CV884628

Overview
NameCV884628
Unique NameCV884628
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length801
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1476 contig Csv1_Contig1476:217..1017. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884628 vs. ExPASy Swiss-Prot
Match: E13L3_ARATH (Glucan endo-1,3-beta-glucosidase-like protein 3 OS=Arabidopsis thaliana GN=At5g08000 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.581e-30
Identity = 55/81 (67.90%), Postives = 66/81 (81.48%), Query Frame = 1
Query:    7 CVCKDGVGDPVLQKALDYACGAGADCNPIHSNGPCYNPNTVKAHCSYAVNSYFQRKGQAQGSCDFSGSATVATTDPSTAGC 249
            CVCK G+ D VLQK LDYACG GADCNP H  G C+NP+ V+AHC+YAVNS+FQ+KGQA  SC+F+G+AT+ TTDPS  GC
Sbjct:   22 CVCKTGLSDSVLQKTLDYACGNGADCNPTHPKGSCFNPDNVRAHCNYAVNSFFQKKGQASESCNFTGTATLTTTDPSYTGC 102          
BLAST of CV884628 vs. ExPASy Swiss-Prot
Match: E13L2_ARATH (Glucan endo-1,3-beta-glucosidase-like protein 2 OS=Arabidopsis thaliana GN=At5g61130 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.241e-26
Identity = 49/81 (60.49%), Postives = 61/81 (75.31%), Query Frame = 1
Query:    7 CVCKDGVGDPVLQKALDYACGAGADCNPIHSNGPCYNPNTVKAHCSYAVNSYFQRKGQAQGSCDFSGSATVATTDPSTAGC 249
            CVCK G+ D VLQ  LDYACG GADCNP      C+NP+ V++HC+YAVNS+FQ+KGQ+ GSC+F G+AT   +DPS  GC
Sbjct:   22 CVCKTGLSDTVLQATLDYACGNGADCNPTKPKQSCFNPDNVRSHCNYAVNSFFQKKGQSPGSCNFDGTATPTNSDPSYTGC 102          
BLAST of CV884628 vs. ExPASy Swiss-Prot
Match: E13L4_ARATH (Glucan endo-1,3-beta-glucosidase-like protein At1g69295 OS=Arabidopsis thaliana GN=At1g69295 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.208e-22
Identity = 47/79 (59.49%), Postives = 59/79 (74.68%), Query Frame = 1
Query:    7 CVCKDGVGDPVLQKALDYACGAGADCNPIHSNGPCYNPNTVKAHCSYAVNSYFQRKGQAQGSCDFSGSATVATTDPSTA 243
            C+CK+G  + VLQKA+DYACG GADC  I   G CY PNTVK HC  AVNSY+Q+K  +  +CDF+G+A+ +TT PSTA
Sbjct:   22 CLCKEG-NEQVLQKAIDYACGNGADCTQIQPTGACYQPNTVKNHCDVAVNSYYQKKASSGATCDFNGAASPSTTPPSTA 99          
BLAST of CV884628 vs. ExPASy Swiss-Prot
Match: E131_ARATH (Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana GN=At1g11820 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.250e-19
Identity = 43/82 (52.44%), Postives = 54/82 (65.85%), Query Frame = 1
Query:    7 CVCKDGVGDPVLQKALDYACGAG-ADCNPIHSNGPCYNPNTVKAHCSYAVNSYFQRKGQAQGSCDFSGSATVATTDPSTAGC 249
            C+  DGV    LQ ALD+ACG G ++C+ I     CY PN VK H S+A NSY+Q++G+A GSCDF G A + TTDPS   C
Sbjct:  273 CIAMDGVDAKTLQAALDWACGPGRSNCSEIQPGESCYQPNNVKGHASFAFNSYYQKEGRASGSCDFKGVAMITTTDPSHGSC 354          
BLAST of CV884628 vs. ExPASy Swiss-Prot
Match: E133_ARATH (Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis thaliana GN=At2g01630 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 3.080e-18
