CV884625

Overview
NameCV884625
Unique NameCV884625
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length595
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1473 contig Csv1_Contig1473:65..659. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884625 vs. ExPASy Swiss-Prot
Match: RL34_TOBAC (60S ribosomal protein L34 OS=Nicotiana tabacum GN=RPL34 PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.135e-47
Identity = 91/95 (95.79%), Postives = 93/95 (97.89%), Query Frame = 2
Query:   14 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAF 298
            MVQRLTYRKRHSYATKSNQHRVVKTPGGKL+YQSTKKRASGPKCPVTGKRIQGIPHLRP EYKRSRL RNRRTVNRAYGGVLSG+AVRERIIRAF
Sbjct:    1 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQSTKKRASGPKCPVTGKRIQGIPHLRPTEYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAF 95          
BLAST of CV884625 vs. ExPASy Swiss-Prot
Match: RL34_PEA (60S ribosomal protein L34 OS=Pisum sativum GN=RPL34 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.556e-46
Identity = 90/95 (94.74%), Postives = 92/95 (96.84%), Query Frame = 2
Query:   14 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAF 298
            MVQRLTYR+RHSYATKSNQHRVVKTPGGKLVYQ+TKKRASGPKCPVTGKRIQGIPHLRP EYKRSRL RNRRTVNRAYGGVLSG AVRERIIRAF
Sbjct:    1 MVQRLTYRRRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPTEYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAF 95          
BLAST of CV884625 vs. ExPASy Swiss-Prot
Match: RL341_ARATH (60S ribosomal protein L34-1 OS=Arabidopsis thaliana GN=RPL34A PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 7.721e-46
Identity = 88/95 (92.63%), Postives = 92/95 (96.84%), Query Frame = 2
Query:   14 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAF 298
            MVQRL YR RHSYATKSNQHR+VKTPGGKLVYQ+TKKRASGPKCPVTGKRIQGIPHLRP+EYKRSRL RNRRTVNRAYGGVLSG+AVRERIIRAF
Sbjct:    1 MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPSEYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAF 95          
BLAST of CV884625 vs. ExPASy Swiss-Prot
Match: RL342_ARATH (60S ribosomal protein L34-2 OS=Arabidopsis thaliana GN=RPL34B PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 2.934e-45
Identity = 87/95 (91.58%), Postives = 90/95 (94.74%), Query Frame = 2
Query:   14 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAF 298
            MVQRL YR RHSYATKSNQHR+VKTPGGKL YQ+TKKRASGPKCPVTGKRIQGIPHLRP EYKRSRL RNRRTVNRAYGGVLSG+AVRERIIRAF
Sbjct:    1 MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTKKRASGPKCPVTGKRIQGIPHLRPTEYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAF 95          
BLAST of CV884625 vs. ExPASy Swiss-Prot
Match: RL343_ARATH (60S ribosomal protein L34-3 OS=Arabidopsis thaliana GN=RPL34C PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.484e-44
Identity = 85/95 (89.47%), Postives = 88/95 (92.63%), Query Frame = 2
Query:   14 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAF 298
            MVQRL YR RHSYATKSNQHR+VKTPGGKL YQ+T KRASGPKCPVTGKRIQGIPHLRPAEYKRSRL RN RTVNRAYGGVLSG AVRERI+RAF
Sbjct:    1 MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTNKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLARNERTVNRAYGGVLSGVAVRERIVRAF 95          
BLAST of CV884625 vs. ExPASy Swiss-Prot
Match: RL34_DICDI (60S ribosomal protein L34 OS=Dictyostelium discoideum GN=rpl34 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.672e-22
Identity = 54/95 (56.84%), Postives = 65/95 (68.42%), Query Frame = 2
Query:   14 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAF 298
            MVQRLTYR+R SY T SN  ++VKTPGG+LVYQ   K    P+C   G  + GIP LRP +YK   LP++RRTV+RAYGG      VR RI+RAF
Sbjct:    1 MVQRLTYRRRLSYRTTSNATKIVKTPGGRLVYQYIGKTGKVPRCGECGVNLAGIPALRPYQYK--NLPKSRRTVSRAYGGSKCAKCVRNRIVRAF 93          
BLAST of CV884625 vs. ExPASy Swiss-Prot
Match: RL34A_SCHPO (60S ribosomal protein L34-A OS=Schizosaccharomyces pombe GN=rpl34a PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.955e-21
