CV884601

Overview
NameCV884601
Unique NameCV884601
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length894
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3790 contig Csv1_Contig3790:16..910. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884601 vs. ExPASy Swiss-Prot
Match: CP20C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-3, chloroplastic OS=Arabidopsis thaliana GN=CYP20-3 PE=1 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 1.905e-75
Identity = 149/219 (68.04%), Postives = 165/219 (75.34%), Query Frame = 3
Query:  246 SGRALTSRSHYASSFPIVQLSKA-PSVKYRRMFCVNSMAKD----VELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSKTDYPKVPCRIINSGELPLDA 887
            SG AL+SR HYAS  PI Q S    + K++R  CV SMA +    +E QAKVT KV+FDV+IGG+ AGRIVMGLFG+VVPKT ENFRALCTGEK YGYKG SFHRIIKDFMIQ            ISIYG+ FEDE+F LKH GPG+LSMANAGPNTNGSQFFICTVKT WLDN+HVVFG VI+GM +VR LES ET   D PK  CRI   GELPLDA
Sbjct:   44 SGIALSSRLHYAS--PIKQFSGVYATTKHQRTACVKSMAAEEEEVIEPQAKVTNKVYFDVEIGGEVAGRIVMGLFGEVVPKTVENFRALCTGEKKYGYKGSSFHRIIKDFMIQGGDFTEGNGTGGISIYGAKFEDENFTLKHTGPGILSMANAGPNTNGSQFFICTVKTSWLDNKHVVFGQVIEGMKLVRTLESQETRAFDVPKKGCRIYACGELPLDA 260          
BLAST of CV884601 vs. ExPASy Swiss-Prot
Match: CYPB_VICFA (Peptidyl-prolyl cis-trans isomerase, chloroplastic OS=Vicia faba PE=1 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 1.235e-74
Identity = 141/211 (66.82%), Postives = 162/211 (76.78%), Query Frame = 3
Query:  258 LTSRSHYASSFPIVQLSKAPSVKYRRMFCVNSMAKDV-ELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSKTD-YPKVPCRIINSGELPLD 884
            L+S  HYA    + Q SKA S+  RR+ C +    +V ELQAKVT+K+FFD++IGG+ AGRIV+GLFGD VPKT ENF+ L TG KGYGY+G  FHRII +FMIQ            +SIYGS FEDESF LKHVGPGVLSMANAGPNTNGSQFFICTV TPWLDNRHVVFGHVI+G+DVV++LES ETSK D  PK PC+I  SGELPLD
Sbjct:   37 LSSTYHYAPRLSVSQQSKAKSITSRRITCASGAQGEVAELQAKVTSKIFFDIEIGGESAGRIVIGLFGDAVPKTVENFKTLSTGAKGYGYQGSFFHRIIPNFMIQGGDFTEGNGTGGVSIYGSKFEDESFDLKHVGPGVLSMANAGPNTNGSQFFICTVPTPWLDNRHVVFGHVIEGLDVVKQLESQETSKLDNSPKKPCKIAKSGELPLD 247          
BLAST of CV884601 vs. ExPASy Swiss-Prot
Match: CP20B_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-2, chloroplastic OS=Arabidopsis thaliana GN=CYP20-2 PE=1 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 3.265e-59
Identity = 127/256 (49.61%), Postives = 164/256 (64.06%), Query Frame = 3
Query:  177 MLPMTSSITNSQSGHCPASTLK-LSGRALTSRSH------------YASSFPIVQLSKAPSVKY----RRMFCVNSMAKDV-ELQAKVTTKVFFDVDIG---GKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSKTDYPKVPCRIINSGELPL 881
            M  ++ +++N +S   P   L  ++  A TS S             ++SS P    S      Y     R F V S A+ V E Q+K+T KV+FD+ +G   GK AGRIV+GL+GD VP+T ENFRALCTGEKG+GYKG +FHR+I+DFMIQ             S+YG +F+DE+F L HVGPGVLSMANAGPNTNGSQFFICT+KT WLD RHVVFG VI+GM+VV+ +E  ET + D P+    I + G+LP+
Sbjct:    1 MATLSMTLSNPKSLSAPPRRLSPINTSAFTSTSFRLRTKSSFDSISFSSSTPFSASSLLLHTSYTKRNHRCFSVQSNAEVVTEPQSKITHKVYFDISVGNPVGKLAGRIVIGLYGDDVPQTVENFRALCTGEKGFGYKGSTFHRVIRDFMIQGGDFEKGNGTGGKSVYGRTFKDENFKLSHVGPGVLSMANAGPNTNGSQFFICTIKTSWLDGRHVVFGQVIEGMEVVKLIEEQETDRGDRPRKKVVIADCGQLPM 256          
BLAST of CV884601 vs. ExPASy Swiss-Prot
Match: PPIB_CRYNE (Peptidyl-prolyl cis-trans isomerase B OS=Cryptococcus neoformans GN=CPR2 PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 3.610e-58
Identity = 112/173 (64.74%), Postives = 130/173 (75.14%), Query Frame = 3
Query:  384 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEK------GYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSKTDYPKVPCRIINSGELPLD 884
