CV884608

Overview
NameCV884608
Unique NameCV884608
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884608_ssr324 microsatellite CV884608_ssr324:324..335. BLAST: Citrus ESTs to Prunus persica proteins V1
CV884608_ssr343 microsatellite CV884608_ssr343:343..354. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12293 contig Csv1_Contig12293:39..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884608 vs. ExPASy Swiss-Prot
Match: EF1B2_ARATH (Elongation factor 1-beta 2 OS=Arabidopsis thaliana GN=At5g19510 PE=1 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.525e-60
Identity = 122/214 (57.01%), Postives = 143/214 (66.82%), Query Frame = 2
Query:   50 MAITFSDLHTESGLKSLDQYLSGKSYISGNQLTKDDIKVYAAVLVKPADSFPNASSWYDSVSSRLAPSFPGKAVGVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQ 691
            MA+TFSDLHTE G+KS++++L+GK+YISG+QL+ DD+KVYAAV VKP+D+FPNAS WY+SV+S+LA SFPGKAVGV+                                                            VL+DVKPWDDETDMKKLEEAVR VEMPGLFWGASKLVPVGYGIKKL IM TIVDDLVS D+LIE+ LT+EP NEYIQ
Sbjct:    1 MAVTFSDLHTEEGVKSVEEHLAGKTYISGDQLSVDDVKVYAAVPVKPSDAFPNASKWYESVASQLAKSFPGKAVGVQFGGSAAAAPAVEAEAPAAAADDDDDMDLFGDETEEEKKAAEEREAAKKDTKKPKESGKSSVLMDVKPWDDETDMKKLEEAVRGVEMPGLFWGASKLVPVGYGIKKLTIMFTIVDDLVSPDNLIEDFLTSEPNNEYIQ 214          
BLAST of CV884608 vs. ExPASy Swiss-Prot
Match: EF1B_ORYSJ (Elongation factor 1-beta OS=Oryza sativa subsp. japonica GN=Os07g0662500 PE=1 SV=3)

HSP 1 Score: 224.557 bits (571), Expect = 4.031e-58
Identity = 119/214 (55.61%), Postives = 137/214 (64.02%), Query Frame = 2
Query:   50 MAITFSDLHTESGLKSLDQYLSGKSYISGNQLTKDDIKVYAAVLVKPADSFPNASSWYDSVSSRLAPSFPGKAVGVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQ 691
            MA+TF+DLHT  GLK+L+Q+LSGK+Y+SGN ++KDDIKV+AAV  KP   FPNA+ WYD+V++ LA  FPGKAVGV                                                             VLLDVKPWDDETDMKKLEEAVRSV+M GL WGASKLVPVGYGIKKLQIM+TIVDDLVSVDSLIEEHLT EP NE++Q
Sbjct:    1 MAVTFTDLHTADGLKALEQHLSGKTYVSGNAISKDDIKVFAAVPSKPGAEFPNAARWYDTVAAALASRFPGKAVGVNLPGGGAASSAAAAAPAAKDADEDDDDLDLFGDETEEDKKAADERAASKASSKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQMEGLTWGASKLVPVGYGIKKLQIMLTIVDDLVSVDSLIEEHLTEEPINEFVQ 214          
BLAST of CV884608 vs. ExPASy Swiss-Prot
Match: EF1B1_ARATH (Elongation factor 1-beta 1 OS=Arabidopsis thaliana GN=At5g12110 PE=2 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 7.654e-33
Identity = 68/77 (88.31%), Postives = 74/77 (96.10%), Query Frame = 2
Query:  461 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQ 691
            VLL+VKPWDDETDMKKLEEAVRSV+MPGL WGASKLVPVGYGIKKL IM+TIVDDLVSVD+LIE+HLT+EP NEYIQ
Sbjct:  142 VLLEVKPWDDETDMKKLEEAVRSVQMPGLTWGASKLVPVGYGIKKLTIMMTIVDDLVSVDNLIEDHLTSEPNNEYIQ 218          

