CV884615

Overview
NameCV884615
Unique NameCV884615
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7710 contig Csv1_Contig7710:559..1372. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884615 vs. ExPASy Swiss-Prot
Match: THF1_ARATH (Protein THYLAKOID FORMATION 1, chloroplastic OS=Arabidopsis thaliana GN=THF1 PE=1 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 3.317e-60
Identity = 116/174 (66.67%), Postives = 137/174 (78.74%), Query Frame = -3
Query:  291 TVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGILNDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRSVDRDLDVYRNXXXXXXXXXXXXKEYVDXXXXXXXXRTEPQKANEAIKKCLGEYLYS 812
            TVYD+LMEGYPSD+DR+AIF+AYI AL EDP+QYRIDAQK+EEWAR QT++SLV+F SKEG++E +L DIA RA  K  FSYSRFFAVGLFRLLELA+AT+PTVL+KLCA LN+NK+SVDRDLDVYRN            KEYV+        R + QKANE I KCLG+ LY+
Sbjct:  118 TVYDQLMEGYPSDQDRDAIFKAYIEALNEDPKQYRIDAQKMEEWARSQTSASLVDFSSKEGDIEAVLKDIAGRAGSKEGFSYSRFFAVGLFRLLELASATDPTVLDKLCASLNINKKSVDRDLDVYRNLLSKLVQAKELLKEYVEREKKKQGERAQSQKANETISKCLGDTLYN 291          
BLAST of CV884615 vs. ExPASy Swiss-Prot
Match: THF1_ORYSJ (Protein THYLAKOID FORMATION1, chloroplastic OS=Oryza sativa subsp. japonica GN=THF1 PE=2 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 5.657e-60
Identity = 116/166 (69.88%), Postives = 133/166 (80.12%), Query Frame = -3
Query:  315 TVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGILNDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRSVDRDLDVYRNXXXXXXXXXXXXKEYVDXXXXXXXXRTEPQKANEAIKK 812
            TVYD+LMEGYPS+EDR+AIF+AYITAL EDPEQYR DAQK+EEWAR Q  +SLVEF SK+GE+E IL DI+ERA GKG+FSYSRFFAVGLFRLLELANATEPT+L+KLCA LN+NKRSVDRDLDVYRN            KEYV+        R+E  K+NEA+ K
Sbjct:  112 TVYDQLMEGYPSNEDRDAIFKAYITALNEDPEQYRADAQKMEEWARSQNGNSLVEFSSKDGEIEAILKDISERAQGKGSFSYSRFFAVGLFRLLELANATEPTILDKLCAALNINKRSVDRDLDVYRNILSKLVQAKELLKEYVEREKKKREERSETPKSNEAVTK 277          
BLAST of CV884615 vs. ExPASy Swiss-Prot
Match: THF1_SOLTU (Protein THYLAKOID FORMATION1, chloroplastic OS=Solanum tuberosum GN=THF1 PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.393e-58
Identity = 116/174 (66.67%), Postives = 131/174 (75.29%), Query Frame = -3
Query:  291 TVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGILNDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRSVDRDLDVYRNXXXXXXXXXXXXKEYVDXXXXXXXXRTEPQKANEAIKKCLGEYLYS 812
            TVYD+LMEGYPS+EDR AIF+AYI ALKEDPEQYR DAQKLEEWAR Q A++LV+F SKEGE+E I  DIA+RA  K  F YSR FAVGLFRLLELAN T+PT+LEKLCA LNVNK+SVDRDLDVYRN            KEYV+          E QKANE + KCLG+Y Y+
Sbjct:  119 TVYDQLMEGYPSEEDRNAIFKAYIEALKEDPEQYRADAQKLEEWARTQNANTLVDFSSKEGEIENIFKDIAQRAGTKDGFCYSRLFAVGLFRLLELANVTDPTILEKLCAALNVNKKSVDRDLDVYRNLLSKLVQAKELLKEYVE-REKKKRGERETQKANETVTKCLGDYQYA 291          
BLAST of CV884615 vs. ExPASy Swiss-Prot
Match: THF1_ACAM1 (Protein thf1 OS=Acaryochloris marina (strain MBIC 11017) GN=thf1 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.548e-16
Identity = 49/139 (35.25%), Postives = 81/139 (58.27%), Query Frame = -3
Query:  432 TVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEG-----EVEGILNDIAERASGKGNFSYSRFFAVGLFRLLELA--NATE-----PTVLEKLCAVLNVNKRSVDRDLDVYR 812
            T +DR M+GY  + D++AIF A   A + DP Q + D Q+L E A+ ++A  ++++ ++       E++  L +IA+       F YSR FA+GLF LLEL+  N T+        L  +C VLN+++  + +DL++YR
