CV884705

Overview
NameCV884705
Unique NameCV884705
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length745
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13243 contig Csv1_Contig13243:163..907. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884705 vs. ExPASy Swiss-Prot
Match: COL1_ARATH (Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana GN=COL1 PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.099e-43
Identity = 114/261 (43.68%), Postives = 139/261 (53.26%), Query Frame = 1
Query:    4 TCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFXXXXXXXXXXXXXXXEIHSANPLARRHQRVPILPISGSVYGG-------RTGATP------XXXXXXXXXXXXAASWLLLSXXXXXXXXXXXXXXXXXXXXXEVDEYLDLVDYTGGN-QYLDQYSNGNNNQQQHGVAQKGYVGDSVVPVQCELANKDHHRHQQNFQMGLDYDSSKAGYSYNGXXXXXXXXXXTDLGVVPESTMSDISIS 744
            TCR+AACTVYC+AD AYLCS+CD++VH ANR+A RHERV VC+SCE+APAAF               EIHSANPLARRHQRVPILPIS   Y          T  T                   AASWLL +                       DE+L+LVDY+  + Q+ DQ    N  Q    V Q+ Y  D VVP+Q E+ +K  ++ QQNFQ+ ++  S  A  S NG           DLGVVPEST SD ++S
Sbjct:   14 TCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRVCQSCERAPAAFFCKADAASLCTTCDSEIHSANPLARRHQRVPILPISEYSYSSTATNHSCETTVTDPENRLVLGQEEEDEDEAEAASWLLPNSGKNSGNNNGFSIG---------DEFLNLVDYSSSDKQFTDQ---SNQYQLDCNVPQRSYGEDGVVPLQIEV-SKGMYQEQQNFQLSINCGSWGALRSSNGSLSHMVNVSSMDLGVVPESTTSDATVS 261          
BLAST of CV884705 vs. ExPASy Swiss-Prot
Match: COL2_ARATH (Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana GN=COL2 PE=1 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.455e-43
Identity = 111/251 (44.22%), Postives = 134/251 (53.39%), Query Frame = 1
Query:    4 TCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFXXXXXXXXXXXXXXXEIHSANPLARRHQRVPILPISGSVYGGRTGATPXXXXXXXXXXXXAASWLLLSXXXXXXXXXXXXXXXXXXXXXEVDEYLDLVDYTGG--NQYLDQYSNGNNNQQQHGVAQKGYVGDSVVPVQCELANKDHHRHQQNFQMGLDYD-SSKAGYSYNGXXXXXXXXXXT--DLGVVPESTMSDISI 741
            TCR+AACTVYC+AD AYLC+ CD+RVH ANRVA RHERV VC+SCE APAAF               EIHSANPLARRHQRVPILP+S +       A               ASWLL +                        EYLDLVDY+    NQ+ D       NQ  H   Q+ + GD VVP+Q E +     + QQNFQ+G++Y  SS A Y+ N           +  D+ VVPEST SDI++
Sbjct:   18 TCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERVRVCQSCESAPAAFLCKADAASLCTACDAEIHSANPLARRHQRVPILPLSANSCSSM--APSETDADNDEDDREVASWLLPNPGKNIGNQNNGFLFGV--------EYLDLVDYSSSMDNQFED-------NQYTH--YQRSFGGDGVVPLQVEESTSHLQQSQQNFQLGINYGFSSGAHYNNNSLKDLNHSASVSSMDISVVPESTASDITV 249          
BLAST of CV884705 vs. ExPASy Swiss-Prot
Match: CONS_ARATH (Zinc finger protein CONSTANS OS=Arabidopsis thaliana GN=CO PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 8.710e-41
Identity = 105/259 (40.54%), Postives = 125/259 (48.26%), Query Frame = 1
Query:    4 TCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFXXXXXXXXXXXXXXXEIHSANPLARRHQRVPILPISGSVYGGRTG-----------------ATPXXXXXXXXXXXXAASWLLLSXXXXXXXXXXXXXXXXXXXXXEVDEYLDLVDYTGGNQY--LDQYSNGNNNQQQHGVAQKGYVGDSVVPVQCELANKDHHRHQQNFQMGLDYDSSKAGYSYNGXXXXXXXXXXTDLGVVPEST 723
            TCR+ ACTVYC AD AYLC +CD++VH ANRVA RH+RV VCESCE+APAAF               E+HSANPLARRHQRVPILPISG+ +   T                                  ASWL  +                       DEYL+LVDY     Y    +YS    +QQ   V Q  Y GD VVP++ E +      +QQNFQ  + Y SS   Y+ NG           + GVVPEST
Sbjct:   22 TCRSNACTVYCHADSAYLCMSCDAQVHSANRVASRHKRVRVCESCERAPAAFLCEADDASLCTACDSEVHSANPLARRHQRVPILPISGNSFSSMTTTHHQSEKTMTDPEKRLVVDQEEGEEGDKDAKEVASWLFPNSDKNNNNQNNGLLFS--------DEYLNLVDYNSSMDYKFTGEYS---QHQQNCSVPQTSYGGDRVVPLKLEESRGHQCHNQQNFQFNIKYGSSGTHYNDNGSINHNAYISSMETGVVPEST 269          
BLAST of CV884705 vs. ExPASy Swiss-Prot
Match: COL3_ARATH (Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana GN=COL3 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.065e-22
Identity = 51/118 (43.22%), Postives = 69/118 (58.47%), Query Frame = 1