HSP 2 Score: 120.168 bits (300), Expect = 1.071e-26
Identity = 56/77 (72.73%), Postives = 67/77 (87.01%), Query Frame = 2
Query:   50 MAITFSDLHTESGLKSLDQYLSGKSYISGNQLTKDDIKVYAAVLVKPADSFPNASSWYDSVSSRLAPSFPGKAVGVR 280
            MA+TFSDLHTE GLK+L+++L+GK+YISG+QL+ DD+KVYAAVL  P D FPNAS WYDSV+S LA SFPGKA GVR
Sbjct:    1 MAVTFSDLHTERGLKTLEEHLAGKTYISGDQLSVDDVKVYAAVLENPGDGFPNASKWYDSVASHLAKSFPGKADGVR 77          
BLAST of CV884608 vs. ExPASy Swiss-Prot
Match: EF1D2_ARATH (Elongation factor 1-delta 2 OS=Arabidopsis thaliana GN=At2g18110 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.463e-32
Identity = 63/77 (81.82%), Postives = 71/77 (92.21%), Query Frame = 2
Query:  461 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQ 691
            VL+D+KPWDDETDMKKLEEAVRS++M GLFWGASKLVPVGYGIKKL IM TIVDDLVS+D++IEE LT EP NEY+Q
Sbjct:  145 VLMDIKPWDDETDMKKLEEAVRSIQMEGLFWGASKLVPVGYGIKKLHIMCTIVDDLVSIDTMIEEQLTVEPINEYVQ 221          
BLAST of CV884608 vs. ExPASy Swiss-Prot
Match: EF1D1_ARATH (Elongation factor 1-delta 1 OS=Arabidopsis thaliana GN=At1g30230 PE=2 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.105e-31
Identity = 62/77 (80.52%), Postives = 72/77 (93.51%), Query Frame = 2
Query:  461 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQ 691
            VL+D+KPWDDETDMKKLEEAV+S++M GLFWGASKLVPVGYGIKKLQI+ TIVDDLVS+D++IEE LT EP NEY+Q
Sbjct:  145 VLIDIKPWDDETDMKKLEEAVKSIQMEGLFWGASKLVPVGYGIKKLQILCTIVDDLVSIDTMIEEQLTVEPINEYVQ 221          
BLAST of CV884608 vs. ExPASy Swiss-Prot
Match: EF1D_PIMBR (Elongation factor 1-delta OS=Pimpinella brachycarpa PE=2 SV=3)

HSP 1 Score: 135.576 bits (340), Expect = 2.462e-31
Identity = 65/77 (84.42%), Postives = 71/77 (92.21%), Query Frame = 2
Query:  461 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQ 691
            VLLDVKPWDDETDM KLEEAVRS++M GL WGASKLV VGYGIKKLQIM+TIVDDLVSVD L+E++LTAEP NEYIQ
Sbjct:  140 VLLDVKPWDDETDMTKLEEAVRSIKMDGLLWGASKLVAVGYGIKKLQIMLTIVDDLVSVDDLVEDYLTAEPANEYIQ 216          

HSP 2 Score: 70.4774 bits (171), Expect = 9.728e-12
Identity = 32/65 (49.23%), Postives = 46/65 (70.77%), Query Frame = 2
Query:   50 MAITFSDLHTESGLKSLDQYLSGKSYISGNQLTKDDIKVYAAVLVKPADSFPNASSWYDSVSSRL 244
            MA+TF DL +E+GL+ LD+YL  +SYISG Q +KDD+ V+AA+   P+  + N S WY+ V + L
Sbjct:    1 MAVTFYDLSSEAGLEKLDEYLLSRSYISGYQASKDDLAVHAALAKPPSSKYVNVSRWYNHVEALL 65          
BLAST of CV884608 vs. ExPASy Swiss-Prot
Match: EF1D1_ORYSJ (Elongation factor 1-delta 1 OS=Oryza sativa subsp. japonica GN=Os07g0614500 PE=2 SV=3)

HSP 1 Score: 133.65 bits (335), Expect = 9.357e-31
Identity = 65/77 (84.42%), Postives = 70/77 (90.91%), Query Frame = 2
Query:  461 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQ 691
            VLLDVKPWDDETDM KLEEAVR+V+M GL WGASKLVPVGYGIKKLQIM+TIVDDLVSVDSLIE++   EP NEYIQ
Sbjct:  143 VLLDVKPWDDETDMTKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEYIQ 219          
BLAST of CV884608 vs. ExPASy Swiss-Prot
Match: EF1D2_ORYSJ (Elongation factor 1-delta 2 OS=Oryza sativa subsp. japonica GN=Os03g0406200 PE=2 SV=3)

HSP 1 Score: 132.109 bits (331), Expect = 2.722e-30
Identity = 64/77 (83.12%), Postives = 70/77 (90.91%), Query Frame = 2
Query:  461 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQ 691
            VLLDVKPWDDETDM KLEEAVR+V+M GL WGASKLVPVGYGIKKLQIM+TIVDDLVSVDSLIE++   EP NE+IQ
Sbjct:  140 VLLDVKPWDDETDMAKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEFIQ 216          

