CV884617

Overview
NameCV884617
Unique NameCV884617
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length819
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884617_ssr768 microsatellite CV884617_ssr768:768..779. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8981 contig Csv1_Contig8981:166..985. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884617 vs. ExPASy Swiss-Prot
Match: TXND9_ARATH (Thioredoxin domain-containing protein 9 homolog OS=Arabidopsis thaliana GN=At2g18990 PE=2 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 2.321e-69
Identity = 133/165 (80.61%), Postives = 147/165 (89.09%), Query Frame = -3
Query:  254 QQMKKMAEKRNRWISLGHGDYSEIQAEKDFFSVVKASDRVVCHFYRENWPCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKVDDYVVGFDELGGTDEFSTEELEERLAKAQVIFLEGESS---VKSGAETRRSVRQSTNPDSSDSE 739
            +QMKKMAEK+ RWISLGHG+YSEI +EKDFFSVVKAS+RVVCHFYRENWPCKVMDKHMSILAK+HIETRFVKI AEKSPFLAERLKIVVLPTLALIKN KVDDYVVGF+ELGG D+FSTE+LEER+A+AQVI  +GESS    KS  + RR+VRQS   D SDSE
Sbjct:   48 KQMKKMAEKKKRWISLGHGEYSEIHSEKDFFSVVKASERVVCHFYRENWPCKVMDKHMSILAKQHIETRFVKIQAEKSPFLAERLKIVVLPTLALIKNTKVDDYVVGFNELGGKDDFSTEDLEERIARAQVIHYDGESSSLKPKSTTQVRRNVRQSARSD-SDSE 211          
BLAST of CV884617 vs. ExPASy Swiss-Prot
Match: TXND9_HUMAN (Thioredoxin domain-containing protein 9 OS=Homo sapiens GN=TXNDC9 PE=1 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 8.603e-40
Identity = 72/137 (52.55%), Postives = 106/137 (77.37%), Query Frame = -3
Query:  332 QQMKKMAEKRNRWISLGHGDYSEIQAEKDFFSVVKASDRVVCHFYREN-WPCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKVDDYVVGFDELGGTDEFSTEELEERLAKAQVIFLEG 739
            Q ++K  +++  W+S GHG+Y EI +E+DFF  VK S+ VVCHFYR++ + CK++D+H++IL+KKH+ET+F+K++ EK+PFL ERL I V+PTLAL+K+ K  DYVVGF +LG TD+F+TE LE RL  + ++   G
Sbjct:   53 QALRKAQQQKQEWLSKGHGEYREIPSERDFFQEVKESENVVCHFYRDSTFRCKILDRHLAILSKKHLETKFLKLNVEKAPFLCERLHIKVIPTLALLKDGKTQDYVVGFTDLGNTDDFTTETLEWRLGSSDILNYSG 189          
BLAST of CV884617 vs. ExPASy Swiss-Prot
Match: TXND9_MOUSE (Thioredoxin domain-containing protein 9 OS=Mus musculus GN=Txndc9 PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.124e-39
Identity = 73/135 (54.07%), Postives = 106/135 (78.52%), Query Frame = -3
Query:  332 MKKMAEKRNRWISLGHGDYSEIQAEKDFFSVVKASDRVVCHFYREN-WPCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKVDDYVVGFDELGGTDEFSTEELEERLAKAQVIFLEG 733
            ++K  +++  W+S GHG+Y EI +E+DFF  VK S++VVCHFYR+  + CK++D+H++ILAKKH+ET+F+K++ EK+PFL ERL+I V+PTLAL+++ K  DYVVGF +LG TD+F+TE LE RL  + VI   G
Sbjct:   55 LRKAQQQKQEWLSKGHGEYREIGSERDFFQEVKESEKVVCHFYRDTTFRCKILDRHLAILAKKHLETKFLKLNVEKAPFLCERLRIKVIPTLALLRDGKTQDYVVGFTDLGNTDDFTTETLEWRLGCSDVINYSG 189          
BLAST of CV884617 vs. ExPASy Swiss-Prot
Match: TXND9_RAT (Thioredoxin domain-containing protein 9 OS=Rattus norvegicus GN=Txndc9 PE=2 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 5.576e-39
Identity = 72/135 (53.33%), Postives = 105/135 (77.78%), Query Frame = -3
Query:  332 MKKMAEKRNRWISLGHGDYSEIQAEKDFFSVVKASDRVVCHFYREN-WPCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKVDDYVVGFDELGGTDEFSTEELEERLAKAQVIFLEG 733
