CV884616

Overview
NameCV884616
Unique NameCV884616
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length522
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884616_ssr130 microsatellite CV884616_ssr130:130..141. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CV884616 vs. ExPASy Swiss-Prot
Match: TXND9_ARATH (Thioredoxin domain-containing protein 9 homolog OS=Arabidopsis thaliana GN=At2g18990 PE=2 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 1.357e-63
Identity = 122/165 (73.94%), Postives = 135/165 (81.82%), Query Frame = 2
Query:   26 MENPKVQEILEKQLLTVAKAVEEKLXXXXXXXXXXXXXXXXXXXXXXXQQMKKMAEKRNRWISLGHGDYSEIQAEKDFFSVVKASDRVVCHFYRENWPCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKVDDYVVGFDELGGTDEF 520
            M NP +QEILEKQ+LTVAKA+E+K+                       +QMKKMAEK+ RWISLGHG+YSEI +EKDFFSVVKAS+RVVCHFYRENWPCKVMDKHMSILAK+HIETRFVKI AEKSPFLAERLKIVVLPTLALIKN KVDDYVVGF+ELGG D+F
Sbjct:    1 MANP-IQEILEKQVLTVAKAMEDKIDDEIASLEKLDEDDLEVLRERRLKQMKKMAEKKKRWISLGHGEYSEIHSEKDFFSVVKASERVVCHFYRENWPCKVMDKHMSILAKQHIETRFVKIQAEKSPFLAERLKIVVLPTLALIKNTKVDDYVVGFNELGGKDDF 164          
BLAST of CV884616 vs. ExPASy Swiss-Prot
Match: TXND9_HUMAN (Thioredoxin domain-containing protein 9 OS=Homo sapiens GN=TXNDC9 PE=1 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 6.781e-39
Identity = 75/159 (47.17%), Postives = 107/159 (67.30%), Query Frame = 2
Query:   47 EILEKQLLTVAKAVEEKLXXXXXXXXXXXXXXXXXXXXXXXQQMKKMAEKRNRWISLGHGDYSEIQAEKDFFSVVKASDRVVCHFYREN-WPCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKVDDYVVGFDELGGTDEF 520
            ++LE QLL   K VEE L                       Q ++K  +++  W+S GHG+Y EI +E+DFF  VK S+ VVCHFYR++ + CK++D+H++IL+KKH+ET+F+K++ EK+PFL ERL I V+PTLAL+K+ K  DYVVGF +LG TD+F
Sbjct:   12 KVLEHQLLQTTKLVEEHLDSEIQKLDQMDEDELERLKEKRLQALRKAQQQKQEWLSKGHGEYREIPSERDFFQEVKESENVVCHFYRDSTFRCKILDRHLAILSKKHLETKFLKLNVEKAPFLCERLHIKVIPTLALLKDGKTQDYVVGFTDLGNTDDF 170          
BLAST of CV884616 vs. ExPASy Swiss-Prot
Match: TXND9_MOUSE (Thioredoxin domain-containing protein 9 OS=Mus musculus GN=Txndc9 PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.511e-38
Identity = 74/159 (46.54%), Postives = 106/159 (66.67%), Query Frame = 2
Query:   47 EILEKQLLTVAKAVEEKLXXXXXXXXXXXXXXXXXXXXXXXQQMKKMAEKRNRWISLGHGDYSEIQAEKDFFSVVKASDRVVCHFYREN-WPCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKVDDYVVGFDELGGTDEF 520
            E+LE Q L  AK VE  L                         ++K  +++  W+S GHG+Y EI +E+DFF  VK S++VVCHFYR+  + CK++D+H++ILAKKH+ET+F+K++ EK+PFL ERL+I V+PTLAL+++ K  DYVVGF +LG TD+F
Sbjct:   12 EVLENQFLQAAKLVENHLDSEIQKLDQIGEDELELLKEKRLAALRKAQQQKQEWLSKGHGEYREIGSERDFFQEVKESEKVVCHFYRDTTFRCKILDRHLAILAKKHLETKFLKLNVEKAPFLCERLRIKVIPTLALLRDGKTQDYVVGFTDLGNTDDF 170          