Identity = 42/82 (51.22%), Postives = 54/82 (65.85%), Query Frame = 1
Query:    7 CVCKDGVGDPVLQKALDYACGAG-ADCNPIHSNGPCYNPNTVKAHCSYAVNSYFQRKGQAQGSCDFSGSATVATTDPSTAGC 249
            C+ K+ V   +LQ ALD+ACG G  DC+ +     CY P+ V AH +YA N+Y+Q+ G+A GSCDF G ATV TTDPS   C
Sbjct:  361 CIAKEKVDRKMLQAALDWACGPGKVDCSALMQGESCYEPDDVVAHSTYAFNAYYQKMGKASGSCDFKGVATVTTTDPSRGTC 442          
BLAST of CV884628 vs. ExPASy Swiss-Prot
Match: E13B_WHEAT (Glucan endo-1,3-beta-glucosidase OS=Triticum aestivum GN=GLC1 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.528e-17
Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = 1
Query:    7 CVCKDGVGDPVLQKALDYACGAGADCNPIHSNGPCYNPNTVKAHCSYAVNSYFQRKGQAQGSCDFSGSATVATTDPSTAGC 249
            CV KDG     LQ  ++YACG   DC PI S G C++PN+++AH SY +N+Y+Q  G    +CDF G+  V ++DPS  GC
Sbjct:  378 CVAKDGANGTDLQNNINYACGF-VDCKPIQSGGACFSPNSLQAHASYVMNAYYQANGHTDLACDFKGTGIVTSSDPSYGGC 457          
BLAST of CV884628 vs. ExPASy Swiss-Prot
Match: E137_ARATH (Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis thaliana GN=At4g34480 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.868e-15
Identity = 37/81 (45.68%), Postives = 49/81 (60.49%), Query Frame = 1
Query:    7 CVCKDGVGDPVLQKALDYACGAGADCNPIHSNGPCYNPNTVKAHCSYAVNSYFQRKGQAQGSCDFSGSATVATTDPSTAGC 249
            CV K G  +  LQ +LD+ACG G DC  I   G C+ PN V +H +YA+N YFQ+  +    CDFS +ATV + +PS   C
Sbjct:  365 CVPKKGATNEELQASLDWACGHGIDCGAIQPGGACFEPNNVVSHAAYAMNMYFQKSPKQPTDCDFSKTATVTSQNPSYNNC 445          
BLAST of CV884628 vs. ExPASy Swiss-Prot
Match: E132_ARATH (Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis thaliana GN=At1g66250 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 5.436e-15
Identity = 35/82 (42.68%), Postives = 51/82 (62.20%), Query Frame = 1
Query:    7 CVCKDGVGDPVLQKALDYACGAGA-DCNPIHSNGPCYNPNTVKAHCSYAVNSYFQRKGQAQGSCDFSGSATVATTDPSTAGC 249
            C  ++G    +LQ ALD+ACG G  DC+PI     CY P+ V AH +YA ++Y+ + G    +C+F+G A++ TTDPS   C
Sbjct:  369 CTAREGADTKMLQAALDWACGPGKIDCSPIKQGETCYEPDNVVAHANYAFDTYYHQTGNNPDACNFNGVASITTTDPSHGTC 450          
BLAST of CV884628 vs. ExPASy Swiss-Prot
Match: E134_ARATH (Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis thaliana GN=At3g13560 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.698e-14
Identity = 38/82 (46.34%), Postives = 47/82 (57.32%), Query Frame = 1
Query:    7 CVCKDGVGDPVLQKALDYACGAG-ADCNPIHSNGPCYNPNTVKAHCSYAVNSYFQRKGQAQGSCDFSGSATVATTDPSTAGC 249
            CV K    D  L   L++ACG G A+C  I    PCY PN VK+H S+A N Y+Q+   A G+CDF G+A   T DPS   C
Sbjct:  363 CVAKADADDDKLVDGLNWACGQGRANCAAIQPGQPCYLPNDVKSHASFAFNDYYQKMKSAGGTCDFDGTAITTTRDPSYRTC 444          
