EY665309

Overview
NameEY665309
Unique NameEY665309
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1003
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665309 vs. ExPASy Swiss-Prot
Match: SSG1_MANES (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Manihot esculenta GN=WAXY PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 1.516e-21
Identity = 45/105 (42.86%), Postives = 61/105 (58.10%), Query Frame = 3
Query:  126 MATAVAASSFVSRSYGHEVASGLNSKASQMKF-----RCMKHSGLRSLNIIDELQVKTMASKLATSRQAGRNGFRSQNGPSLMIVCGVGLNILFVGTEVAPWNKT 425
            MAT +AA  FVSRS  H     L +KA+ +       + +  +GLRSLN +D+LQ+KT  SK      A  NG      P+  I+CG G+N++FVG EV PW+KT
Sbjct:    1 MATVIAAH-FVSRS-SHLSIHALETKANNLSHTGPWTQTITPNGLRSLNTMDKLQMKTQ-SKAVKKVSATGNG-----RPAAKIICGHGMNLIFVGAEVGPWSKT 97          

HSP 2 Score: 57.3806 bits (137), Expect = 1.516e-21
Identity = 22/35 (62.86%), Postives = 31/35 (88.57%), Query Frame = 1
Query:  469 AAYGHRVMTIAPRYDRNKDAWETDVEIDLKVGDKI 573
            AA GHRVMT++PRYD+ KDAW+T V +++K+GD+I
Sbjct:  112 AARGHRVMTVSPRYDQYKDAWDTSVSVEIKIGDRI 146          
BLAST of EY665309 vs. ExPASy Swiss-Prot
Match: SSG1_SOLTU (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Solanum tuberosum GN=WAXY PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 5.647e-21
Identity = 42/102 (41.18%), Postives = 60/102 (58.82%), Query Frame = 3
Query:  126 MATAVAASSFVSRSYGHEVASGLNSKASQMKFR--CMKHSGLRSLNIIDELQVKTMASKLATSRQAGRNGFRSQNGPSLMIVCGVGLNILFVGTEVAPWNKT 425
            MA+  A+  FVSRS   + +    S  SQ+  R   + H+GLR++N +D LQ +T      T + A R   + + G S  IVCG G+N++FVGTEV PW+KT
Sbjct:    1 MASITASHHFVSRS---QTSLDTKSTLSQIGLRNHTLTHNGLRAVNKLDGLQSRTNTK--VTPKMASRTETK-RPGCSATIVCGKGMNLIFVGTEVGPWSKT 96          

HSP 2 Score: 56.6102 bits (135), Expect = 5.647e-21
Identity = 24/35 (68.57%), Postives = 30/35 (85.71%), Query Frame = 1
Query:  469 AAYGHRVMTIAPRYDRNKDAWETDVEIDLKVGDKI 573
            AA GHRVMTI+PRYD+ KDAW+T V +++KVGD I
Sbjct:  111 AARGHRVMTISPRYDQYKDAWDTSVAVEVKVGDSI 145          
BLAST of EY665309 vs. ExPASy Swiss-Prot
Match: SSG1_ARATH (Probable granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=WAXY PE=2 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 1.017e-19
Identity = 38/103 (36.89%), Postives = 62/103 (60.19%), Query Frame = 3
Query:  126 MATAVAASSFVSRS--YGHEVASGLNSKAS-QMKFRCMKHSGLRSLNIIDELQVKTMASKLATSRQAGRNGFRSQNGPSLMIVCGVGLNILFVGTEVAPWNKT 425
            MAT  A+S+FVSR+  + +  AS  +  A   +K + + H GLRS N++D LQ ++ A K  +++ + R+      G    IVC  G++++F+G EV PW+KT
Sbjct:    1 MATVTASSNFVSRTSLFNNHGASSCSDVAQITLKGQSLTHCGLRSFNMVDNLQRRSQA-KPVSAKSSKRSSKVKTAGK---IVCEKGMSVIFIGAEVGPWSKT 99          

