASWLLLSXXXXXXXXXXXXXXXXXXXXGEVDEYLDLVDYTGG--NQYLDQYSNGNNNQQQHGVAQKGYVGDSVVPVQCELANKDHHRHQQNFQMGLDYD-SSKAGYSYNGXXXXXXXXXST--DLGVVPEST 738 DTCR+AACTVYC+AD AYLC+ CD+RVH ANRVA RHERV VC+SCE APAAF AEIHSANPLARRHQRVPILP+S + A E ASWLL + EYLDLVDY+ NQ+ D NQ H Q+ + GD VVP+Q E + + QQNFQ+G++Y SS A Y+ N + D+ VVPEST Sbjct: 17 DTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERVRVCQSCESAPAAFLCKADAASLCTACDAEIHSANPLARRHQRVPILPLSANSCSSM--APSETDADNDEDDREVASWLLPNPGKNIGNQNNGFLFGV--------EYLDLVDYSSSMDNQFED-------NQYTH--YQRSFGGDGVVPLQVEESTSHLQQSQQNFQLGINYGFSSGAHYNNNSLKDLNHSASVSSMDISVVPEST 243
BLAST of CV884706 vs. ExPASy Swiss-Prot
Match: CONS_ARATH (Zinc finger protein CONSTANS OS=Arabidopsis thaliana GN=CO PE=1 SV=1) HSP 1 Score: 169.474 bits (428), Expect = 1.742e-41 Identity = 108/260 (41.54%), Postives = 129/260 (49.62%), Query Frame = -1 Query: 16 DTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFXXXXXXXXXXXXXXAEIHSANPLARRHQRVPILPISGSVYGGRTG-----------------ATPXXXXXXXXXXXEAASWLLLSXXXXXXXXXXXXXXXXXXXXGEVDEYLDLVDYTGGNQY--LDQYSNGNNNQQQHGVAQKGYVGDSVVPVQCELANKDHHRHQQNFQMGLDYDSSKAGYSYNGXXXXXXXXXSTDLGVVPEST 738 DTCR+ ACTVYC AD AYLC +CD++VH ANRVA RH+RV VCESCE+APAAF +E+HSANPLARRHQRVPILPISG+ + T E ASWL + DEYL+LVDY Y +YS +QQ V Q Y GD VVP++ E + +QQNFQ + Y SS Y+ NG S + GVVPEST Sbjct: 21 DTCRSNACTVYCHADSAYLCMSCDAQVHSANRVASRHKRVRVCESCERAPAAFLCEADDASLCTACDSEVHSANPLARRHQRVPILPISGNSFSSMTTTHHQSEKTMTDPEKRLVVDQEEGEEGDKDAKEVASWLFPNSDKNNNNQNNGLLFS--------DEYLNLVDYNSSMDYKFTGEYS---QHQQNCSVPQTSYGGDRVVPLKLEESRGHQCHNQQNFQFNIKYGSSGTHYNDNGSINHNAYISSMETGVVPEST 269
BLAST of CV884706 vs. ExPASy Swiss-Prot
Match: COL3_ARATH (Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana GN=COL3 PE=1 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 8.129e-23 Identity = 52/119 (43.70%), Postives = 70/119 (58.82%), Query Frame = -1 Query: 382 DTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFXXXXXXXXXXXXXXAEIHSANPLARRHQRVPILPISGSVYGGRTGATPXXXXXXXXXXXEAASWLL 738 D+C++ A T++C+AD A+LC CD ++H AN++A RHERV++CE CEQAPA +IHSANPL+RRH+RVPI P +V G A+ ASWLL Sbjct: 9 DSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWLCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLSRRHERVPITPFYDAV-GPAKSASSSVNFVDEDGGDVTASWLL 126
BLAST of CV884706 vs. ExPASy Swiss-Prot
Match: COL4_ARATH (Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2) HSP 1 Score: 103.605 bits (257), Expect = 1.174e-21 Identity = 46/92 (50.00%), Postives = 61/92 (66.30%), Query Frame = -1 Query: 463 DTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFXXXXXXXXXXXXXXAEIHSANPLARRHQRVPILPISGSV 738 D+C++A +YC+ D A+LC +CDS+VH AN++A RH RV++CE CEQAPA +IHSANPLARRH+RVP+ P SV Sbjct: 7 DSCKSATAALYCRPDAAFLCLSCDSKVHAANKLASRHARVWMCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSV 98
BLAST of CV884706 vs. ExPASy Swiss-Prot
Match: COL5_ARATH (Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana GN=COL5 PE=2 SV=2) HSP 1 Score: 88.5817 bits (218), Expect = 3.908e-17 Identity = 42/85 (49.41%), Postives = 53/85 (62.35%), Query Frame = -1 Query: 484 DTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFXXXXXXXXXXXXXXAEIHSANPLARRHQRVPI 738 D C++ V+C+ D A+LC ACD+R+H RHERV+VCE CEQAPAA A+IHSANPLA RH+RVP+ Sbjct: 23 DACKSVTAAVFCRVDSAFLCIACDTRIHSFT----RHERVWVCEVCEQAPAAVTCKADAAALCVSCDADIHSANPLASRHERVPV 103 The following BLAST results are available for this feature:
BLAST of CV884706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CV884706 ID=CV884706; Name=CV884706; organism=Citrus sinensis; type=EST; length=741bpback to top |