BLAST of CV884616 vs. ExPASy Swiss-Prot
Match: TXND9_RAT (Thioredoxin domain-containing protein 9 OS=Rattus norvegicus GN=Txndc9 PE=2 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 7.497e-38
Identity = 73/159 (45.91%), Postives = 105/159 (66.04%), Query Frame = 2
Query:   47 EILEKQLLTVAKAVEEKLXXXXXXXXXXXXXXXXXXXXXXXQQMKKMAEKRNRWISLGHGDYSEIQAEKDFFSVVKASDRVVCHFYREN-WPCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKVDDYVVGFDELGGTDEF 520
            E+LE Q L  AK VE  L                         ++K  +++  W+S GHG+Y EI +E+DFF  VK S++VVCHFYR+  + CK++D+H++ILAKKH+ET+F+K + EK+PFL ERL+I V+PTLAL+++ K  DY+VGF +LG TD+F
Sbjct:   12 EVLENQFLQAAKLVENHLDSEIQKLDQIGEDELELLKEKRLAALRKAQQQKQEWLSKGHGEYREIGSERDFFQEVKESEKVVCHFYRDTTFRCKILDRHLAILAKKHLETKFLKPNVEKAPFLCERLRIKVIPTLALLRDGKTQDYIVGFTDLGNTDDF 170          
BLAST of CV884616 vs. ExPASy Swiss-Prot
Match: TXND9_BOVIN (Thioredoxin domain-containing protein 9 OS=Bos taurus GN=TXNDC9 PE=2 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 7.497e-38
Identity = 73/159 (45.91%), Postives = 106/159 (66.67%), Query Frame = 2
Query:   47 EILEKQLLTVAKAVEEKLXXXXXXXXXXXXXXXXXXXXXXXQQMKKMAEKRNRWISLGHGDYSEIQAEKDFFSVVKASDRVVCHFYREN-WPCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKVDDYVVGFDELGGTDEF 520
            ++LE QLL   K VEE L                       + +KK  +++  W+S GHG+Y EI +E+DFF   K S +VVCHFYR++ + CK++D+H+ IL+KKH+ET+F+K++ EK+PFL ERL+I V+PTLAL+K+ K  D+VVGF +LG TD+F
Sbjct:   12 KVLENQLLQTTKLVEEHLDSEIQKLDQMDEDELERLKEKRLEALKKAQQQKQEWLSKGHGEYREIPSERDFFQEDKESKKVVCHFYRDSTFRCKILDRHLVILSKKHLETKFLKLNVEKAPFLCERLRIKVIPTLALVKDGKTQDFVVGFSDLGNTDDF 170          
BLAST of CV884616 vs. ExPASy Swiss-Prot
Match: TXND9_CAEEL (Thioredoxin domain-containing protein 9 homolog OS=Caenorhabditis elegans GN=tag-170 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 8.877e-31
Identity = 68/161 (42.24%), Postives = 95/161 (59.01%), Query Frame = 2
Query:   41 VQEILEKQLLTVAKAVEEKLXXXXXXXXXXXXXXXXXXXXXXXQQMKKMAEKRNRWISLGHGDYSEIQAEKDFFSVVKASDRVVCHFYRE-NWPCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKVDDYVVGFDELGGTDEF 520
            +Q+   +QLL  A+ VEE++                       +QMKK  + R   +S GHG Y E+  EK+FF   K SD+VVC FY   N+ CK++DKH  ILA+KH+ TRF+ ++AEK  FL  RL I V+P++A++   +  DY+ GFDELGG DEF
Sbjct:    5 IQQQFGEQLLRAAQVVEEQIDQEMNKLENLEEDDLEVIRRQRMEQMKKAQKDRIEMLSHGHGKYEEVADEKEFFEATKKSDKVVCLFYLPGNFRCKIVDKHFEILARKHVGTRFIHVNAEKVHFLTTRLNIRVIPSIAIVVKQQTVDYIRGFDELGGKDEF 165          
BLAST of CV884616 vs. ExPASy Swiss-Prot
Match: PHLP3_DICDI (Phosducin-like protein 3 OS=Dictyostelium discoideum GN=phlp3 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.051e-19
Identity = 49/118 (41.53%), Postives = 74/118 (62.71%), Query Frame = 2