Query:    4 TCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFXXXXXXXXXXXXXXXEIHSANPLARRHQRVPILPISGSVYGGRTGATPXXXXXXXXXXXXAASWLL 357
            +C++ A T++C+AD A+LC  CD ++H AN++A RHERV++CE CEQAPA                 +IHSANPL+RRH+RVPI P   +V G    A+              ASWLL
Sbjct:   10 SCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWLCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLSRRHERVPITPFYDAV-GPAKSASSSVNFVDEDGGDVTASWLL 126          
BLAST of CV884705 vs. ExPASy Swiss-Prot
Match: COL4_ARATH (Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.635e-21
Identity = 81/269 (30.11%), Postives = 117/269 (43.49%), Query Frame = 1
Query:    4 TCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFXXXXXXXXXXXXXXXEIHSANPLARRHQRVPILPISGSVYG-GRTGATP------------XXXXXXXXXXXXAASWLLLSXXXXXXXXXXXXXXXXXXXXXEVDEYLDLVDYTGGNQYL----DQYSN---GNNNQQQHGVAQKGYVGDSVVPVQCELANKDHHRHQQNFQMGLDYDSSKAGYSYNGXXXXXXXXXXT---DLGVVPE-STMSDIS 738
            +C++A   +YC+ D A+LC +CDS+VH AN++A RH RV++CE CEQAPA                 +IHSANPLARRH+RVP+ P   SV   G    T                         AASWLLL                        D      +   G QYL    D Y +   GN + +   + Q     D VVPV+     +    ++  F+M  D+     G++Y G          +   ++GVVP+  +++D+S
Sbjct:    8 SCKSATAALYCRPDAAFLCLSCDSKVHAANKLASRHARVWMCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVSSDGSVKHTAVNFLDDCYFSDIDGNGSREEEEEEAASWLLLPNPKTTTTATAGIVAVTSAEEVPGDS----PEMNTGQQYLFSDPDPYLDLDYGNVDPKVESLEQNSSGTDGVVPVENRTV-RIPTVNENCFEM--DFTGGSKGFTYGGGYNCISHSVSSSSMEVGVVPDGGSVADVS 269          
BLAST of CV884705 vs. ExPASy Swiss-Prot
Match: COL5_ARATH (Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana GN=COL5 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.954e-16
Identity = 40/83 (48.19%), Postives = 51/83 (61.45%), Query Frame = 1
Query:    7 CRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFXXXXXXXXXXXXXXXEIHSANPLARRHQRVPI 255
            C++    V+C+ D A+LC ACD+R+H       RHERV+VCE CEQAPAA                +IHSANPLA RH+RVP+
Sbjct:   25 CKSVTAAVFCRVDSAFLCIACDTRIHSFT----RHERVWVCEVCEQAPAAVTCKADAAALCVSCDADIHSANPLASRHERVPV 103          
The following BLAST results are available for this feature:
BLAST of CV884705 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
COL1_ARATH1.099e-4343.68Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis... [more]
COL2_ARATH5.455e-4344.22Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis... [more]
CONS_ARATH8.710e-4140.54Zinc finger protein CONSTANS OS=Arabidopsis thalia... [more]
COL3_ARATH4.065e-2243.22Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis... [more]
COL4_ARATH2.635e-2130.11Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis... [more]
COL5_ARATH1.954e-1648.19Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010B01_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T3_B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884705 ID=CV884705; Name=CV884705; organism=Citrus sinensis; type=EST; length=745bp
CACACTTGCAGGGCAGCTGCATGCACGGTCTACTGCAAAGCTGATATGGC
GTATCTTTGCTCTGCATGCGACTCCAGAGTCCATGTGGCCAATCGTGTCG
CCTTTAGACATGAGCGCGTGTTCGTGTGCGAGTCCTGCGAACAAGCCCCG
GCTGCTTTCTTATGCAAGGCGGACGCGGCGTCGCTTTGTGCTGCATGTGA
CGCTGAGATTCACTCAGCAAACCCTCTCGCAAGGCGCCACCAGCGGGTCC
CTATTCTTCCGATATCTGGCTCGGTGTACGGGGGAAGGACCGGCGCGACG
CCGGAGGGAGATCATGAGGATGACCAGGACGAGGAAGAAGCGGCTTCGTG
GTTGCTGTTGAGTAATCCTGGGAAGAATTGCGGTAATGGTAATAATGGGA
ATAATAATGGGTTTCTGTTTGGTGGGGAAGTTGATGAGTACTTGGACCTT
GTGGATTATACTGGTGGGAATCAGTACCTTGATCAGTACAGTAATGGTAA
CAATAATCAGCAACAGCACGGTGTTGCTCAAAAGGGTTATGTGGGTGACA
GTGTTGTGCCTGTTCAGTGTGAATTAGCTAACAAAGATCATCATCGTCAT
CAGCAAAATTTTCAAATGGGATTGGACTATGATTCATCTAAAGCAGGATA
TAGCTACAACGGTTCAATTAGTCACAGTGTCTCGGTTTCATCTACCGATC
TCGGAGTGGTACCGGAATCAACCATGAGTGACATATCGATTTCAC
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