CV884638

Overview
NameCV884638
Unique NameCV884638
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length501
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884638_ssr20 microsatellite CV884638_ssr20:20..31. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CV884638 vs. ExPASy Swiss-Prot
Match: YJ2B_SCHPO (Uncharacterized bolA-like protein C4B3.11c OS=Schizosaccharomyces pombe GN=SPCC4B3.11c PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.172e-13
Identity = 32/67 (47.76%), Postives = 51/67 (76.12%), Query Frame = 2
Query:   74 KEKVESTLTSKLNPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEMKQIHALSI 274
            + +++  LT KL+PS L VID SGGCG+ +++ I S+ F+GK  LA+HRLVN+ L+EE++ +H L++
Sbjct:   33 ERRIKDILTEKLSPSSLRVIDVSGGCGSMYQVAIKSKAFQGKNTLAQHRLVNSILKEEIRNMHGLNL 99          
BLAST of CV884638 vs. ExPASy Swiss-Prot
Match: YETB_SCHPO (Uncharacterized bolA-like protein C8C9.11 OS=Schizosaccharomyces pombe GN=SPAC8C9.11 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.410e-13
Identity = 35/68 (51.47%), Postives = 47/68 (69.12%), Query Frame = 2
Query:   68 VTKEKVESTLTSKLNPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEMKQIHALS 271
            V  +++E  + + L P+H+E+ D SGGCG  FE+ IVS  FEGK  LARHRLVN  L+E +K IHA +
Sbjct:    2 VNAQQLELLIQNTLEPTHIEIQDMSGGCGQNFEVIIVSPLFEGKSTLARHRLVNHKLQEVIKDIHAFT 69          
BLAST of CV884638 vs. ExPASy Swiss-Prot
Match: BOLA2_HUMAN (BolA-like protein 2 OS=Homo sapiens GN=BOLA2 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.210e-12
Identity = 37/86 (43.02%), Postives = 53/86 (61.63%), Query Frame = 2
Query:   62 MGVTKEKVESTLTSKLNPSHLEVIDTS-GGCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEMKQIHALSIKKAMTPEQWKQQQE 316
            M ++ E +   L   L   H+EV DT+   C   F + +VS +FEGK LL RHRLVNA L EE+  IHA   +K +TP+QW ++++
Sbjct:    1 MELSAEYLREKLQRDLEAEHVEVEDTTLNRCSCSFRVLVVSAKFEGKPLLQRHRLVNACLAEELPHIHAFE-QKTLTPDQWARERQ 85          
BLAST of CV884638 vs. ExPASy Swiss-Prot
Match: BOLA2_MOUSE (BolA-like protein 2 OS=Mus musculus GN=Bola2 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.923e-12
Identity = 37/85 (43.53%), Postives = 51/85 (60.00%), Query Frame = 2
Query:   62 MGVTKEKVESTLTSKLNPSHLEVIDTS-GGCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEMKQIHALSIKKAMTPEQWKQQQ 313
            M ++ + +   L   L   H+EV DT+   C   F + +VS +FEGK LL RHRLVN  L EE+  IHA   +K +TPEQW +Q+
Sbjct:    1 MELSADYLREKLRQDLEAEHVEVEDTTLNRCATSFRVLVVSAKFEGKPLLQRHRLVNECLAEELPHIHAFE-QKTLTPEQWTRQR 84          
BLAST of CV884638 vs. ExPASy Swiss-Prot
Match: YGX0_YEAST (Uncharacterized bolA-like protein YGL220W OS=Saccharomyces cerevisiae GN=YGL220W PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.168e-11
Identity = 37/96 (38.54%), Postives = 58/96 (60.42%), Query Frame = 2
Query:   20 KERKQARVWELRVKMGVTKEKVESTLTSKLNPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEMKQIHALSIKKAMTPEQWKQ 307
            +E K+ R +++ V     +E++ES +       H+ V D S GCG  F+I +VS+ F+GK  L R R VN A++EE+++IHA S  K  T E+W +
Sbjct:   26 RETKRQRHYKMPVTEQGLRERIESAIPQVY---HIIVTDLSYGCGQSFDIVVVSDFFQGKSKLMRSRAVNKAVKEELQEIHAFSC-KCYTEEEWSK 117          
The following BLAST results are available for this feature:
BLAST of CV884638 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
YJ2B_SCHPO1.172e-1347.76Uncharacterized bolA-like protein C4B3.11c OS=Schi... [more]
YETB_SCHPO3.410e-1351.47Uncharacterized bolA-like protein C8C9.11 OS=Schiz... [more]
BOLA2_HUMAN2.210e-1243.02BolA-like protein 2 OS=Homo sapiens GN=BOLA2 PE=1 ... [more]
BOLA2_MOUSE4.923e-1243.53BolA-like protein 2 OS=Mus musculus GN=Bola2 PE=1 ... [more]
YGX0_YEAST4.168e-1138.54Uncharacterized bolA-like protein YGL220W OS=Sacch... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008F09_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T3_F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884638 ID=CV884638; Name=CV884638; organism=Citrus sinensis; type=EST; length=501bp
GACGGTTAGAAGAGGCCAAAAAGAAAGAAAGCAAGCAAGAGTTTGGGAAT
TGAGAGTTAAAATGGGCGTCACAAAAGAAAAAGTTGAATCTACTTTGACT
TCAAAACTCAACCCTTCTCATCTTGAAGTGATTGATACATCTGGTGGATG
CGGTGCGAAATTTGAAATTGAGATTGTATCAGAACAATTCGAAGGCAAGA
GGCTGCTGGCGAGGCACCGGCTAGTAAATGCTGCCCTGGAAGAGGAGATG
AAGCAAATCCATGCTCTCTCTATAAAGAAAGCTATGACCCCGGAGCAGTG
GAAACAACAACAAGAGTCTAATGCTGCTGCTTAAAAACATGCTCTTCAAT
ATTACAGTCATCGCTTCAAGCTGAATGTGACTAAACTATAAACATAAAAT
GCATTTGGGAATAAATTTAGCACTTCTTGTAACTTGGATCAATTTACTTA
GTTATTACTGAATGTTCAAACTCTTTTAAGATTAACAATTTAGGCAAAAA
A
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