Query:  170 QQMKKMAEKRNRWISLGHGDYSEIQAEKDFFSVVKASDRVVCHFYRENWP-CKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKVDDYVVGFDELGGTDEF 520
            +Q+K+ ++ +  ++S  HG+  EI  E+DF   V  +D VV HFY  ++  CK++DK + ILAK H+ T+F+K++AEK+ F   +L I +LPTL    N    D  VGF+E GG D F
Sbjct:   29 KQLKEESKLKQSFLST-HGELKEID-EQDFLKEVTGTDNVVVHFYHSDFQRCKILDKSLEILAKTHLGTKFLKVNAEKAQFFTGKLGIRILPTLVFFSNGIAVDRCVGFEEFGGIDSF 144          
BLAST of CV884616 vs. ExPASy Swiss-Prot
Match: YERC_SCHPO (Thioredoxin domain-containing protein C2F3.12c OS=Schizosaccharomyces pombe GN=SPAC2F3.12c PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 5.228e-15
Identity = 36/102 (35.29%), Postives = 63/102 (61.76%), Query Frame = 2
Query:  218 GHGDYSEIQAEKDFFSVVKASDRVVCHFYRENW-PCKVMDKHMSILAKKHIETRFVKIHAEKSPFLAERLKIVVLPTLALIKNAKVDDYVVGFDELGGTDEF 520
            GH  +  ++ E++      +S +VV HFY  ++  CK++D H+  +AK H ET+F++I A  +PFL  +L + VLP +    N+++ D ++GF +LG  D+F
Sbjct:  133 GHMQFLTVENEREVMDFTLSSKKVVIHFYHPDFIRCKIIDSHLEKIAKVHWETKFIRIEAANAPFLVVKLGLKVLPAVLCYVNSQLVDKIIGFADLGNKDDF 234          
The following BLAST results are available for this feature:
BLAST of CV884616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
TXND9_ARATH1.357e-6373.94Thioredoxin domain-containing protein 9 homolog OS... [more]
TXND9_HUMAN6.781e-3947.17Thioredoxin domain-containing protein 9 OS=Homo sa... [more]
TXND9_MOUSE1.511e-3846.54Thioredoxin domain-containing protein 9 OS=Mus mus... [more]
TXND9_RAT7.497e-3845.91Thioredoxin domain-containing protein 9 OS=Rattus ... [more]
TXND9_BOVIN7.497e-3845.91Thioredoxin domain-containing protein 9 OS=Bos tau... [more]
TXND9_CAEEL8.877e-3142.24Thioredoxin domain-containing protein 9 homolog OS... [more]
PHLP3_DICDI2.051e-1941.53Phosducin-like protein 3 OS=Dictyostelium discoide... [more]
YERC_SCHPO5.228e-1535.29Thioredoxin domain-containing protein C2F3.12c OS=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008E09_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T3_E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884616 ID=CV884616; Name=CV884616; organism=Citrus sinensis; type=EST; length=522bp
GACGTTCCCTCCTTATTCAACAAAAATGGAAAATCCCAAAGTTCAAGAAA
TTTTGGAAAAGCAACTGCTCACAGTAGCGAAAGCCGTAGAGGAGAAGCTC
GATGAAGAAATAGCAGCAATAGATCGGCTCGACGACGACGATCTGGAGGC
TCTGAGGGAACGGCGGCTACAACAGATGAAGAAAATGGCGGAGAAGCGCA
ACCGTTGGATCTCCCTCGGCCACGGCGATTACTCCGAGATTCAAGCTGAA
AAAGACTTCTTTTCCGTCGTCAAGGCCAGCGATCGCGTCGTTTGCCACTT
CTACCGAGAAAATTGGCCTTGCAAAGTAATGGATAAGCACATGAGTATAC
TGGCAAAGAAACACATAGAGACACGGTTTGTGAAAATCCATGCAGAGAAA
AGTCCTTTTTTGGCTGAGAGGCTTAAGATTGTGGTTCTTCCTACTCTTGC
ACTCATAAAAAATGCCAAAGTGGATGATTATGTGGTGGGGTTTGATGAGC
TTGGTGGGACAGATGAGTTCAG
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