CV884702

Overview
NameCV884702
Unique NameCV884702
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10867 contig Csv1_Contig10867:1045..1902. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884702 vs. ExPASy Swiss-Prot
Match: NEP1_NEPGR (Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.064e-23
Identity = 65/168 (38.69%), Postives = 94/168 (55.95%), Query Frame = -2
Query:  334 LIRNKKVDTFYYVGLTGFSVGGQAVQIPPSLFEMDEA-GDGGIIVDCGTAITRLQTQAYNSLRDSFVRLAGNLKPTSGVAL-FDTCYDF-SGLRSVRVPTVSLHFGAGKALDLPAKNYLIPVDSAGTFCFAFAPTSSALSIIGNVQQQGTRVSFDLANNRVGFTPNKC 828
            LI++ ++ TFYY+ L G SVG   + I PS F ++   G GGII+D GT +T     AY S+R  F+    NL   +G +  FD C+   S   ++++PT  +HF  G  L+LP++NY I   S G  C A   +S  +SI GN+QQQ   V +D  N+ V F   +C
Sbjct:  270 LIQSSQIPTFYYITLNGLSVGSTRLPIDPSAFALNSNNGTGGIIIDSGTTLTYFVNNAYQSVRQEFISQI-NLPVVNGSSSGFDLCFQTPSDPSNLQIPTFVMHFDGGD-LELPSENYFIS-PSNGLICLAMGSSSQGMSIFGNIQQQNMLVVYDTGNSVVSFASAQC 434          
BLAST of CV884702 vs. ExPASy Swiss-Prot
Match: NEP2_NEPGR (Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.523e-21
Identity = 64/170 (37.65%), Postives = 97/170 (57.06%), Query Frame = -2
Query:  334 LIRNKKVDTFYYVGLTGFSVGGQAVQIPPSLFEMDEAGDGGIIVDCGTAITRLQTQAYNSLRDSF---VRLAGNLKPTSGVALFDTCYDF-SGLRSVRVPTVSLHFGAGKALDLPAKNYLIPVDSAGTFCFAFAPTSS-ALSIIGNVQQQGTRVSFDLANNRVGFTPNKC 828
            LI +    T+YY+ L G +VGG  + IP S F++ + G GG+I+D GT +T L   AYN++  +F   + L    + +SG++   TC+   S   +V+VP +S+ F  G  L+L  +N LI   + G  C A   +S   +SI GN+QQQ T+V +DL N  V F P +C
Sbjct:  271 LIHSSLNPTYYYITLQGITVGGDNLGIPSSTFQLQDDGTGGMIIDSGTTLTYLPQDAYNAVAQAFTDQINLPTVDESSSGLS---TCFQQPSDGSTVQVPEISMQFDGG-VLNLGEQNILIS-PAEGVICLAMGSSSQLGISIFGNIQQQETQVLYDLQNLAVSFVPTQC 435          
The following BLAST results are available for this feature:
BLAST of CV884702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NEP1_NEPGR2.064e-2338.69Aspartic proteinase nepenthesin-1 OS=Nepenthes gra... [more]
NEP2_NEPGR2.523e-2137.65Aspartic proteinase nepenthesin-2 OS=Nepenthes gra... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010A11_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T7_A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884702 ID=CV884702; Name=CV884702; organism=Citrus sinensis; type=EST; length=856bp
TTTTTTTTTTTTTTTTATAGACTACACTTGCCCTTCAGCTTAGATATAAT
TTACTATACATGCCACTCAACCGTGCGAGGACACGGATCTAATTTATGAT
TTGATTAATGACACGAACCACTCCAGCCAAAAGCTTGATGCAATTTATTG
AGGTGGATCCCACTTTCATCCACCACCAGTCAACAACGCTCCTTTAACGC
AACATCTTTCAGTTCATTCTCCTAACAATTAAACGGGTATAAAAGTTTCT
CCTAACAAATGGACAGCTAACAGTTCCCTTTTTCTACCAATTACCAGGGG
TAACAAGGTAATTATGGGTTCCGAAAATGCCTAACACTTATTGGGAGTGA
ACCCGACGCGATTGTTCGCCAAATCAAAACTGACACGTGTTCCCTGTTGC
TGCACGTTGCCAATAATTGACAGAGCCGACGACGTTGGAGCGAATGCGAA
ACAGAAAGTCCCAGCTGAGTCTACTGGAATCAAGTAATTTTTGGCGGGTA
AATCAAGAGCTTTTCCAGCACCGAAGTGAAGCGACACCGTTGGGACCCTA
ACACTCCTTAATCCGGAGAAATCGTAGCACGTGTCGAATAAAGCGACCCC
GCTGGTGGGTTTCAAGTTACCCGCCAGCCTGACGAAAGAGTCGCGGAGGG
AGTTGTAGGCCTGAGTCTGCAGGCGAGTTATGGCGGTTCCACAATCAACA
ATAATCCCGCCGTCGCCTGCTTCGTCCATTTCAAAAAGCGATGGTGGGAT
TTGGACTGCCTGACCACCGACGCTGAATCCAGTGAGCCCCACGTAATAGA
ACGTGTCAACTTTTTTGTTCCTAATCAACGGAGCCGTGACCGCGTCACCG
CCTCGT
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