            +T KV+FD++ GGKP GRIVMGL+G  VPKTAENFRAL TG+       GYGY+G SFHRIIK+FMIQ             SIYGS F DE+F LKH GPGVLSMANAG +TNGSQFFICTVKT WLDNRHVVFGHV++GMDVV  +E+V+TS+ D P  P  I  SGELP++
Sbjct:   43 ITNKVYFDIEHGGKPLGRIVMGLYGKTVPKTAENFRALATGKNSDGEDLGYGYEGSSFHRIIKNFMIQGGDFTKGDGTGGKSIYGSKFPDENFKLKHTGPGVLSMANAGRDTNGSQFFICTVKTAWLDNRHVVFGHVLEGMDVVYAMENVKTSRGDKPVEPITIAASGELPIE 215          
BLAST of CV884601 vs. ExPASy Swiss-Prot
Match: PPIB_ORPSP (Peptidyl-prolyl cis-trans isomerase B OS=Orpinomyces sp. (strain PC-2) GN=CYPB PE=1 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 2.677e-53
Identity = 103/167 (61.68%), Postives = 119/167 (71.26%), Query Frame = 3
Query:  381 KVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSKTDYPKVPCRIINSGELPL 881
            KVT KV+FD+  G K  GRIV+GL+G+VVPKT ENFRAL TGEKGYGYK   FHR+IKDFMIQ             SIYG  F DE+F L+H GPG+LSMANAG +TNGSQFFI TV T WLD RHVVFG VI+GMDVV  +E+ +T   D P  P  I + GELP+
Sbjct:   27 KVTNKVYFDIKQGDKDLGRIVLGLYGEVVPKTVENFRALATGEKGYGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFADENFKLRHTGPGILSMANAGRDTNGSQFFITTVTTSWLDGRHVVFGKVIEGMDVVTAIETTKTLPGDRPATPVIIADCGELPV 193          
BLAST of CV884601 vs. ExPASy Swiss-Prot
Match: PPIF_HUMAN (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Homo sapiens GN=PPIF PE=1 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.866e-52
Identity = 97/139 (69.78%), Postives = 109/139 (78.42%), Query Frame = 3
Query:  396 VFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLES 812
            V+ DVD  GKP GR+V+ L  DVVPKTAENFRALCTGEKG+GYKG +FHR+I  FM Q             SIYGS F DE+F LKHVGPGVLSMANAGPNTNGSQFFICT+KT WLD +HVVFGHV +GMDVV+K+ES
Sbjct:   48 VYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIES 186          
BLAST of CV884601 vs. ExPASy Swiss-Prot
Match: PPIB_MOUSE (Peptidyl-prolyl cis-trans isomerase B OS=Mus musculus GN=Ppib PE=2 SV=2)

HSP 1 Score: 204.912 bits (520), Expect = 5.049e-52
Identity = 101/178 (56.74%), Postives = 124/178 (69.66%), Query Frame = 3
Query:  351 SMAKDVELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSKTDYPKVPCRIINSGELPLD 884
            S+A D +   KVT KV+FD+ IG +  GR+V GLFG  VPKT +NF AL TGEKG+GYK   FHR+IKDFMIQ             SIYG  F DE+F LKH GPG +SMANAG +TNGSQFFI TVKT WLD +HVVFG V++GMDVVRK+ES +T   D P     I++SG++ ++
Sbjct:   31 SVANDKKKGPKVTVKVYFDLQIGDESVGRVVFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVLEGMDVVRKVESTKTDSRDKPLKDVIIVDSGKIEVE 208          
BLAST of CV884601 vs. ExPASy Swiss-Prot
Match: PPIB_ASPNG (Peptidyl-prolyl cis-trans isomerase B OS=Aspergillus niger GN=cypB PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 5.049e-52
Identity = 96/165 (58.18%), Postives = 122/165 (73.94%), Query Frame = 3
Query:  381 KVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSKTDYPKVPCRIINSGEL 875
            K+T+KVFFD++ G KP GR+V+GL+G  VPKTAENFRAL TGEKG+GY+G +FHR+IKDFMIQ             SIYG  F DE+F L+H   G+LSMANAG +TNGSQFFI TV TPWLD RHVVFG V++G ++V ++E+V   ++D P    +I+ SGEL
Sbjct:   32 KITSKVFFDIEHGDKPLGRVVLGLYGKTVPKTAENFRALATGEKGFGYEGSTFHRVIKDFMIQGGDFTRGDGTGGKSIYGEKFADENFKLRHTRKGLLSMANAGKDTNGSQFFITTVPTPWLDGRHVVFGEVLEGYEIVAQIENVPKGRSDRPVETVKIVKSGEL 196          
BLAST of CV884601 vs. ExPASy Swiss-Prot
Match: PPIC_HUMAN (Peptidyl-prolyl cis-trans isomerase C OS=Homo sapiens GN=PPIC PE=1 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 1.125e-51
Identity = 103/164 (62.80%), Postives = 114/164 (69.51%), Query Frame = 3