            ++K  +++  W+S GHG+Y EI +E+DFF  VK S++VVCHFYR+  + CK++D+H++ILAKKH+ET+F+K + EK+PFL ERL+I V+PTLAL+++ K  DY+VGF +LG TD+F+TE LE RL  + VI   G
Sbjct:   55 LRKAQQQKQEWLSKGHGEYREIGSERDFFQEVKESEKVVCHFYRDTTFRCKILDRHLAILAKKHLETKFLKPNVEKAPFLCERLRIKVIPTLALLRDGKTQDYIVGFTDLGNTDDFTTETLEWRLGCSDVINYSG 189          
BLAST of CV884617 vs. ExPASy Swiss-Prot
Match: TXND9_BOVIN (Thioredoxin domain-containing protein 9 OS=Bos taurus GN=TXNDC9 PE=2 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 2.767e-38
Identity = 70/137 (51.09%), Postives = 105/137 (76.64%), Query Frame = -3
Query:  332 QQMKKMAEKRNRWISLGHGDYSEIQAEKDFFSVVKASDRVVCHFYREN-WPCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKVDDYVVGFDELGGTDEFSTEELEERLAKAQVIFLEG 739
            + +KK  +++  W+S GHG+Y EI +E+DFF   K S +VVCHFYR++ + CK++D+H+ IL+KKH+ET+F+K++ EK+PFL ERL+I V+PTLAL+K+ K  D+VVGF +LG TD+F+TE LE RL  + ++   G
Sbjct:   53 EALKKAQQQKQEWLSKGHGEYREIPSERDFFQEDKESKKVVCHFYRDSTFRCKILDRHLVILSKKHLETKFLKLNVEKAPFLCERLRIKVIPTLALVKDGKTQDFVVGFSDLGNTDDFTTETLEWRLGCSDILNYSG 189          
BLAST of CV884617 vs. ExPASy Swiss-Prot
Match: TXND9_CAEEL (Thioredoxin domain-containing protein 9 homolog OS=Caenorhabditis elegans GN=tag-170 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 7.054e-34
Identity = 70/150 (46.67%), Postives = 102/150 (68.00%), Query Frame = -3
Query:  293 QQMKKMAEKRNRWISLGHGDYSEIQAEKDFFSVVKASDRVVCHFYRE-NWPCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKVDDYVVGFDELGGTDEFSTEELEERLAKAQVIFLEGESSVKSGAETRRS 739
            +QMKK  + R   +S GHG Y E+  EK+FF   K SD+VVC FY   N+ CK++DKH  ILA+KH+ TRF+ ++AEK  FL  RL I V+P++A++   +  DY+ GFDELGG DEF+TE +E RLA+++V+ +E + +  +  +  RS
Sbjct:   48 EQMKKAQKDRIEMLSHGHGKYEEVADEKEFFEATKKSDKVVCLFYLPGNFRCKIVDKHFEILARKHVGTRFIHVNAEKVHFLTTRLNIRVIPSIAIVVKQQTVDYIRGFDELGGKDEFTTETMENRLARSEVLTVEKKHTAPAKKKIIRS 197          
BLAST of CV884617 vs. ExPASy Swiss-Prot
Match: PHLP3_DICDI (Phosducin-like protein 3 OS=Dictyostelium discoideum GN=phlp3 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.129e-22
Identity = 56/142 (39.44%), Postives = 88/142 (61.97%), Query Frame = -3
Query:  317 QQMKKMAEKRNRWISLGHGDYSEIQAEKDFFSVVKASDRVVCHFYRENWP-CKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKVDDYVVGFDELGGTDEFSTEELEERLAKAQVIFLEGESSVK 739
            +Q+K+ ++ +  ++S  HG+  EI  E+DF   V  +D VV HFY  ++  CK++DK + ILAK H+ T+F+K++AEK+ F   +L I +LPTL    N    D  VGF+E GG D F  E+L  R++KA V+  +  + +K
Sbjct:   29 KQLKEESKLKQSFLST-HGELKEID-EQDFLKEVTGTDNVVVHFYHSDFQRCKILDKSLEILAKTHLGTKFLKVNAEKAQFFTGKLGIRILPTLVFFSNGIAVDRCVGFEEFGGIDSFKIEQLAIRISKAGVLDFKHTTGLK 168          
BLAST of CV884617 vs. ExPASy Swiss-Prot
Match: YERC_SCHPO (Thioredoxin domain-containing protein C2F3.12c OS=Schizosaccharomyces pombe GN=SPAC2F3.12c PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 3.181e-18
Identity = 52/146 (35.62%), Postives = 82/146 (56.16%), Query Frame = -3
Query:  260 GHGDYSEIQAEKDFFSVVKASDRVVCHFYRENW-PCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKVDDYVVGFDELGGTDEFSTEELEERLAKAQVI-FLEGESSVKSGAETRRSVRQSTNPDSSD 691
