CV884641

Overview
NameCV884641
Unique NameCV884641
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length622
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig297 contig Csv1_Contig297:44..665. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884641 vs. ExPASy Swiss-Prot
Match: CUTA_ARATH (Protein CutA, chloroplastic OS=Arabidopsis thaliana GN=CUTA PE=1 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.728e-51
Identity = 103/132 (78.03%), Postives = 118/132 (89.39%), Query Frame = -3
Query:  210 LPFFGSKFSNQARASSNTIKMEGNSKTVPSIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTRD 605
            +P   SKFS++A +SS  I+ME +SKTVPSIVVYVTVPN+EAGKKLA SIV+ KLAACVN VPGIESVYEW+G++Q+D+EELLIIKTRQSLLE LTEHV ANHEYDVPEVIALPITGGS  YLEWLK+STR+
Sbjct:   53 VPLLRSKFSSKAFSSS--IRMEESSKTVPSIVVYVTVPNREAGKKLANSIVQEKLAACVNIVPGIESVYEWEGKVQSDSEELLIIKTRQSLLEPLTEHVNANHEYDVPEVIALPITGGSDKYLEWLKNSTRN 182          
BLAST of CV884641 vs. ExPASy Swiss-Prot
Match: CUTA1_ORYSJ (Protein CutA 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CUTA1 PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 9.814e-47
Identity = 92/119 (77.31%), Postives = 105/119 (88.24%), Query Frame = -3
Query:  210 ASSNTIKMEGNSKTVPSIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTRD 566
            +SS + +ME  S TVPSIVVYVTVPNKEAGK+LA SI+  KLAACVN VPGIESVY W+G++QTDAEELLIIKTR+SLL+ LTEHVKANHEYDVPEVIALPI GG+  YLEWLK+STR+
Sbjct:   58 SSSASARMESTSTTVPSIVVYVTVPNKEAGKRLAGSIISEKLAACVNIVPGIESVYWWEGKVQTDAEELLIIKTRESLLDALTEHVKANHEYDVPEVIALPIKGGNLKYLEWLKNSTRE 176          
BLAST of CV884641 vs. ExPASy Swiss-Prot
Match: CUTA_HUMAN (Protein CutA OS=Homo sapiens GN=CUTA PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 2.352e-24
Identity = 52/111 (46.85%), Postives = 80/111 (72.07%), Query Frame = -3
Query:  216 EGNSKTVPSIV--VYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSST 542
            +  S  VP  V   +VT PN++  K++A ++V+ +LAACVN +P I S+YEWKG+I+ D+E L++IKT+ SL+  LT+ V++ H Y+V EVIALP+  G+ PYL+W++  T
Sbjct:   58 DSGSGYVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTDFVRSVHPYEVAEVIALPVEQGNFPYLQWVRQVT 168          
BLAST of CV884641 vs. ExPASy Swiss-Prot
Match: CUTA_RAT (Protein CutA OS=Rattus norvegicus GN=Cuta PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 4.012e-24
Identity = 49/97 (50.52%), Postives = 73/97 (75.26%), Query Frame = -3
Query:  216 YVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSST 506
            +VT PN++  K++A ++V+ +LAACVN +P I S+YEWKG+I+ D+E L++IKT+ SL+  LTE V++ H Y+V EVIALP+  G+ PYL W+   T
Sbjct:   70 FVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTEFVRSVHPYEVAEVIALPVEQGNPPYLHWVHQVT 166          
BLAST of CV884641 vs. ExPASy Swiss-Prot
Match: CUTA_MOUSE (Protein CutA OS=Mus musculus GN=Cuta PE=2 SV=3)

HSP 1 Score: 111.309 bits (277), Expect = 4.012e-24
Identity = 49/97 (50.52%), Postives = 73/97 (75.26%), Query Frame = -3
Query:  216 YVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSST 506
            +VT PN++  K++A ++V+ +LAACVN +P I S+YEWKG+I+ D+E L++IKT+ SL+  LTE V++ H Y+V EVIALP+  G+ PYL W+   T
Sbjct:   70 FVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTEFVRSVHPYEVAEVIALPVEQGNPPYLHWVHQVT 166          
BLAST of CV884641 vs. ExPASy Swiss-Prot
Match: CUTA_XENLA (Protein CutA homolog OS=Xenopus laevis GN=cuta PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 1.991e-23
Identity = 50/93 (53.76%), Postives = 68/93 (73.12%), Query Frame = -3
Query:  228 YVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWL 506
            YVT PN    K +A  +V+ KLAACVN +P I S+YEWKG+++ D E LL+IKTR S +  LTE+V++ H Y+V EVI+LPI  G+ PYL+W+
Sbjct:   53 YVTCPNDTVAKDIARGLVERKLAACVNVIPQITSIYEWKGKLEEDTEVLLMIKTRSSKVSALTEYVRSVHPYEVCEVISLPIEQGNPPYLKWV 145          
BLAST of CV884641 vs. ExPASy Swiss-Prot
Match: CUTA_THET8 (Divalent-cation tolerance protein cutA OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=cutA PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.601e-23
Identity = 48/99 (48.48%), Postives = 71/99 (71.72%), Query Frame = -3