Identity = 50/95 (52.63%), Postives = 68/95 (71.58%), Query Frame = 2
Query:   14 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAF 298
            M QR+TYR+R +Y T+SN+ R++KTPG  + Y   KK  + P+C  TG  +QGIP LRP E+  +RL  N++TV RAYGG LS  AV++RI+RAF
Sbjct:    1 MAQRVTYRRRLAYNTRSNRTRIIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRPREF--ARLSHNKKTVQRAYGGCLSANAVKDRIVRAF 93          
BLAST of CV884625 vs. ExPASy Swiss-Prot
Match: RL34B_SCHPO (60S ribosomal protein L34-B OS=Schizosaccharomyces pombe GN=rpl34b PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.915e-20
Identity = 49/95 (51.58%), Postives = 67/95 (70.53%), Query Frame = 2
Query:   14 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAF 298
            M QR+TYR+R +Y T+SN+ R++KTPG  + Y   KK  + P+C  TG  +QGIP LRP E+  +RL  N++ V RAYGG LS  AV++RI+RAF
Sbjct:    1 MAQRVTYRRRLAYNTRSNKTRIIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRPREF--ARLSHNQKKVQRAYGGCLSANAVKDRIVRAF 93          
BLAST of CV884625 vs. ExPASy Swiss-Prot
Match: RL34_AEDTR (60S ribosomal protein L34 OS=Aedes triseriatus GN=RpL34 PE=2 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 7.277e-20
Identity = 52/95 (54.74%), Postives = 66/95 (69.47%), Query Frame = 2
Query:   14 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAF 298
            MVQRLT R+R SY TKSN+ RVV+TPGG+LVY   KK+ + PKC    +++ GI   RP+E  R R+ R  +TV R +GGVL    +RERIIRAF
Sbjct:    1 MVQRLTLRRRLSYNTKSNKRRVVRTPGGRLVYLYVKKQRTVPKCGQCKEKLSGIKPSRPSE--RPRMCRRLKTVTRTFGGVLCHRCLRERIIRAF 93          
BLAST of CV884625 vs. ExPASy Swiss-Prot
Match: RL34_AEDAL (60S ribosomal protein L34 OS=Aedes albopictus GN=RpL34 PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 7.277e-20
Identity = 52/95 (54.74%), Postives = 66/95 (69.47%), Query Frame = 2
Query:   14 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAF 298
            MVQRLT R+R SY TKSN+ RVV+TPGG+LVY   KK+ + PKC    +++ GI   RP+E  R R+ R  +TV R +GGVL    +RERIIRAF
Sbjct:    1 MVQRLTLRRRLSYNTKSNKRRVVRTPGGRLVYLYVKKQRTVPKCGQCKEKLSGIKPSRPSE--RPRMCRRLKTVTRTFGGVLCHRCLRERIIRAF 93          
The following BLAST results are available for this feature:
BLAST of CV884625 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
RL34_TOBAC3.135e-4795.7960S ribosomal protein L34 OS=Nicotiana tabacum GN=... [more]
RL34_PEA1.556e-4694.7460S ribosomal protein L34 OS=Pisum sativum GN=RPL3... [more]
RL341_ARATH7.721e-4692.6360S ribosomal protein L34-1 OS=Arabidopsis thalian... [more]
RL342_ARATH2.934e-4591.5860S ribosomal protein L34-2 OS=Arabidopsis thalian... [more]
RL343_ARATH2.484e-4489.4760S ribosomal protein L34-3 OS=Arabidopsis thalian... [more]
RL34_DICDI2.672e-2256.8460S ribosomal protein L34 OS=Dictyostelium discoid... [more]
RL34A_SCHPO2.955e-2152.6360S ribosomal protein L34-A OS=Schizosaccharomyces... [more]
RL34B_SCHPO1.915e-2051.5860S ribosomal protein L34-B OS=Schizosaccharomyces... [more]
RL34_AEDTR7.277e-2054.7460S ribosomal protein L34 OS=Aedes triseriatus GN=... [more]
RL34_AEDAL7.277e-2054.7460S ribosomal protein L34 OS=Aedes albopictus GN=R... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_008F01_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T7_F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884625 ID=CV884625; Name=CV884625; organism=Citrus sinensis; type=EST; length=595bp
AGTGAGAGAGAAAATGGTTCAACGGCTTACGTACCGGAAGCGGCACAGCT
ATGCCACCAAATCGAACCAGCACCGCGTCGTCAAAACCCCTGGAGGGAAG
TTGGTGTACCAGAGCACGAAGAAAAGAGCTAGTGGACCTAAGTGTCCTGT
GACTGGCAAGAGAATTCAAGGGATTCCTCATTTGAGACCCGCTGAATATA
AGAGGTCCAGATTGCCCAGAAACAGGAGGACTGTGAACCGTGCTTATGGT
GGAGTATTGTCTGGAGCTGCTGTCAGGGAAAGAATCATCCGTGCCTTTTT
GGTGGAAGAGCAGAAGATTGTGAAGAAGGTCTTGAAGATTCAGAAGGCAA
AAGAGAAGCAAGCTGCTAAGAGTTAAGACTGGAATATTTAATGAGTTTCG
AACTACCTTTTAGTATATCTGTTGTTTTGGATGATGATATTGACTCATGG
AGAAGTAATCTAGGTTTTTCTTTATTTGAAATTGTAATCCCGCACTTGCT
TATATGAACTAAATTCTTAAAGCACTCAGTTGATAACCATTGTGGTGCTG
TTTTGTGTACTTTTATCAATTTAATGCCATTAGAGTTCCTTTCCT
back to top