EY665307

Overview
NameEY665307
Unique NameEY665307
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1012
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665307 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.762e-12
Identity = 34/41 (82.93%), Postives = 38/41 (92.68%), Query Frame = 3
Query:    3 GNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 125
            GNM+VQEQENVKRVQLADKYLSEAALG+AN DA+ +G FYG
Sbjct:  397 GNMLVQEQENVKRVQLADKYLSEAALGDANSDAMNTGTFYG 437          
BLAST of EY665307 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 4.712e-12
Identity = 34/40 (85.00%), Postives = 39/40 (97.50%), Query Frame = 3
Query:    3 GNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFY 122
            GNM+VQEQENVKRVQLADKYL+EAALG ANEDAI+SG+F+
Sbjct:  399 GNMLVQEQENVKRVQLADKYLNEAALGNANEDAIKSGSFF 438          
BLAST of EY665307 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 8.003e-12
Identity = 30/36 (83.33%), Postives = 33/36 (91.67%), Query Frame = 1
Query:  262 GKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQY 369
            GK AQQ+N+PVPEGCTDP AENFDPTARSDDG+C Y
Sbjct:  437 GKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVY 472          
BLAST of EY665307 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 8.037e-12
Identity = 33/41 (80.49%), Postives = 40/41 (97.56%), Query Frame = 3
Query:    3 GNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 125
            G+M+VQEQENVKRVQLADKYLSEAALG+AN+DA+++G FYG
Sbjct:  384 GHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFYG 424          
BLAST of EY665307 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.371e-11
Identity = 33/41 (80.49%), Postives = 37/41 (90.24%), Query Frame = 3
Query:    3 GNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 125
            G M+VQEQENVKRVQLADKY+SEAALG+AN DAI+ G FYG
Sbjct:  397 GGMLVQEQENVKRVQLADKYMSEAALGDANNDAIKRGTFYG 437          
BLAST of EY665307 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.209e-11
Identity = 32/40 (80.00%), Postives = 37/40 (92.50%), Query Frame = 3
Query:    3 GNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFY 122
            GNM+VQEQENVKRVQLADKYL EAALG+AN DAI +G+F+
Sbjct:  401 GNMLVQEQENVKRVQLADKYLKEAALGDANADAINNGSFF 440          
BLAST of EY665307 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 8.886e-11
Identity = 31/41 (75.61%), Postives = 37/41 (90.24%), Query Frame = 3
Query:    3 GNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 125
            GNM+VQEQENVKRVQLAD+Y+S AALG+AN+DAI  G F+G
Sbjct:  395 GNMLVQEQENVKRVQLADQYMSSAALGDANKDAIDRGTFFG 435          
The following BLAST results are available for this feature:
BLAST of EY665307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
RCA_MALDO2.762e-1282.93Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU4.712e-1285.00Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARATH8.003e-1283.33Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU8.037e-1280.49Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_LARTR1.371e-1180.49Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_TOBAC5.209e-1180.00Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL8.886e-1175.61Ribulose bisphosphate carboxylase/oxygenase activa... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-086-D08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665307 ID=EY665307; Name=EY665307; organism=Citrus sinensis; type=EST; length=1012bp
ACGGAAACATGATTGTGCAAGAGCAAGAGAATGTGAAGAGAGTTCAGTTG
GCTGACAAGTATTTGAGTGAGGCCGCTCTTGGTGAAGCTAATGAAGATGC
TATTCAGAGTGGAAATTTCTATGGTTAGCCCCCTTGATCCTAGCTAAGAG
GCCTTGATGGGAGGTTTGCTACTAGCATTCTACCAAATTTAGAGCATAAA
TTGAGATCAAATGAAGAATAACAAAGCATTTTTTTTTTTGGGGGTAAATT
TTGCTGTTGCAGGCAAAGCAGCCCAGCAAATGAATGTTCCAGTTCCTGAA
GGATGTACTGATCCTACTGCAGAAAACTTTGATCCAACTGCAAGAAGTGA
TGATGGAAGCTGCCAATACACGCTTTAGGCCTTGTTTCTAAGGGTTGAGA
AGTGTCGCACTTTGCTTTAGATGTGAGATATTCAAATAATATTGTTGCAT
TTTCTTTTCTTTTTTAATCCAAAAGAAATCCTCTAATTTTTGTGTTAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAGGGCGGGCCGCCTCTAAAAGGAA
CCAAGCTTAATTAAGCCGGGCAGGGGACGCCATAACTCCTTTTCTTTAGG
GGCCCCCCTAAATTTTCAATTACCTGGGGCCGCCGTTTTTTTAAACCCTC
GGGGACTGGGAAAAACCCCGGGGGCGTTAACCCCAAATTTTATACCCCTT
TGGGAGCCATTTCCCCCCCTTTTTCCCCCAAGGGGGGGTAAAAAGCAAAA
AAAGGCCCCCCACCCTTATTCCCCCTTTCCCAAACGATTTGCACACCCTG
AAATTGGGTAAAAGGGGGAACACCCCCCCCGTGTTCCGCGCCCCTATATT
AAAGGCGCGAGGGGGGGGGTGGGGGGGGTTATAACCCCCAACACGGGGGA
TCGCCCTTATACATGTTTGGACGCGAGCGCCCCTTTTGACCGCGCCCCCC
CCTCTCTTTTTTGTTTTTTTTTTCTTATCCCTCCTTCCTCTTTTTTTTAT
CACCTGCCCGGA
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