CV884615
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CV884615 vs. ExPASy Swiss-Prot
Match: THF1_ARATH (Protein THYLAKOID FORMATION 1, chloroplastic OS=Arabidopsis thaliana GN=THF1 PE=1 SV=1) HSP 1 Score: 231.876 bits (590), Expect = 3.317e-60 Identity = 116/174 (66.67%), Postives = 137/174 (78.74%), Query Frame = -3 Query: 291 TVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGILNDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRSVDRDLDVYRNXXXXXXXXXXXXKEYVDXXXXXXXXRTEPQKANEAIKKCLGEYLYS 812 TVYD+LMEGYPSD+DR+AIF+AYI AL EDP+QYRIDAQK+EEWAR QT++SLV+F SKEG++E +L DIA RA K FSYSRFFAVGLFRLLELA+AT+PTVL+KLCA LN+NK+SVDRDLDVYRN KEYV+ R + QKANE I KCLG+ LY+ Sbjct: 118 TVYDQLMEGYPSDQDRDAIFKAYIEALNEDPKQYRIDAQKMEEWARSQTSASLVDFSSKEGDIEAVLKDIAGRAGSKEGFSYSRFFAVGLFRLLELASATDPTVLDKLCASLNINKKSVDRDLDVYRNLLSKLVQAKELLKEYVEREKKKQGERAQSQKANETISKCLGDTLYN 291
BLAST of CV884615 vs. ExPASy Swiss-Prot
Match: THF1_ORYSJ (Protein THYLAKOID FORMATION1, chloroplastic OS=Oryza sativa subsp. japonica GN=THF1 PE=2 SV=1) HSP 1 Score: 231.106 bits (588), Expect = 5.657e-60 Identity = 116/166 (69.88%), Postives = 133/166 (80.12%), Query Frame = -3 Query: 315 TVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGILNDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRSVDRDLDVYRNXXXXXXXXXXXXKEYVDXXXXXXXXRTEPQKANEAIKK 812 TVYD+LMEGYPS+EDR+AIF+AYITAL EDPEQYR DAQK+EEWAR Q +SLVEF SK+GE+E IL DI+ERA GKG+FSYSRFFAVGLFRLLELANATEPT+L+KLCA LN+NKRSVDRDLDVYRN KEYV+ R+E K+NEA+ K Sbjct: 112 TVYDQLMEGYPSNEDRDAIFKAYITALNEDPEQYRADAQKMEEWARSQNGNSLVEFSSKDGEIEAILKDISERAQGKGSFSYSRFFAVGLFRLLELANATEPTILDKLCAALNINKRSVDRDLDVYRNILSKLVQAKELLKEYVEREKKKREERSETPKSNEAVTK 277
BLAST of CV884615 vs. ExPASy Swiss-Prot
Match: THF1_SOLTU (Protein THYLAKOID FORMATION1, chloroplastic OS=Solanum tuberosum GN=THF1 PE=2 SV=1) HSP 1 Score: 226.483 bits (576), Expect = 1.393e-58 Identity = 116/174 (66.67%), Postives = 131/174 (75.29%), Query Frame = -3 Query: 291 TVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGILNDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRSVDRDLDVYRNXXXXXXXXXXXXKEYVDXXXXXXXXRTEPQKANEAIKKCLGEYLYS 812 TVYD+LMEGYPS+EDR AIF+AYI ALKEDPEQYR DAQKLEEWAR Q A++LV+F SKEGE+E I DIA+RA K F YSR FAVGLFRLLELAN T+PT+LEKLCA LNVNK+SVDRDLDVYRN KEYV+ E QKANE + KCLG+Y Y+ Sbjct: 119 TVYDQLMEGYPSEEDRNAIFKAYIEALKEDPEQYRADAQKLEEWARTQNANTLVDFSSKEGEIENIFKDIAQRAGTKDGFCYSRLFAVGLFRLLELANVTDPTILEKLCAALNVNKKSVDRDLDVYRNLLSKLVQAKELLKEYVE-REKKKRGERETQKANETVTKCLGDYQYA 291
BLAST of CV884615 vs. ExPASy Swiss-Prot
Match: THF1_ACAM1 (Protein thf1 OS=Acaryochloris marina (strain MBIC 11017) GN=thf1 PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 6.548e-16 Identity = 49/139 (35.25%), Postives = 81/139 (58.27%), Query Frame = -3 Query: 432 TVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEG-----EVEGILNDIAERASGKGNFSYSRFFAVGLFRLLELA--NATE-----PTVLEKLCAVLNVNKRSVDRDLDVYR 812 T +DR M+GY + D++AIF A A + DP Q + D Q+L E A+ ++A ++++ ++ E++ L +IA+ F YSR FA+GLF LLEL+ N T+ L +C VLN+++ + +DL++YR Sbjct: 58 TSFDRFMDGYQPENDKDAIFSAICKAQEADPVQMKKDGQRLTELAQSKSAQEMLDWITQAANSGGDELQWQLRNIAQNP----KFKYSRLFAIGLFTLLELSEGNITQDEESLAEFLPNICTVLNISESKLQKDLEIYR 192
BLAST of CV884615 vs. ExPASy Swiss-Prot
Match: THF1_TRIEI (Protein thf1 OS=Trichodesmium erythraeum (strain IMS101) GN=thf1 PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.905e-15 Identity = 49/135 (36.30%), Postives = 73/135 (54.07%), Query Frame = -3 Query: 435 TVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEF--PSKEGEVEGILNDIAERASGKGNFSYSRFFAVGLFRLLELANA-------TEPTVLEKLCAVLNVNKRSVDRDLDVY 812 T +DR M+GY ED+ +IF A I +EDP +YR DA+ LE+ A +AS ++ + SK + L D S F YSR FA+GLF LLE+ + L+K+C LN+ + + +D+D+Y Sbjct: 58 TAFDRFMQGYSPQEDKTSIFNALIQGQEEDPNKYRSDAKGLEDLAGKISASDILSWICLSKNIDNTQYLQDDLRAISENSKFRYSRLFAIGLFTLLEIVDTELIKEQEKRTEALKKICQSLNLVEEKLLKDIDLY 192