HSP 2 Score: 55.8398 bits (133), Expect = 1.017e-19
Identity = 24/35 (68.57%), Postives = 29/35 (82.86%), Query Frame = 1
Query:  469 AAYGHRVMTIAPRYDRNKDAWETDVEIDLKVGDKI 573
            AA GHRVMTI PRYD+ KDAW+T V + +KVGDK+
Sbjct:  114 AARGHRVMTICPRYDQYKDAWDTCVVVQIKVGDKV 148          
BLAST of EY665309 vs. ExPASy Swiss-Prot
Match: SSG1_ANTMA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Antirrhinum majus GN=WAXY PE=2 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 1.407e-18
Identity = 38/103 (36.89%), Postives = 59/103 (57.28%), Query Frame = 3
Query:  126 MATAVAASSFVSRSYGHEVAS-GLNSKASQMKFRCMK--HSGLRSLNIIDELQVKTMASKLATSRQAGRNGFRSQNGPSLMIVCGVGLNILFVGTEVAPWNKT 425
            MAT V AS  VS  +G   +S    +  +Q+  R  +  H+GLRS+N++D+LQ++  A +  +  +   NG      P   I+CG G+N++FV  EV PW+KT
Sbjct:    1 MAT-VTASQLVSHVHGGATSSPDTKTNLAQVGLRNQQFTHNGLRSINMVDKLQMRNNAKQSRSLVKKTDNG-----SPLGKIICGTGMNLVFVLAEVGPWSKT 97          

HSP 2 Score: 55.4546 bits (132), Expect = 1.407e-18
Identity = 27/50 (54.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query:  424 LGDLVKFLEVCHQHWAAYGHRVMTIAPRYDRNKDAWETDVEIDLKVGDKI 573
            LGD+V  L       A  GHRVMT++PRYD+ KDAW+T V +++KVGD I
Sbjct:  100 LGDVVGGLPPA---MAGNGHRVMTVSPRYDQYKDAWDTSVVVEIKVGDSI 146          
BLAST of EY665309 vs. ExPASy Swiss-Prot
Match: SSG1_IPOBA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Ipomoea batatas GN=WAXY PE=2 SV=2)

HSP 1 Score: 54.6842 bits (130), Expect = 5.546e-17
Identity = 23/35 (65.71%), Postives = 30/35 (85.71%), Query Frame = 1
Query:  469 AAYGHRVMTIAPRYDRNKDAWETDVEIDLKVGDKI 573
            AA GHRVMT+ PRYD+ KDAW+T V ++L+VGD+I
Sbjct:  112 AARGHRVMTVCPRYDQYKDAWDTCVVVELQVGDRI 146          

HSP 2 Score: 54.299 bits (129), Expect = 5.546e-17
Identity = 40/104 (38.46%), Postives = 55/104 (52.88%), Query Frame = 3
Query:  126 MATAVAASSFVSRSYGHEVASGLNSKASQMKFR--CMKHSGLRSLNIIDELQVKTMASKLATSRQAGRNGFRSQNGPSL-MIVCGV-GLNILFVGTEVAPWNKT 425
            MAT + AS FVS   G   +        Q+  R   + H+GLR +N ID LQ++T A K        +NG  ++ G +   IVC   G+N++FVG EV PW KT
Sbjct:    1 MAT-ITASHFVSHVCGGATSGESKVGLGQLALRSQAVTHNGLRPVNKIDMLQLRTSAKK------PSKNGRENEGGMAAGTIVCKQQGMNLVFVGCEVGPWCKT 97          
BLAST of EY665309 vs. ExPASy Swiss-Prot
Match: SSG1_SORBI (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Sorghum bicolor GN=WAXY PE=2 SV=1)

HSP 1 Score: 49.6766 bits (117), Expect = 5.036e-14
Identity = 20/33 (60.61%), Postives = 27/33 (81.82%), Query Frame = 1
Query:  469 AAYGHRVMTIAPRYDRNKDAWETDVEIDLKVGD 567
            AA GHRVM ++PRYD+ KDAW+T V  ++K+GD
Sbjct:  112 AANGHRVMVVSPRYDQYKDAWDTSVVSEIKMGD 144          

