EY665310

Overview
NameEY665310
Unique NameEY665310
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1011
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665310_ssr965 microsatellite EY665310_ssr965:965..976. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY665310 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 3.111e-48
Identity = 108/170 (63.53%), Postives = 121/170 (71.18%), Query Frame = 1
Query:   73 ETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKARPHSARNCPGLGFQPV*SPRREHSNTGANLTPFSSGKWHSGEFPKTRKFKNGANPESMGQ 582
            E ARQI+G+R +QS T   RK SFVVRAASTPPVKQGA+R LWFASKQSLSYLDG LPGD+GFDPLGLSDPEGTGGFIEPKWLAYGEVINGR+AMLGA GAIAPEILGKA               V  P   ++    N T F       G F + R+F++ A P SMG+
Sbjct:   17 EAARQIIGSRISQSVT---RKASFVVRAASTPPVKQGANRQLWFASKQSLSYLDGRLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMG-FAEHRRFQDWAKPGSMGK 182          
BLAST of EY665310 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 8.471e-46
Identity = 114/203 (56.16%), Postives = 126/203 (62.07%), Query Frame = 1
Query:   73 ETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGA-DRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKARPHSARNCPGLGFQPV*SPRREHSNTGANLTPFSSGKWHSGEFPKTRKFKNGANPESMGQGILPRNSKKTWGRDSGKSGFTPGRNLFFTPSG 678
            E  RQ   ARS  S  G SRKG  +VRAA+TPPVKQG  DRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEP+WLAYGEVINGR+AMLGAVGAIAPE LGK                V  P   ++    N T F       G F + R+F++ A P SMG+       K   G  SG   +  G   FF P G
Sbjct:   17 EAVRQSFRARSLPSSVGCSRKG--LVRAAATPPVKQGGVDRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMG-FAEHRRFQDWAKPGSMGKQYFLGLEKGFGG--SGNPAYPGGP--FFNPLG 212          
BLAST of EY665310 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.723e-14
Identity = 49/110 (44.55%), Postives = 59/110 (53.64%), Query Frame = 1
Query:   88 ILGARSAQSPTGSS-RKGSFVV----RAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 399
            I+GA  A    G   R   F+     R+ +   V    DRPLWF       +LDGSLPGD+GFDPLGL SDPE        KW A  E+++ R+AMLGA G   PE L K
Sbjct:   26 IVGATKASFLGGKRLRVSKFIAPVGSRSVAVSAVAADPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESL------KWNAQAELVHSRWAMLGAAGIFIPEFLTK 129          
BLAST of EY665310 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 6.546e-14
Identity = 42/84 (50.00%), Postives = 52/84 (61.90%), Query Frame = 1
Query:  151 RAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 399
            R+A+T  V    DRPLWF       +LDGSLPGD+GFDPLGL SDPE        +W    E+++ R+AMLGA G   PE+L K
Sbjct:   52 RSATTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESL------RWNQQAELVHCRWAMLGAAGIFIPELLTK 129          
BLAST of EY665310 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.972e-11
Identity = 35/69 (50.72%), Postives = 44/69 (63.77%), Query Frame = 1
Query:  199 WFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKA 402
            W    QS +YLDGSL GD GFDPL L+ DPE      + +W    +V+NGR+AMLG  G + PE+L KA
Sbjct:   36 WLPGLQSPAYLDGSLEGDNGFDPLALAEDPE------DLRWFVQADVVNGRWAMLGVAGMLIPEVLTKA 98          
BLAST of EY665310 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.775e-11
Identity = 41/93 (44.09%), Postives = 49/93 (52.69%), Query Frame = 1
Query:  115 PTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEI 390
            P G S   SF V A      K+G     W     S  YL GSLPGD GFDPLGL+ DPE        +W    E++NGR+AMLG  G + PE+
Sbjct:   38 PVGCSPSASFKVEA------KKGE----WLPGLASPGYLTGSLPGDNGFDPLGLAEDPENL------RWFVQAELVNGRWAMLGVAGMLLPEV 114          
The following BLAST results are available for this feature:
BLAST of EY665310 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
CB13_SOLLC3.111e-4863.53Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA8.471e-4656.16Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB12_PETHY1.723e-1444.55Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB12_SOLLC6.546e-1450.00Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB120_HORVU3.972e-1150.72Chlorophyll a-b binding protein 1B-20, chloroplast... [more]
CB24_PEA6.775e-1144.09Chlorophyll a-b binding protein P4, chloroplastic ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-086-D11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665310 ID=EY665310; Name=EY665310; organism=Citrus sinensis; type=EST; length=1011bp
AACAAGAGGAAAAAAGAAAATTAAAAAATGGCAACCCAAGCTTTGGTTTC
ATCATCTCTTACATCTTCAGTGGAGACTGCGAGACAAATTCTTGGAGCAA
GATCAGCTCAATCCCCAACTGGGTCATCAAGAAAAGGTTCCTTTGTTGTT
AGGGCAGCTTCTACTCCTCCTGTTAAGCAAGGAGCAGACAGACCGTTGTG
GTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGCAGCCTCCCCGGAG
ACTATGGATTCGACCCACTTGGTCTCTCAGACCCTGAAGGCACAGGAGGG
TTCATTGAGCCAAAATGGCTGGCCTACGGCGAGGTCATCAACGGTCGTTA
TGCCATGTTGGGAGCTGTGGGAGCCATTGCACCGGAGATTCTTGGCAAGG
CAAGGCCTCATTCCGCAAGAAACTGCCCTGGCCTGGGTTTCCAACCGGTG
TGATCCCCCCGGCGGGAACATTCAAATACTGGGGCGAACCTTACCCCTTT
TTCGTCCGGGAAATGGCACTCAGGGGAATTTCCCAAGACCCGGAAATTCA
AAAATGGGGCAAATCCAGAATCAATGGGGCAGGGAATACTTCCTCGGAAT
TCAAAAAAAACTTGGGGAAGGGATTCCGGGAAATCCGGGTTTACCCCGGG
AAGAAACCTCTTTTTCACCCCTTCGGGGTCTTTGGGGAAAAAAAAAAAAA
ACAAAAGAAAGGAAATTCAAGCCCCAAGGAGAAGGAAAAAAAAGAAAAAA
TGGGCAAGGTTGGGGAACCTCGGGGGTATTATTTTGTTAAAGAGCCTTGG
TTAAGGAAGGGTGGGGGGCCTCTCCGAGAACACCATATGGAGATAAATTG
GGGGGAGGAACCATGAAAAACACAAGATGGTTTTTAGAAACAACCCCAAC
AAAATTTTTAACAGGAAAAAAAAAAAAAATTTTTGGTTTGTTGCTTGGAG
GGTGGCGGTGATATTTTATTTATTTACCTCCCTCCTGCTGGGTGCTCCCC
CCCCCACCCCC
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