            GH  +  ++ E++      +S +VV HFY  ++  CK++D H+  +AK H ET+F++I A  +PFL  +L + VLP +    N+++ D ++GF +LG  D+F T  LE RL K+  I  L+ ESS  S         Q+   D SD
Sbjct:  133 GHMQFLTVENEREVMDFTLSSKKVVIHFYHPDFIRCKIIDSHLEKIAKVHWETKFIRIEAANAPFLVVKLGLKVLPAVLCYVNSQLVDKIIGFADLGNKDDFETSLLEFRLLKSSAIDRLKEESS--SNKSIYHDELQNNQSDDSD 276          
BLAST of CV884617 vs. ExPASy Swiss-Prot
Match: PLP1_YEAST (Phosducin-like protein 1 OS=Saccharomyces cerevisiae GN=PLP1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.529e-12
Identity = 51/148 (34.46%), Postives = 74/148 (50.00%), Query Frame = -3
Query:  254 GHGDYSEIQAEKDFFSVVKASDRVVCHFYRENW-PCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKVDDYVVGFDELGG-TDEFSTEELEERLAKAQVIFLEGESSVKSGAETRRSVRQSTNPDSSDSE 691
            G+G    I  E D   +   +  VV HF  E +  C+ M++ +  LAK+++ TRF+K++ +  PFL  +L I VLP +   KN       VGF +LG   + F    LE+ LA + VI    E    S   T R    STN D S+S+
Sbjct:   80 GYGRLQCIDNEADAIQICTKTTMVVIHFELETFGKCQYMNEKLENLAKRYLTTRFIKVNVQTCPFLVNKLNIKVLPFVVGYKNGLEKVRYVGFSKLGNDPNGFDIRRLEQSLAHSGVIEDTFEIRKHSSVNTERFA--STNHDRSESD 225          
The following BLAST results are available for this feature:
BLAST of CV884617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
TXND9_ARATH2.321e-6980.61Thioredoxin domain-containing protein 9 homolog OS... [more]
TXND9_HUMAN8.603e-4052.55Thioredoxin domain-containing protein 9 OS=Homo sa... [more]
TXND9_MOUSE1.124e-3954.07Thioredoxin domain-containing protein 9 OS=Mus mus... [more]
TXND9_RAT5.576e-3953.33Thioredoxin domain-containing protein 9 OS=Rattus ... [more]
TXND9_BOVIN2.767e-3851.09Thioredoxin domain-containing protein 9 OS=Bos tau... [more]
TXND9_CAEEL7.054e-3446.67Thioredoxin domain-containing protein 9 homolog OS... [more]
PHLP3_DICDI2.129e-2239.44Phosducin-like protein 3 OS=Dictyostelium discoide... [more]
YERC_SCHPO3.181e-1835.62Thioredoxin domain-containing protein C2F3.12c OS=... [more]
PLP1_YEAST1.529e-1234.46Phosducin-like protein 1 OS=Saccharomyces cerevisi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008E09_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T7_E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884617 ID=CV884617; Name=CV884617; organism=Citrus sinensis; type=EST; length=819bp
CATGATTACTTAATTTCAACTAATGAGGAATTCAGCATTTCACGAAGAAT
TCACAAACCATGCTATACATGTGTCCTCAATGACAATAATAGTAGAGATT
GAAAGGAGAAAAAAGCATTTAAGATGATCACCTTATACTATATAAATCAA
ATGACTAATGACTATGCTACACCCCAGGGAGCAGCCAAAACCATAAACCT
CCGTTCTTCAGCATATAATTGAAGTAGAATTCATTACTTGGCCATACAGT
TCATTCTGAATCTGACGAATCAGGATTCGTGCTCTGCCGGACACTCCTTC
TGGTTTCTGCACCAGATTTAACTGATGATTCCCCCTCCAAAAAGATGACC
TGAGCTTTAGCTAACCTCTCCTCTAGTTCTTCCGTGCTGAACTCATCTGT
CCCACCAAGCTCATCAAACCCCACCACATAATCATCCACTTTGGCATTTT
TTATGAGTGCAAGAGTAGGAAGAACCACAATCTTAAGCCTCTCAGCCAAA
AAAGGACTTTTCTCTGCATGGATTTTCACAAACCGTGTCTCTATGTGTTT
CTTTGCCAGTATACTCATGTGCTTATCCATTACTTTGCAAGGCCAATTTT
CTCGGTAGAAGTGGCAAACGACGCGATCGCTGGCCTTGACGACGGAAAAG
AAGTCTTTTTCAGCTTGAATCTCGGAGTAATCGCCGTGGCCGAGGGAGAT
CCAACGGTTGCGCTTCTCCGCCATTTTCTTCATCTGTTGTAGCCGCCGTT
CCCTCAGAGCCTCCAGATCGTCGTCGTCGAGCCGATCTATTGCTGCTATT
TCTTCATCGAGCTTCTCCT
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