CV884705
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CV884705 vs. ExPASy Swiss-Prot
Match: COL1_ARATH (Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana GN=COL1 PE=1 SV=1) HSP 1 Score: 176.792 bits (447), Expect = 1.099e-43 Identity = 114/261 (43.68%), Postives = 139/261 (53.26%), Query Frame = 1 Query: 4 TCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFXXXXXXXXXXXXXXXEIHSANPLARRHQRVPILPISGSVYGG-------RTGATP------XXXXXXXXXXXXAASWLLLSXXXXXXXXXXXXXXXXXXXXXEVDEYLDLVDYTGGN-QYLDQYSNGNNNQQQHGVAQKGYVGDSVVPVQCELANKDHHRHQQNFQMGLDYDSSKAGYSYNGXXXXXXXXXXTDLGVVPESTMSDISIS 744 TCR+AACTVYC+AD AYLCS+CD++VH ANR+A RHERV VC+SCE+APAAF EIHSANPLARRHQRVPILPIS Y T T AASWLL + DE+L+LVDY+ + Q+ DQ N Q V Q+ Y D VVP+Q E+ +K ++ QQNFQ+ ++ S A S NG DLGVVPEST SD ++S Sbjct: 14 TCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRVCQSCERAPAAFFCKADAASLCTTCDSEIHSANPLARRHQRVPILPISEYSYSSTATNHSCETTVTDPENRLVLGQEEEDEDEAEAASWLLPNSGKNSGNNNGFSIG---------DEFLNLVDYSSSDKQFTDQ---SNQYQLDCNVPQRSYGEDGVVPLQIEV-SKGMYQEQQNFQLSINCGSWGALRSSNGSLSHMVNVSSMDLGVVPESTTSDATVS 261
BLAST of CV884705 vs. ExPASy Swiss-Prot
Match: COL2_ARATH (Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana GN=COL2 PE=1 SV=1) HSP 1 Score: 174.481 bits (441), Expect = 5.455e-43 Identity = 111/251 (44.22%), Postives = 134/251 (53.39%), Query Frame = 1 Query: 4 TCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFXXXXXXXXXXXXXXXEIHSANPLARRHQRVPILPISGSVYGGRTGATPXXXXXXXXXXXXAASWLLLSXXXXXXXXXXXXXXXXXXXXXEVDEYLDLVDYTGG--NQYLDQYSNGNNNQQQHGVAQKGYVGDSVVPVQCELANKDHHRHQQNFQMGLDYD-SSKAGYSYNGXXXXXXXXXXT--DLGVVPESTMSDISI 741 TCR+AACTVYC+AD AYLC+ CD+RVH ANRVA RHERV VC+SCE APAAF EIHSANPLARRHQRVPILP+S + A ASWLL + EYLDLVDY+ NQ+ D NQ H Q+ + GD VVP+Q E + + QQNFQ+G++Y SS A Y+ N + D+ VVPEST SDI++ Sbjct: 18 TCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERVRVCQSCESAPAAFLCKADAASLCTACDAEIHSANPLARRHQRVPILPLSANSCSSM--APSETDADNDEDDREVASWLLPNPGKNIGNQNNGFLFGV--------EYLDLVDYSSSMDNQFED-------NQYTH--YQRSFGGDGVVPLQVEESTSHLQQSQQNFQLGINYGFSSGAHYNNNSLKDLNHSASVSSMDISVVPESTASDITV 249
BLAST of CV884705 vs. ExPASy Swiss-Prot
Match: CONS_ARATH (Zinc finger protein CONSTANS OS=Arabidopsis thaliana GN=CO PE=1 SV=1) HSP 1 Score: 167.162 bits (422), Expect = 8.710e-41 Identity = 105/259 (40.54%), Postives = 125/259 (48.26%), Query Frame = 1 Query: 4 TCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFXXXXXXXXXXXXXXXEIHSANPLARRHQRVPILPISGSVYGGRTG-----------------ATPXXXXXXXXXXXXAASWLLLSXXXXXXXXXXXXXXXXXXXXXEVDEYLDLVDYTGGNQY--LDQYSNGNNNQQQHGVAQKGYVGDSVVPVQCELANKDHHRHQQNFQMGLDYDSSKAGYSYNGXXXXXXXXXXTDLGVVPEST 723 TCR+ ACTVYC AD AYLC +CD++VH ANRVA RH+RV VCESCE+APAAF E+HSANPLARRHQRVPILPISG+ + T ASWL + DEYL+LVDY Y +YS +QQ V Q Y GD VVP++ E + +QQNFQ + Y SS Y+ NG + GVVPEST Sbjct: 22 TCRSNACTVYCHADSAYLCMSCDAQVHSANRVASRHKRVRVCESCERAPAAFLCEADDASLCTACDSEVHSANPLARRHQRVPILPISGNSFSSMTTTHHQSEKTMTDPEKRLVVDQEEGEEGDKDAKEVASWLFPNSDKNNNNQNNGLLFS--------DEYLNLVDYNSSMDYKFTGEYS---QHQQNCSVPQTSYGGDRVVPLKLEESRGHQCHNQQNFQFNIKYGSSGTHYNDNGSINHNAYISSMETGVVPEST 269
