CV884604

Overview
NameCV884604
Unique NameCV884604
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length500
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884604_ssr5 microsatellite CV884604_ssr5:5..16. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13673 contig Csv1_Contig13673:62..561. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884604 vs. ExPASy Swiss-Prot
Match: ISCU_HUMAN (Iron-sulfur cluster assembly enzyme ISCU, mitochondrial OS=Homo sapiens GN=ISCU PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.684e-28
Identity = 61/86 (70.93%), Postives = 72/86 (83.72%), Query Frame = -3
Query:  241 EETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRTKPSAASE 498
            +E G+IVDA FKTFGCGSAIASSS+ATEWVKGK ++E L+IKNT+IAK L LPPVKLHCSMLAEDAIKAA+ DY+ K+      +E
Sbjct:   80 DEKGKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKAALADYKLKQEPKKGEAE 165          
BLAST of CV884604 vs. ExPASy Swiss-Prot
Match: ISCU_MOUSE (Iron-sulfur cluster assembly enzyme ISCU, mitochondrial OS=Mus musculus GN=Iscu PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.200e-28
Identity = 61/88 (69.32%), Postives = 72/88 (81.82%), Query Frame = -3
Query:  235 EETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRTKPSAASEAE 498
            +E G+IVDA FKTFGCGSAIASSS+ATEWVKGK ++E L+IKNT+IAK L LPPVKLHCSMLAEDAIKAA+ DY+ K+       E +
Sbjct:   81 DEKGKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKAALADYKLKQESKKEEPEKQ 168          
BLAST of CV884604 vs. ExPASy Swiss-Prot
Match: ISU1_DEBHA (Iron sulfur cluster assembly protein 1, mitochondrial OS=Debaryomyces hansenii GN=ISU1 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.207e-26
Identity = 62/89 (69.66%), Postives = 71/89 (79.78%), Query Frame = -3
Query:  238 EETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRT--KPSAASEA 498
            +ETG I D  FKTFGCGSAIASSS  TE VKGK ++E + IKNT IAK LSLPPVKLHCSMLAEDAIK+AVKDY +KR+  +P+   EA
Sbjct:   83 DETGVIKDVKFKTFGCGSAIASSSYLTELVKGKTIEEAVKIKNTAIAKELSLPPVKLHCSMLAEDAIKSAVKDYRSKRSVKQPTLGPEA 171          
BLAST of CV884604 vs. ExPASy Swiss-Prot
Match: NIFU_RICPR (NifU-like protein OS=Rickettsia prowazekii GN=nifU PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 5.991e-26
Identity = 55/73 (75.34%), Postives = 63/73 (86.30%), Query Frame = -3
Query:  265 IVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 483
            I DA FKTFGCGSAIASSS+ TEW+KGK +++   IKNTEIAK LSLPPVKLHCS+LAEDAIKAA+ DY+ KR
Sbjct:   53 ITDAKFKTFGCGSAIASSSLVTEWIKGKSVEDAKEIKNTEIAKELSLPPVKLHCSLLAEDAIKAAIADYKQKR 125          
BLAST of CV884604 vs. ExPASy Swiss-Prot
Match: ISU1_KLULA (Iron sulfur cluster assembly protein 1, mitochondrial OS=Kluyveromyces lactis GN=ISU1 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 5.991e-26
Identity = 57/78 (73.08%), Postives = 66/78 (84.62%), Query Frame = -3
Query:  265 EETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 498
            +ETG I +  FKTFGCGSAIASSS  TE V+GK +++   IKNTEIA+ LSLPPVKLHCSMLAEDAIKAA+KDY+AKR
Sbjct:   97 DETGVIENVKFKTFGCGSAIASSSYMTELVRGKTLEDAAKIKNTEIARELSLPPVKLHCSMLAEDAIKAAIKDYQAKR 174          
BLAST of CV884604 vs. ExPASy Swiss-Prot
Match: NIFU_BUCAP (NifU-like protein OS=Buchnera aphidicola subsp. Schizaphis graminum GN=nifU PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 7.824e-26
Identity = 53/79 (67.09%), Postives = 65/79 (82.28%), Query Frame = -3
Query:  259 ETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRTK 495
            E G I DACFKT+GCGSAIASSS+ TEW+KGK + E  +IKNT I + L LPPVK+HCS+LAEDAIKAA+ DY++K+ K
Sbjct:   49 EQGIIEDACFKTYGCGSAIASSSLVTEWIKGKSITEAEAIKNTSIVEELELPPVKIHCSILAEDAIKAAISDYKSKKNK 127          
BLAST of CV884604 vs. ExPASy Swiss-Prot