HSP 2 Score: 68.9366 bits (167), Expect = 2.830e-11
Identity = 32/68 (47.06%), Postives = 49/68 (72.06%), Query Frame = 2
Query:   50 MAITFSDLHTESGLKSLDQYLSGKSYISGNQLTKDDIKVYAAVLVKPADSFPNASSWYDSVSSRLAPS 253
            MAIT S++++E+GL+ LD+YL  +SYISG Q +KDD+ V+ ++   PA S+ N + WYD +S+ L  S
Sbjct:    1 MAITLSNVNSEAGLQKLDEYLLTRSYISGYQASKDDMTVFTSLPSAPAASYVNVTRWYDHISALLRSS 68          
BLAST of CV884608 vs. ExPASy Swiss-Prot
Match: EF1D_BETVU (Elongation factor 1-delta OS=Beta vulgaris PE=2 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 1.351e-29
Identity = 64/77 (83.12%), Postives = 70/77 (90.91%), Query Frame = 2
Query:  461 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQ 691
            VLLDVKPWDDETDMKKLEEAVRSV+  GL  GASKLVPVGYGIKKL IM+TIVDDLVSVD+LIE++LT EP NEY+Q
Sbjct:  145 VLLDVKPWDDETDMKKLEEAVRSVQQEGLTLGASKLVPVGYGIKKLTIMMTIVDDLVSVDNLIEDYLTVEPINEYVQ 221          
BLAST of CV884608 vs. ExPASy Swiss-Prot
Match: EF1B_WHEAT (Elongation factor 1-beta OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 4.068e-26
Identity = 58/77 (75.32%), Postives = 65/77 (84.42%), Query Frame = 2
Query:  461 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQ 691
            VL+D+KPWDDETDMKKLEEAVRSV+M GL WGASKL+PVGYGIKKLQIM+TI+DDL S    IEE L   P NEY+Q
Sbjct:  132 VLMDIKPWDDETDMKKLEEAVRSVQMEGLTWGASKLMPVGYGIKKLQIMLTIIDDLASTP--IEEVLCEAPINEYVQ 206          

HSP 2 Score: 102.449 bits (254), Expect = 2.310e-21
Identity = 45/76 (59.21%), Postives = 64/76 (84.21%), Query Frame = 2
Query:   50 MAITFSDLHTESGLKSLDQYLSGKSYISGNQLTKDDIKVYAAVLVKPADSFPNASSWYDSVSSRLAPSFPGKAVGV 277
            MA+TFSDLHT  GLK+L+ +L+GK+YISG+ +TKDD+KV+AAV +KP+  FPNA+ WYD+V++ ++  FPG+A GV
Sbjct:    1 MAVTFSDLHTADGLKALEAHLAGKTYISGDGITKDDVKVFAAVPLKPSAEFPNAARWYDTVAAAVSSRFPGQASGV 76          
The following BLAST results are available for this feature:
BLAST of CV884608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
EF1B2_ARATH2.525e-6057.01Elongation factor 1-beta 2 OS=Arabidopsis thaliana... [more]
EF1B_ORYSJ4.031e-5855.61Elongation factor 1-beta OS=Oryza sativa subsp. ja... [more]
EF1B1_ARATH7.654e-3388.31Elongation factor 1-beta 1 OS=Arabidopsis thaliana... [more]
EF1D2_ARATH8.463e-3281.82Elongation factor 1-delta 2 OS=Arabidopsis thalian... [more]
EF1D1_ARATH1.105e-3180.52Elongation factor 1-delta 1 OS=Arabidopsis thalian... [more]
EF1D_PIMBR2.462e-3184.42Elongation factor 1-delta OS=Pimpinella brachycarp... [more]
EF1D1_ORYSJ9.357e-3184.42Elongation factor 1-delta 1 OS=Oryza sativa subsp.... [more]
EF1D2_ORYSJ2.722e-3083.12Elongation factor 1-delta 2 OS=Oryza sativa subsp.... [more]
EF1D_BETVU1.351e-2983.12Elongation factor 1-delta OS=Beta vulgaris PE=2 SV... [more]
EF1B_WHEAT4.068e-2675.32Elongation factor 1-beta OS=Triticum aestivum PE=1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008E04_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T3_E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884608 ID=CV884608; Name=CV884608; organism=Citrus sinensis; type=EST; length=691bp
GTTGAAGTTGTGCGTCTCTTCTTGCCTCTGCCTTGATTTGAAGACCAAAA
TGGCCATCACTTTTTCGGATCTCCACACAGAGTCAGGCCTTAAGTCTCTC
GATCAGTATCTTTCTGGGAAATCTTATATCTCCGGTAATCAACTGACAAA
AGATGACATCAAGGTCTACGCTGCCGTTTTGGTGAAACCTGCTGATTCTT
TCCCCAACGCCAGCAGCTGGTACGACAGCGTTTCTTCACGTCTCGCCCCA
AGCTTCCCTGGCAAAGCCGTTGGTGTGAGAGTTGATGGCAAAGGTGCTCC
AGTTGACGCCGCCGCAGCCAAGCCTGCTGCTGCTGGAGGTGGTGATGATG
ATGATTTGGATCTCTTTGGAGATGAGACTGAGGAGGATAAGAAAGCAGCA
GAGGAGAGGGAGGCTGCTAAAAAGCAATCATCCAAGAAGAAAGAGAGTGG
AAAATCATCGGTACTTTTGGATGTAAAGCCTTGGGATGACGAGACAGACA
TGAAAAAGCTAGAAGAGGCAGTTAGGAGTGTTGAGATGCCGGGTCTCTTT
TGGGGAGCATCAAAATTGGTCCCAGTCGGTTATGGGATTAAGAAGCTGCA
AATCATGATTACAATCGTTGACGATCTTGTTTCTGTGGATTCACTGATAG
AGGAACACCTCACAGCTGAGCCCTGCAATGAGTATATTCAG
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