BLAST of CV884705 vs. ExPASy Swiss-Prot
Match: COL3_ARATH (Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana GN=COL3 PE=1 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 4.065e-22 Identity = 51/118 (43.22%), Postives = 69/118 (58.47%), Query Frame = 1 Query: 4 TCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFXXXXXXXXXXXXXXXEIHSANPLARRHQRVPILPISGSVYGGRTGATPXXXXXXXXXXXXAASWLL 357 +C++ A T++C+AD A+LC CD ++H AN++A RHERV++CE CEQAPA +IHSANPL+RRH+RVPI P +V G A+ ASWLL Sbjct: 10 SCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWLCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLSRRHERVPITPFYDAV-GPAKSASSSVNFVDEDGGDVTASWLL 126
BLAST of CV884705 vs. ExPASy Swiss-Prot
Match: COL4_ARATH (Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2) HSP 1 Score: 102.449 bits (254), Expect = 2.635e-21 Identity = 81/269 (30.11%), Postives = 117/269 (43.49%), Query Frame = 1 Query: 4 TCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFXXXXXXXXXXXXXXXEIHSANPLARRHQRVPILPISGSVYG-GRTGATP------------XXXXXXXXXXXXAASWLLLSXXXXXXXXXXXXXXXXXXXXXEVDEYLDLVDYTGGNQYL----DQYSN---GNNNQQQHGVAQKGYVGDSVVPVQCELANKDHHRHQQNFQMGLDYDSSKAGYSYNGXXXXXXXXXXT---DLGVVPE-STMSDIS 738 +C++A +YC+ D A+LC +CDS+VH AN++A RH RV++CE CEQAPA +IHSANPLARRH+RVP+ P SV G T AASWLLL D + G QYL D Y + GN + + + Q D VVPV+ + ++ F+M D+ G++Y G + ++GVVP+ +++D+S Sbjct: 8 SCKSATAALYCRPDAAFLCLSCDSKVHAANKLASRHARVWMCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVSSDGSVKHTAVNFLDDCYFSDIDGNGSREEEEEEAASWLLLPNPKTTTTATAGIVAVTSAEEVPGDS----PEMNTGQQYLFSDPDPYLDLDYGNVDPKVESLEQNSSGTDGVVPVENRTV-RIPTVNENCFEM--DFTGGSKGFTYGGGYNCISHSVSSSSMEVGVVPDGGSVADVS 269
BLAST of CV884705 vs. ExPASy Swiss-Prot
Match: COL5_ARATH (Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana GN=COL5 PE=2 SV=2) HSP 1 Score: 86.2705 bits (212), Expect = 1.954e-16 Identity = 40/83 (48.19%), Postives = 51/83 (61.45%), Query Frame = 1 Query: 7 CRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFXXXXXXXXXXXXXXXEIHSANPLARRHQRVPI 255 C++ V+C+ D A+LC ACD+R+H RHERV+VCE CEQAPAA +IHSANPLA RH+RVP+ Sbjct: 25 CKSVTAAVFCRVDSAFLCIACDTRIHSFT----RHERVWVCEVCEQAPAAVTCKADAAALCVSCDADIHSANPLASRHERVPV 103 The following BLAST results are available for this feature:
BLAST of CV884705 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CV884705 ID=CV884705; Name=CV884705; organism=Citrus sinensis; type=EST; length=745bpback to top |