CV884633

Overview
NameCV884633
Unique NameCV884633
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length158
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig925 contig Csv1_Contig925:40..196. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CV884633 vs. ExPASy Swiss-Prot
Match: UBIQ_WHEAT (Ubiquitin OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.637e-15
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = -3 
Query:   10 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 126
            KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct:    6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44
[Close]
BLAST of CV884633 vs. ExPASy Swiss-Prot
Match: UBIQ_SOYBN (Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.637e-15
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = -3 
Query:   10 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 126
            KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct:    6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44
[Close]
BLAST of CV884633 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLTU (Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.637e-15
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = -3 
Query:   10 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 126
            KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct:    6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44
[Close]
BLAST of CV884633 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLLC (Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.637e-15
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = -3 
Query:   10 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 126
            KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct:    6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44
[Close]
BLAST of CV884633 vs. ExPASy Swiss-Prot
Match: UBIQ_PETCR (Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.637e-15
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = -3 
Query:   10 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 126
            KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct:    6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44
[Close]
BLAST of CV884633 vs. ExPASy Swiss-Prot
Match: UBIQ_PEA (Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.637e-15
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = -3 
Query:   10 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 126
            KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct:    6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44
[Close]
BLAST of CV884633 vs. ExPASy Swiss-Prot
Match: UBIQ_ORYSJ (Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.637e-15
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = -3 
Query:   10 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 126
            KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct:    6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44
[Close]
BLAST of CV884633 vs. ExPASy Swiss-Prot
Match: UBIQ_NICSY (Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.637e-15
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = -3 
Query:   10 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 126
            KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct:    6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44
[Close]
BLAST of CV884633 vs. ExPASy Swiss-Prot
Match: UBIQ_MAIZE (Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.637e-15
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = -3 
Query:   10 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 126
            KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct:    6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44
[Close]
BLAST of CV884633 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPPO (Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.637e-15
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = -3 
Query:   10 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 126
            KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct:    6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44
The following BLAST results are available for this feature:
BLAST of CV884633 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
UBIQ_WHEAT8.637e-15100.00Ubiquitin OS=Triticum aestivum PE=3 SV=1[more]
UBIQ_SOYBN8.637e-15100.00Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1[more]
UBIQ_SOLTU8.637e-15100.00Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1[more]
UBIQ_SOLLC8.637e-15100.00Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=... [more]
UBIQ_PETCR8.637e-15100.00Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3... [more]
UBIQ_PEA8.637e-15100.00Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1[more]
UBIQ_ORYSJ8.637e-15100.00Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 ... [more]
UBIQ_NICSY8.637e-15100.00Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE... [more]
UBIQ_MAIZE8.637e-15100.00Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1[more]
UBIQ_LUPPO8.637e-15100.00Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008F05_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T7_F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884633 ID=CV884633; Name=CV884633; organism=Citrus sinensis; type=EST; length=158bp
TGCCAGCAAGATGAGCCTTTGCTGGTCTGGTGGGATCCCTTCCTTATCCT
GGATCTTGGCTTTTACATTATCAATGGTGTCAGAGCTTTCGACCTCAAGG
GTTATGGTCTTGCCGGTGAGAGTCTTGAAAGGCTTGAAAGCAAAGTGAAC
AAGATCCT
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