Sbjct:   58 TSFDRFMDGYQPENDKDAIFSAICKAQEADPVQMKKDGQRLTELAQSKSAQEMLDWITQAANSGGDELQWQLRNIAQNP----KFKYSRLFAIGLFTLLELSEGNITQDEESLAEFLPNICTVLNISESKLQKDLEIYR 192          
BLAST of CV884615 vs. ExPASy Swiss-Prot
Match: THF1_TRIEI (Protein thf1 OS=Trichodesmium erythraeum (strain IMS101) GN=thf1 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.905e-15
Identity = 49/135 (36.30%), Postives = 73/135 (54.07%), Query Frame = -3
Query:  435 TVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEF--PSKEGEVEGILNDIAERASGKGNFSYSRFFAVGLFRLLELANA-------TEPTVLEKLCAVLNVNKRSVDRDLDVY 812
            T +DR M+GY   ED+ +IF A I   +EDP +YR DA+ LE+ A   +AS ++ +   SK  +    L D     S    F YSR FA+GLF LLE+ +             L+K+C  LN+ +  + +D+D+Y
Sbjct:   58 TAFDRFMQGYSPQEDKTSIFNALIQGQEEDPNKYRSDAKGLEDLAGKISASDILSWICLSKNIDNTQYLQDDLRAISENSKFRYSRLFAIGLFTLLEIVDTELIKEQEKRTEALKKICQSLNLVEEKLLKDIDLY 192          
BLAST of CV884615 vs. ExPASy Swiss-Prot
Match: THF1_ANASP (Protein thf1 OS=Anabaena sp. (strain PCC 7120) GN=thf1 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.244e-15
Identity = 45/137 (32.85%), Postives = 77/137 (56.20%), Query Frame = -3
Query:  429 TVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEV--EGILNDIAERASGKGNFSYSRFFAVGLFRLLELAN-------ATEPTVLEKLCAVLNVNKRSVDRDLDVYRN 812
            T +DR MEGY  + D+E+IF A   A++++P++YR DA++L+  A+    + LV + S+   +  +  L    +  +   NF YSR FA+GLF LLE +N             L+ + A L+++     +DL++YR+
Sbjct:   58 TTFDRFMEGYQPERDKESIFSAICQAVEQEPQRYRQDAERLQAVAQSLPVNDLVAWLSQANHLQQDADLQAQLQAIANNSNFKYSRLFAIGLFTLLEQSNPDLVKDEKQRTEALKSIAAGLHLSDDKFSKDLELYRS 194          
BLAST of CV884615 vs. ExPASy Swiss-Prot
Match: THF1_ANAVT (Protein thf1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=thf1 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.613e-14
Identity = 44/137 (32.12%), Postives = 78/137 (56.93%), Query Frame = -3
Query:  429 TVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEV--EGILNDIAERASGKGNFSYSRFFAVGLFRLLELAN-------ATEPTVLEKLCAVLNVNKRSVDRDLDVYRN 812
            T +DR M+GY  + D+E+IF A   A++++P++YR DA++L+  A+    + LV + S+   +  +  L    +  +   NF YSR FA+GLF LLE +N             L+ + A L+++   + +DL++YR+
Sbjct:   58 TTFDRFMQGYQPERDKESIFSAICQAVEQEPQRYRQDAERLKAVAQSLPVNDLVAWLSQANHLQQDADLQAQLQAIASNPNFKYSRLFAIGLFTLLEQSNPDLVKDEKQRTEALKTIAAGLHLSDDKLSKDLELYRS 194          
BLAST of CV884615 vs. ExPASy Swiss-Prot
Match: THF1_NOSP7 (Protein thf1 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=thf1 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.751e-14
Identity = 46/141 (32.62%), Postives = 81/141 (57.45%), Query Frame = -3
Query:  429 TVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLV------EFPSKEGEVEGILNDIAERASGKGNFSYSRFFAVGLFRLLELAN----ATEPTVLEKLCAV---LNVNKRSVDRDLDVYRN 812
            T +DR M+GY  + D+E+IF A   A+++DP+ YR DA++L+  A+G     L+       +  ++ +++  L  IA       NF Y+R FA+G+F LLE ++      E  + E L A+   L+V+   +++DL++YR+
Sbjct:   58 TTFDRFMQGYEPERDQESIFNALCRAIEQDPQHYRQDAERLQAIAKGLPVKDLIGWLGQTTYLDRDADLQAQLQAIANNP----NFKYNRLFAIGVFSLLEQSDPELVKDEKQLTEALKAIAAGLHVSDDKLNKDLELYRS 194          
BLAST of CV884615 vs. ExPASy Swiss-Prot
Match: THF1_CYAP7 (Protein thf1 OS=Cyanothece sp. (strain PCC 7424) GN=thf1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.392e-12
Identity = 43/138 (31.16%), Postives = 76/138 (55.07%), Query Frame = -3