Query:  384 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSKTDYPKVPCRIINSGEL 875
            VT KVFFDV IG K  GRIV+GLFG VVPKT ENF AL TGEKGYGYKG  FHR+IKDFMIQ            +SIYG +F DE+F LKH G G +SMANAGP+TNGSQFFI   K  WLD +HVVFG VIDGM VV  +E   T   D P   C IINSG++
Sbjct:   36 VTAKVFFDVRIGDKDVGRIVIGLFGKVVPKTVENFVALATGEKGYGYKGSKFHRVIKDFMIQGGDITTGDGTGGVSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVIDGMTVVHSIELQATDGHDRPLTNCSIINSGKI 199          
BLAST of CV884601 vs. ExPASy Swiss-Prot
Match: CP20A_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Arabidopsis thaliana GN=CYP20-1 PE=1 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.469e-51
Identity = 109/181 (60.22%), Postives = 124/181 (68.51%), Query Frame = 3
Query:  360 KDVELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG-------YKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSKTDYPKVPCRIINSGELPL 881
            K  E   ++T KV+FDV+I GK AGRIVMGLFG  VPKT ENFRALCTGEKG G       YKG SFHRII  FM+Q             SIYG  F DE+F LKH GPG LSMANAG +TNGSQFFI TV T WLD RHVVFG V+ GMDVV K+E+ E +++  PK    I++SGELPL
Sbjct:   25 KSKENLKEITHKVYFDVEIDGKAAGRIVMGLFGKTVPKTVENFRALCTGEKGIGKNGKALHYKGSSFHRIIPSFMLQGGDFTHGNGMGGESIYGEKFADENFKLKHTGPGFLSMANAGQDTNGSQFFITTVTTSWLDGRHVVFGKVVTGMDVVYKVEA-EGNQSGTPKSKVVIVDSGELPL 204          
The following BLAST results are available for this feature:
BLAST of CV884601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 234
Match NameE-valueIdentityDescription
CP20C_ARATH1.905e-7568.04Peptidyl-prolyl cis-trans isomerase CYP20-3, chlor... [more]
CYPB_VICFA1.235e-7466.82Peptidyl-prolyl cis-trans isomerase, chloroplastic... [more]
CP20B_ARATH3.265e-5949.61Peptidyl-prolyl cis-trans isomerase CYP20-2, chlor... [more]
PPIB_CRYNE3.610e-5864.74Peptidyl-prolyl cis-trans isomerase B OS=Cryptococ... [more]
PPIB_ORPSP2.677e-5361.68Peptidyl-prolyl cis-trans isomerase B OS=Orpinomyc... [more]
PPIF_HUMAN3.866e-5269.78Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIB_MOUSE5.049e-5256.74Peptidyl-prolyl cis-trans isomerase B OS=Mus muscu... [more]
PPIB_ASPNG5.049e-5258.18Peptidyl-prolyl cis-trans isomerase B OS=Aspergill... [more]
PPIC_HUMAN1.125e-5162.80Peptidyl-prolyl cis-trans isomerase C OS=Homo sapi... [more]
CP20A_ARATH1.469e-5160.22Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008D12_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T7_D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884601 ID=CV884601; Name=CV884601; organism=Citrus sinensis; type=EST; length=894bp
ACCTAAAGAAGCTTCTTATTAGTTATCACTGGCTGCAGGCTCCAGCTGCG
GCGAATTTGGGCGACCCCTATTACCTAATCCATTGTTATGGCTTCTACTG
TCTCTACTCAGATGCGGCTACATAGCCCCGCCCTCATTTTCCAGGGCAGT
TATAGCCAAGGTGTTGCAATGTTTGTATGCTACCTATGACGTCTAGCATT
ACAAATTCGCAGTCAGGTCATTGCCCAGCTTCTACTTTGAAGTTGTCTGG
AAGAGCATTGACATCAAGATCCCACTATGCATCAAGCTTTCCCATCGTAC
AGCTTTCTAAAGCACCTTCTGTTAAGTATCGAAGAATGTTCTGTGTCAAC
TCAATGGCAAAGGATGTAGAGCTGCAAGCAAAAGTGACAACCAAAGTTTT
CTTTGACGTAGATATTGGAGGTAAACCTGCAGGTAGAATAGTAATGGGCC
TTTTTGGAGATGTTGTTCCGAAAACAGCTGAGAACTTTCGTGCACTGTGT
ACAGGTGAGAAAGGATATGGTTACAAAGGATGCTCCTTCCACCGTATTAT
TAAAGATTTTATGATCCAGGGAGGGGACTTCACTGAGGGAGATGGAACTG
GAGGCATCAGTATTTATGGTTCCAGCTTTGAAGATGAGAGCTTTGTCTTG
AAGCATGTTGGACCTGGAGTATTAAGCATGGCCAATGCAGGTCCTAATAC
CAATGGGAGCCAATTTTTCATTTGCACAGTGAAGACACCATGGTTGGACA
ACCGCCATGTTGTGTTTGGACATGTCATTGATGGAATGGACGTTGTGAGG
AAACTTGAATCTGTAGAGACAAGCAAGACAGATTACCCAAAGGTGCCATG
TAGAATTATCAATAGTGGAGAACTACCATTAGATGCCTGATCTG
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