HSP 2 Score: 49.2914 bits (116), Expect = 5.036e-14
Identity = 22/54 (40.74%), Postives = 32/54 (59.26%), Query Frame = 3
Query:  264 DELQVKTMASKLATSRQAGRNGFRSQNGPSLMIVCGVGLNILFVGTEVAPWNKT 425
            D L ++T A      + A R G R    PSL++    G+N++FVG E+APW+KT
Sbjct:   44 DALSMRTSACPAPRQQPAARRGGRGGRFPSLVVCATAGMNVVFVGAEMAPWSKT 97          
BLAST of EY665309 vs. ExPASy Swiss-Prot
Match: SSG1_MAIZE (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Zea mays GN=WAXY PE=3 SV=1)

HSP 1 Score: 49.6766 bits (117), Expect = 1.434e-13
Identity = 20/33 (60.61%), Postives = 27/33 (81.82%), Query Frame = 1
Query:  469 AAYGHRVMTIAPRYDRNKDAWETDVEIDLKVGD 567
            AA GHRVM ++PRYD+ KDAW+T V  ++K+GD
Sbjct:  107 AANGHRVMVVSPRYDQYKDAWDTSVVSEIKMGD 139          

HSP 2 Score: 47.7506 bits (112), Expect = 1.434e-13
Identity = 24/62 (38.71%), Postives = 35/62 (56.45%), Query Frame = 3
Query:  240 GLRSLNIIDELQVKTMASKLATSRQAGRNGFRSQNGPSLMIVCGVGLNILFVGTEVAPWNKT 425
            G R+    D L ++T A      +Q  R G R    PSL++    G+N++FVG E+APW+KT
Sbjct:   34 GARASAAADTLSMRTSARAAPRHQQQARRGGRF---PSLVVCASAGMNVVFVGAEMAPWSKT 92          
BLAST of EY665309 vs. ExPASy Swiss-Prot
Match: SSG1B_HORVU (Granule-bound starch synthase 1b, chloroplastic/amyloplastic (Fragment) OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 52.7582 bits (125), Expect = 5.574e-12
Identity = 27/49 (55.10%), Postives = 35/49 (71.43%), Query Frame = 1
Query:  424 LGDLVKFLEVCHQHWAAYGHRVMTIAPRYDRNKDAWETDVEIDLKVGDK 570
            LGD+V  L       AA GHRVMTIAPRYD+ KD W+T+V +++ VGD+
Sbjct:   56 LGDVVGGLPPA---LAAMGHRVMTIAPRYDQYKDTWDTNVLVEVIVGDR 101          

HSP 2 Score: 39.2762 bits (90), Expect = 5.574e-12
Identity = 21/47 (44.68%), Postives = 28/47 (59.57%), Query Frame = 3
Query:  285 MASKLATSRQAGRNGFRSQNGPSLMIVCGVGLNILFVGTEVAPWNKT 425
            +A + AT+ +  RN  R+    S  IVC  G+ I+FV TEV PW KT
Sbjct:   11 LAKRRATNYETHRNSSRT----SSPIVCSTGMPIIFVATEVHPWCKT 53          
BLAST of EY665309 vs. ExPASy Swiss-Prot
Match: SSG1_PEA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 1.580e-11
Identity = 23/35 (65.71%), Postives = 31/35 (88.57%), Query Frame = 1
Query:  469 AAYGHRVMTIAPRYDRNKDAWETDVEIDLKVGDKI 573
            A  GHRVMT++PRYD+ KDAW+T+V +++KVGDKI
Sbjct:  107 AGNGHRVMTVSPRYDQYKDAWDTNVLVEVKVGDKI 141          

HSP 2 Score: 34.2686 bits (77), Expect = 1.580e-11
Identity = 24/62 (38.71%), Postives = 35/62 (56.45%), Query Frame = 3
Query:  240 GLRSLNIIDELQVKTMASKLATSRQAGRNGFRSQNGPSLMIVCGVGLNILFVGTEVAPWNKT 425
            GLRSLN   +L V+T  +   +S  + ++  +        IVCG+ L  +FVG EV PW+KT
Sbjct:   44 GLRSLN---KLHVRTARATSGSSDTSEKSLGK--------IVCGMSL--VFVGAEVGPWSKT 92          
BLAST of EY665309 vs. ExPASy Swiss-Prot
Match: SSG1_ORYSJ (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=WAXY PE=1 SV=1)