Query:  429 TVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGILNDIAERASGKGN---FSYSRFFAVGLFRLL-----ELANATE--PTVLEKLCAVLNVNKRSVDRDLDVYRN 812
            T + R M+GY  D D+E+IF A   ++  DP+QYR DA+++ E A+  +A  L+       +     N I +   G  N   + Y+R FA+G++ +L     E+   TE    V++++  VL++ +  + +DLD+YR+
Sbjct:   58 TSFQRFMQGYRPDADKESIFNALCQSVGGDPQQYRQDAERMIESAKQLSAQQLLFNLESASDSSSGENQILQTLIGIANAPKYKYTRLFAIGIYTILAETDPEMLKNTEKREEVVKQIAKVLHLPEEKMQKDLDLYRS 195          
BLAST of CV884615 vs. ExPASy Swiss-Prot
Match: THF1_CYAP4 (Protein thf1 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=thf1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.737e-12
Identity = 48/136 (35.29%), Postives = 73/136 (53.68%), Query Frame = -3
Query:  429 TVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGILNDIAERA-SGKGNFSYSRFFAVGLFRLLELA-------NATEPTVLEKLCAVLNVNKRSVDRDLDVYRN 812
            T ++R M+GY    D+ +IF A   A + DP+Q + DAQ+L    RGQ+  SL+++ S    + G       RA +    F YSR FAVGLF LLE A        A    VL+++  V+++    + +DL+ YR+
Sbjct:   58 TTFERFMQGYHPPADQTSIFNAICLAQELDPQQVQQDAQELLGRVRGQSLESLLDWISTAASLGGDEQQNRLRAIASNPTFKYSRLFAVGLFTLLEQAEPELGKDEARLLQVLQQVGEVMHLPVEKMQKDLEQYRS 193          
The following BLAST results are available for this feature:
BLAST of CV884615 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
THF1_ARATH3.317e-6066.67Protein THYLAKOID FORMATION 1, chloroplastic OS=Ar... [more]
THF1_ORYSJ5.657e-6069.88Protein THYLAKOID FORMATION1, chloroplastic OS=Ory... [more]
THF1_SOLTU1.393e-5866.67Protein THYLAKOID FORMATION1, chloroplastic OS=Sol... [more]
THF1_ACAM16.548e-1635.25Protein thf1 OS=Acaryochloris marina (strain MBIC ... [more]
THF1_TRIEI1.905e-1536.30Protein thf1 OS=Trichodesmium erythraeum (strain I... [more]
THF1_ANASP4.244e-1532.85Protein thf1 OS=Anabaena sp. (strain PCC 7120) GN=... [more]
THF1_ANAVT1.613e-1432.12Protein thf1 OS=Anabaena variabilis (strain ATCC 2... [more]
THF1_NOSP72.751e-1432.62Protein thf1 OS=Nostoc punctiforme (strain ATCC 29... [more]
THF1_CYAP74.392e-1231.16Protein thf1 OS=Cyanothece sp. (strain PCC 7424) G... [more]
THF1_CYAP45.737e-1235.29Protein thf1 OS=Cyanothece sp. (strain PCC 7425 / ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008E08_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T7_E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884615 ID=CV884615; Name=CV884615; organism=Citrus sinensis; type=EST; length=814bp
TTAAAGAAAACTGCAATCCTGATTTGTATGAATGTTGCGGTAGAATTATG
AATAGAAAAATACATTTGGCAAAAACAGAAGAAATTTGTGTATTAGCATG
GTGAAGACTGGATGTATGCAAATCACCGTATTAAAAACAGTACACTGAAA
CATGCAAGCCTGTAAGCTTAAAACATGGTACATGGAGCATTGAGGCTCCA
ACTCTACCGCAAAGCAGACAAAAACGGGATGGAAACTTCACAAGAGATGA
TTAGCATTGCCGGCTTCCTTCACAGGTTGAATTACTGATGGGAATATAGG
TATTCTCCCAGACATTTTTTAATGGCTTCATTAGCCTTTTGCGGTTCTGT
CCTTTCTTCTCTCTTCTTCTTTTCCCTATCCACATACTCCTTCAGCAACT
CTTTAGCTTGAAGCAGCTTGGATAATAAATTGCGATATACATCAAGGTCA
CGATCCACACTTCTTTTGTTAACATTTAAGACTGCACAAAGCTTTTCTAA
CACTGTGGGTTCAGTTGCATTTGCCAGTTCAAGAAGGCGAAACAGCCCAA
CAGCAAAGAAACGGCTGTAGCTGAAATTCCCCTTGCCGCTGGCTCTTTCT
GCAATGTCGTTCAATATCCCCTCAACTTCTCCTTCTTTAGATGGGAACTC
AACTAATGAACTGGCAGTCTGACCCCGAGCCCATTCCTCTAACTTTTGTG
CATCAATTCTGTATTGCTCTGGATCCTCCTTCAGTGCCGTAATGTATGCT
TGGAAGATGGCTTCTCGATCCTCATCACTTGGATAGCCTTCCATGAGTCG
ATCATATACAGTGA
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