Match: ISU1_YEAST (Iron sulfur cluster assembly protein 1, mitochondrial OS=Saccharomyces cerevisiae GN=ISU1 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 7.824e-26
Identity = 58/85 (68.24%), Postives = 66/85 (77.65%), Query Frame = -3
Query:  244 EETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRTKPSAAS 498
            + TG I D  FKTFGCGSAIASSS  TE V+G  + +   IKNTEIAK LSLPPVKLHCSMLAEDAIKAA+KDY++KR  P+  S
Sbjct:   81 DSTGVIEDVKFKTFGCGSAIASSSYMTELVQGMTLDDAAKIKNTEIAKELSLPPVKLHCSMLAEDAIKAAIKDYKSKRNTPTMLS 165          
BLAST of CV884604 vs. ExPASy Swiss-Prot
Match: NIFU_BUCAI (NifU-like protein OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=nifU PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.022e-25
Identity = 54/77 (70.13%), Postives = 64/77 (83.12%), Query Frame = -3
Query:  265 ETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 495
            E G I DACFKT+GCGSAIASSS+ TEWVKGK ++E  SIKNT I + L LPPVK+HCS+LAEDAIKAA+ DY+ K+
Sbjct:   49 EKGIIEDACFKTYGCGSAIASSSLVTEWVKGKSIEEAESIKNTTIVEELDLPPVKIHCSILAEDAIKAAISDYKRKK 125          
BLAST of CV884604 vs. ExPASy Swiss-Prot
Match: NIFU_SHIFL (NifU-like protein OS=Shigella flexneri GN=nifU PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 6.623e-25
Identity = 53/77 (68.83%), Postives = 65/77 (84.42%), Query Frame = -3
Query:  265 ETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 495
            + G I DA FKT+GCGSAIASSS+ TEWVKGK + E  +IKNT+IA+ L LPPVK+HCS+LAEDAIKAA+ DY++KR
Sbjct:   49 DEGIIEDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADYKSKR 125          
BLAST of CV884604 vs. ExPASy Swiss-Prot
Match: NIFU_ECOLI (NifU-like protein OS=Escherichia coli (strain K12) GN=nifU PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 6.623e-25
Identity = 53/77 (68.83%), Postives = 65/77 (84.42%), Query Frame = -3
Query:  265 ETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 495
            + G I DA FKT+GCGSAIASSS+ TEWVKGK + E  +IKNT+IA+ L LPPVK+HCS+LAEDAIKAA+ DY++KR
Sbjct:   49 DEGIIEDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADYKSKR 125          
The following BLAST results are available for this feature:
BLAST of CV884604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
ISCU_HUMAN1.684e-2870.93Iron-sulfur cluster assembly enzyme ISCU, mitochon... [more]
ISCU_MOUSE2.200e-2869.32Iron-sulfur cluster assembly enzyme ISCU, mitochon... [more]
ISU1_DEBHA1.207e-2669.66Iron sulfur cluster assembly protein 1, mitochondr... [more]
NIFU_RICPR5.991e-2675.34NifU-like protein OS=Rickettsia prowazekii GN=nifU... [more]
ISU1_KLULA5.991e-2673.08Iron sulfur cluster assembly protein 1, mitochondr... [more]
NIFU_BUCAP7.824e-2667.09NifU-like protein OS=Buchnera aphidicola subsp. Sc... [more]
ISU1_YEAST7.824e-2668.24Iron sulfur cluster assembly protein 1, mitochondr... [more]
NIFU_BUCAI1.022e-2570.13NifU-like protein OS=Buchnera aphidicola subsp. Ac... [more]
NIFU_SHIFL6.623e-2568.83NifU-like protein OS=Shigella flexneri GN=nifU PE=... [more]
NIFU_ECOLI6.623e-2568.83NifU-like protein OS=Escherichia coli (strain K12)... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_008E02_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T3_E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884604 ID=CV884604; Name=CV884604; organism=Citrus sinensis; type=EST; length=500bp
ATATTTCATTCATTCAGTTACACAAGTACAATTACTTATGTGCAAAACTG
CAGGTCCTTGGATCATTATTCATACACAGTTCTTACTAATAACCATAAAC
TTTACCCCCTCCACCACCCGACATCAATCTTTAGGAGGTGCAGTTATCCT
GATACATCTCCACAGGCAGAACATTAACATCATTTTCAAATGTTTACATC
AATATCTTCAAACATCAGCAGCCCTTGGAGGTAGTTCTGCCTCTGAAGCA
GCACTTGGTTTGGTACGTTTAGCTTCGTAATCTTTTACAGCAGCCTTGAT
AGCATCTTCAGCAAGCATGCTGCAATGCAGTTTAACAGGTGGTAGAGAAA
GATGTTTTGCAATTTCCGTGTTTTTAATGGACAAGACTTCCTGCATCTGC
TTCCCTTTCACCCATTCCGTTGCAACAGAAGATGAAGCGATGGCCGAGCC
ACAGCCAAAGGTCTTGAAGCAGGCGTCGACGATCTGACCAGTCTCTTCAT
back to top