BLAST of CV884615 vs. ExPASy Swiss-Prot
Match: THF1_ANASP (Protein thf1 OS=Anabaena sp. (strain PCC 7120) GN=thf1 PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 4.244e-15 Identity = 45/137 (32.85%), Postives = 77/137 (56.20%), Query Frame = -3 Query: 429 TVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEV--EGILNDIAERASGKGNFSYSRFFAVGLFRLLELAN-------ATEPTVLEKLCAVLNVNKRSVDRDLDVYRN 812 T +DR MEGY + D+E+IF A A++++P++YR DA++L+ A+ + LV + S+ + + L + + NF YSR FA+GLF LLE +N L+ + A L+++ +DL++YR+ Sbjct: 58 TTFDRFMEGYQPERDKESIFSAICQAVEQEPQRYRQDAERLQAVAQSLPVNDLVAWLSQANHLQQDADLQAQLQAIANNSNFKYSRLFAIGLFTLLEQSNPDLVKDEKQRTEALKSIAAGLHLSDDKFSKDLELYRS 194
BLAST of CV884615 vs. ExPASy Swiss-Prot
Match: THF1_ANAVT (Protein thf1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=thf1 PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.613e-14 Identity = 44/137 (32.12%), Postives = 78/137 (56.93%), Query Frame = -3 Query: 429 TVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEV--EGILNDIAERASGKGNFSYSRFFAVGLFRLLELAN-------ATEPTVLEKLCAVLNVNKRSVDRDLDVYRN 812 T +DR M+GY + D+E+IF A A++++P++YR DA++L+ A+ + LV + S+ + + L + + NF YSR FA+GLF LLE +N L+ + A L+++ + +DL++YR+ Sbjct: 58 TTFDRFMQGYQPERDKESIFSAICQAVEQEPQRYRQDAERLKAVAQSLPVNDLVAWLSQANHLQQDADLQAQLQAIASNPNFKYSRLFAIGLFTLLEQSNPDLVKDEKQRTEALKTIAAGLHLSDDKLSKDLELYRS 194
BLAST of CV884615 vs. ExPASy Swiss-Prot
Match: THF1_NOSP7 (Protein thf1 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=thf1 PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.751e-14 Identity = 46/141 (32.62%), Postives = 81/141 (57.45%), Query Frame = -3 Query: 429 TVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLV------EFPSKEGEVEGILNDIAERASGKGNFSYSRFFAVGLFRLLELAN----ATEPTVLEKLCAV---LNVNKRSVDRDLDVYRN 812 T +DR M+GY + D+E+IF A A+++DP+ YR DA++L+ A+G L+ + ++ +++ L IA NF Y+R FA+G+F LLE ++ E + E L A+ L+V+ +++DL++YR+ Sbjct: 58 TTFDRFMQGYEPERDQESIFNALCRAIEQDPQHYRQDAERLQAIAKGLPVKDLIGWLGQTTYLDRDADLQAQLQAIANNP----NFKYNRLFAIGVFSLLEQSDPELVKDEKQLTEALKAIAAGLHVSDDKLNKDLELYRS 194
BLAST of CV884615 vs. ExPASy Swiss-Prot
Match: THF1_CYAP7 (Protein thf1 OS=Cyanothece sp. (strain PCC 7424) GN=thf1 PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 4.392e-12 Identity = 43/138 (31.16%), Postives = 76/138 (55.07%), Query Frame = -3 Query: 429 TVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGILNDIAERASGKGN---FSYSRFFAVGLFRLL-----ELANATE--PTVLEKLCAVLNVNKRSVDRDLDVYRN 812 T + R M+GY D D+E+IF A ++ DP+QYR DA+++ E A+ +A L+ + N I + G N + Y+R FA+G++ +L E+ TE V++++ VL++ + + +DLD+YR+ Sbjct: 58 TSFQRFMQGYRPDADKESIFNALCQSVGGDPQQYRQDAERMIESAKQLSAQQLLFNLESASDSSSGENQILQTLIGIANAPKYKYTRLFAIGIYTILAETDPEMLKNTEKREEVVKQIAKVLHLPEEKMQKDLDLYRS 195
BLAST of CV884615 vs. ExPASy Swiss-Prot
Match: THF1_CYAP4 (Protein thf1 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=thf1 PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 5.737e-12 Identity = 48/136 (35.29%), Postives = 73/136 (53.68%), Query Frame = -3 Query: 429 TVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGILNDIAERA-SGKGNFSYSRFFAVGLFRLLELA-------NATEPTVLEKLCAVLNVNKRSVDRDLDVYRN 812 T ++R M+GY D+ +IF A A + DP+Q + DAQ+L RGQ+ SL+++ S + G RA + F YSR FAVGLF LLE A A VL+++ V+++ + +DL+ YR+ Sbjct: 58 TTFERFMQGYHPPADQTSIFNAICLAQELDPQQVQQDAQELLGRVRGQSLESLLDWISTAASLGGDEQQNRLRAIASNPTFKYSRLFAVGLFTLLEQAEPELGKDEARLLQVLQQVGEVMHLPVEKMQKDLEQYRS 193 The following BLAST results are available for this feature:
BLAST of CV884615 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 11
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Sequences
The
following sequences are available for this feature:
EST sequence >CV884615 ID=CV884615; Name=CV884615; organism=Citrus sinensis; type=EST; length=814bpback to top |