HSP 1 Score: 50.0618 bits (118), Expect = 3.455e-11
Identity = 21/34 (61.76%), Postives = 27/34 (79.41%), Query Frame = 1
Query:  469 AAYGHRVMTIAPRYDRNKDAWETDVEIDLKVGDK 570
            AA GHRVM I+PRYD+ KDAW+T V  ++KV D+
Sbjct:  113 AANGHRVMVISPRYDQYKDAWDTSVVAEIKVADR 146          

HSP 2 Score: 39.2762 bits (90), Expect = 3.455e-11
Identity = 20/55 (36.36%), Postives = 31/55 (56.36%), Query Frame = 3
Query:  264 DELQVKTMASKLATSRQAGRNGFRSQNGPSLMIVC-GVGLNILFVGTEVAPWNKT 425
            D   +    S  AT +Q       S+  PS+++   G G+N++FVG E+APW+KT
Sbjct:   44 DATSLSVTTSARATPKQQRSVQRGSRRFPSVVVYATGAGMNVVFVGAEMAPWSKT 98          
The following BLAST results are available for this feature:
BLAST of EY665309 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
SSG1_MANES1.516e-2142.86Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_SOLTU5.647e-2141.18Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ARATH1.017e-1936.89Probable granule-bound starch synthase 1, chloropl... [more]
SSG1_ANTMA1.407e-1836.89Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_IPOBA5.546e-1765.71Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_SORBI5.036e-1460.61Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_MAIZE1.434e-1360.61Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1B_HORVU5.574e-1255.10Granule-bound starch synthase 1b, chloroplastic/am... [more]
SSG1_PEA1.580e-1165.71Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ORYSJ3.455e-1161.76Granule-bound starch synthase 1, chloroplastic/amy... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-086-D10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665309 ID=EY665309; Name=EY665309; organism=Citrus sinensis; type=EST; length=1003bp
CAAAGAGCGAAGTCAGCTGATGTTCGCTTCACGTTCATTCATAGACGCTT
GAGCACCAGATTTCATCAGGAAACTAAGAGGGAAACAAATCTTCAGCAGA
GACTACAAACATAATAATATCAGCTATGGCTACCGCTGTAGCCGCTTCAA
GCTTCGTCTCAAGGAGTTATGGACATGAGGTAGCTTCAGGATTGAATAGT
AAGGCATCACAGATGAAATTTAGGTGTATGAAGCACAGTGGGCTGAGAAG
TTTAAATATCATAGACGAACTCCAAGTGAAAACAATGGCATCAAAACTAG
CCACCAGCAGGCAAGCTGGGAGGAATGGATTTAGAAGCCAGAACGGGCCA
TCCTTAATGATTGTTTGTGGGGTTGGCCTGAATATCCTCTTTGTTGGAAC
AGAGGTTGCTCCTTGGAATAAAACTGGGGGACTTGGTGAAGTTCTTGGAG
GTCTGCCACCAGCACTGGGCGGCCTATGGGCACCGTGTCATGACAATTGC
CCCCCGATATGACCGGAACAAAGATGCTTGGGAAACGGATGTTGAAATTG
ACCTGAAGGTTGGAGACAAAATTTGAAAAATTCCGCTTCTTTCCTTGGCA
CAAAAAAAGGATTTGATCGGGGGGTTGGGGGAATCTTCCTTGGGTTCCTT
GCAAAGGGGGGGGGGAAAAACCCCAATCCCAAATTTTGGGGGGCCTAGGA
AGGGGAAGGGGAAATACCGGGGAAAACCAACCTTCCCTTTCCCCTTTGTT
GGGGGCCCCCCTCTTGGAACCCCCAGAAAAATTTCGAAAAATTTTAAACC
ACAAAAAAAAAATTTTTCCTTCGGGGGACCATTGGGGGGGGGAAAAAATG
GGGTTTTTTTTTGTGTTGGCTAAGGGGGGGGGGGGGAAAAATTCCCCCCT
TTTACCCCCCCCTGTGTGTATTCCGGAAAAAAAAAAATATTGGTGATAAA
AAAGACCCCCCCACAGGGAGAGGGGAGGGTGGGGAAACCAATAAATGAAG
GTG
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