BLAST of CV884628 vs. ExPASy Swiss-Prot
Match: E1312_ARATH (Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis thaliana GN=At4g29360 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.645e-13
Identity = 32/82 (39.02%), Postives = 47/82 (57.32%), Query Frame = 1
Query:    7 CVCKDGVGDPVLQKALDYACGAG-ADCNPIHSNGPCYNPNTVKAHCSYAVNSYFQRKGQAQGSCDFSGSATVATTDPSTAGC 249
            C+         LQ ALD+ACG G  DC+ +  + PC+ P+TV +H SYA N+Y+Q+ G +   C F+G++     DPS   C
Sbjct:  392 CIASSQASVTELQTALDWACGPGNVDCSAVQPDQPCFEPDTVLSHASYAFNTYYQQSGASSIDCSFNGASVEVDKDPSYGNC 473          
The following BLAST results are available for this feature:
BLAST of CV884628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
E13L3_ARATH4.581e-3067.90Glucan endo-1,3-beta-glucosidase-like protein 3 OS... [more]
E13L2_ARATH5.241e-2660.49Glucan endo-1,3-beta-glucosidase-like protein 2 OS... [more]
E13L4_ARATH1.208e-2259.49Glucan endo-1,3-beta-glucosidase-like protein At1g... [more]
E131_ARATH1.250e-1952.44Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis ... [more]
E133_ARATH3.080e-1851.22Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis ... [more]
E13B_WHEAT1.528e-1746.91Glucan endo-1,3-beta-glucosidase OS=Triticum aesti... [more]
E137_ARATH1.868e-1545.68Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis ... [more]
E132_ARATH5.436e-1542.68Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis ... [more]
E134_ARATH2.698e-1446.34Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis ... [more]
E1312_ARATH6.645e-1339.02Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008F03_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T3_F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884628 ID=CV884628; Name=CV884628; organism=Citrus sinensis; type=EST; length=801bp
GACGTGTGTGTTTGCAAAGATGGAGTGGGTGACCCAGTTTTACAAAAAGC
TTTGGACTATGCTTGTGGAGCTGGGGCTGATTGTAACCCTATCCATTCCA
ATGGGCCTTGTTACAACCCCAACACTGTCAAAGCTCACTGCAGTTATGCT
GTCAACAGCTATTTCCAGAGAAAGGGTCAAGCTCAAGGCTCTTGTGATTT
TTCCGGAAGTGCAACCGTTGCCACTACCGATCCCAGCACTGCTGGCTGTT
CTTATCCTTCAAGTGCCAGCACTTCAGGCACCACCTCAACAACACCAGTC
ACAGGTACTCCAGGCACAACCACACCCACAACAACTCCGTCCACTACCAC
TCCAACGACTAACACACCAGGCAGCACCACACCAGGCAGCACCACTCCGG
GCAGCACCACTCCGTACACCACCACACCATCAACTGGAACTGGAGTGTTG
GGAGGAGTTGGTCCTGGTTTAGGCCCTTCGGGATCTGGTATGCCCAACAC
AGACTATAGTCATGGTGGGATGAGACTGCAAAACTCTGCCTTGTCTTTTT
TGGTCGTCCTCTTGTTCTCAGGCTCGATGCTCTTGTGGGGTTGAAAGAAA
CAATCAACATGACATCTACTAGGATGGAGATGTGGTACTATAGTCAGTGT
CCTTGATGCTGGATCTCAATGTGCAAAGATGGAGTATGCATGTGATTGTG
TTGTTAATTATCTAAAGACACCTTAATTAGCTGGCTAAGTTTCTTTTTCT
TTTCCTCTTCTACTTGTCAAAAAGAGATGATGAGCTTTTTAGTCCTTTTC
G
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