Query:  216 VVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSST 512
            VV +TVP++E  + +A+++V+ +LAACVN VPG+ S+Y W+GE+  D E LL++KT       L E VKA H Y VPE++ALPI  G++ YL+WL+ +T
Sbjct:    4 VVLITVPSEEVARTIAKALVEERLAACVNIVPGLTSIYRWQGEVVEDQELLLLVKTTTHAFPKLKERVKALHPYTVPEIVALPIAEGNREYLDWLRENT 102          
BLAST of CV884641 vs. ExPASy Swiss-Prot
Match: CUTA_BOVIN (Protein CutA OS=Bos taurus GN=CUTA PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.567e-23
Identity = 52/108 (48.15%), Postives = 78/108 (72.22%), Query Frame = -3
Query:  216 SKTVPSIV--VYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSST 533
            S  VP  V   +VT PN++  K++A ++V+ +LA CVN VP I S+YEWKG+I+ D+E L++IKT+ SL+  LT+ V++ H Y+V EVIALP+  G+ PYL+W++  T
Sbjct:   59 SAYVPGSVSAAFVTCPNEKVAKEIARAVVEKRLA-CVNLVPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTDFVRSVHPYEVAEVIALPVEQGNSPYLQWVRQVT 165          
BLAST of CV884641 vs. ExPASy Swiss-Prot
Match: CUTA_ERWCT (Divalent-cation tolerance protein cutA OS=Erwinia carotovora subsp. atroseptica GN=cutA PE=3 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 5.075e-19
Identity = 39/102 (38.24%), Postives = 66/102 (64.71%), Query Frame = -3
Query:  213 SIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTR 518
            ++V+  T P+    ++LA S+++ +LAACV  +PG  S+Y W+G+++  +E  ++IK+  S  + L  H+K  H YD PE++ LP++GG   YL WL +S R
Sbjct:    9 AVVILCTAPDDACAQRLANSLLETRLAACVTLLPGARSLYYWEGKLEQQSEVQMLIKSDTSHQQALLTHLKQQHPYDTPELLVLPVSGGDSDYLTWLNASLR 110          
BLAST of CV884641 vs. ExPASy Swiss-Prot
Match: CUTA_SHISS (Divalent-cation tolerance protein cutA OS=Shigella sonnei (strain Ss046) GN=cutA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.297e-18
Identity = 41/111 (36.94%), Postives = 66/111 (59.46%), Query Frame = -3
Query:  213 MEGNSKTVPSIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTR 545
            ++  S    S+VV  T P++   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L E +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:    2 LDEKSSNTASVVVLCTAPDEATAQDLAAKVLAEKLAACATLIPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 112          
The following BLAST results are available for this feature:
BLAST of CV884641 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
CUTA_ARATH1.728e-5178.03Protein CutA, chloroplastic OS=Arabidopsis thalian... [more]
CUTA1_ORYSJ9.814e-4777.31Protein CutA 1, chloroplastic OS=Oryza sativa subs... [more]
CUTA_HUMAN2.352e-2446.85Protein CutA OS=Homo sapiens GN=CUTA PE=1 SV=2[more]
CUTA_RAT4.012e-2450.52Protein CutA OS=Rattus norvegicus GN=Cuta PE=1 SV=... [more]
CUTA_MOUSE4.012e-2450.52Protein CutA OS=Mus musculus GN=Cuta PE=2 SV=3[more]
CUTA_XENLA1.991e-2353.76Protein CutA homolog OS=Xenopus laevis GN=cuta PE=... [more]
CUTA_THET82.601e-2348.48Divalent-cation tolerance protein cutA OS=Thermus ... [more]
CUTA_BOVIN7.567e-2348.15Protein CutA OS=Bos taurus GN=CUTA PE=1 SV=1[more]
CUTA_ERWCT5.075e-1938.24Divalent-cation tolerance protein cutA OS=Erwinia ... [more]
CUTA_SHISS4.297e-1836.94Divalent-cation tolerance protein cutA OS=Shigella... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008F10_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T7_F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884641 ID=CV884641; Name=CV884641; organism=Citrus sinensis; type=EST; length=622bp
TGGTAGAATAGCATGTTTTCGGAAAACTAAGGGCATACATCATCTCACAA
GTTTTGCCAACATAGAATTCATCACGATATGTTCCAGTTCGATTATAAAA
TATACAAACTTTATTCTAGTAGTACCATCTGCACACTCAACCCAACAACA
AAAGGAGCTTATCAGTTACAGCGTCCACACACTACATCACACTACATCCG
CGGGAGTCAGTCCCTTGTACTGCTTTTTAGCCACTCTAGGTATGGCTGGC
TGCCACCAGTGATGGGCAAGGCAATTACTTCTGGCACATCATATTCATGA
TTTGCCTTGACATGCTCTGTCAGAGTTTCCAAAAGGGATTGCCTAGTCTT
TATAATAAGAAGTTCTTCAGCATCTGTCTGGATCTCTCCCTTCCACTCGT
AAACAGATTCAATACCTGGCACTCGATTCACACATGCTGCAAGTTTTGCT
TTCACTATGCTTTCAGCCAGTTTCTTTCCTGCTTCTTTGTTAGGAACGGT
GACATAAACTACAATACTTGGTACAGTTTTGCTGTTGCCTTCCATTTTGA
TCGTGTTACTACTCGCGCGAGCTTGGTTACTAAACTTTGATCCGAAAAAC
GGGAGAGAAGGAGCGGAACCCT
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