CV884600

Overview
NameCV884600
Unique NameCV884600
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884600_ssr72 microsatellite CV884600_ssr72:72..89. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CV884600 vs. ExPASy Swiss-Prot
Match: SLX1_MOUSE (Structure-specific endonuclease subunit SLX1 OS=Mus musculus GN=Giyd1 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.062e-24
Identity = 56/116 (48.28%), Postives = 72/116 (62.07%), Query Frame = 3
Query:  117 FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHN-GEIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRRAAATFKSFSGVANKIKLAYTMLNLPNWERYAL 461
            FF  YLL    PR +G  Y+GFTVNP RR+RQHN G  + GA RT  R PW+MVL I+GFP+ V+AL+FEWAWQHP  S  +       +S +  A  +++   ML +P W R  L
Sbjct:   10 FFGVYLLYCQNPRHRGRVYVGFTVNPARRVRQHNAGRKKGGAWRTSGRGPWDMVLIIHGFPSAVAALRFEWAWQHPQASRRLTHVGPRLRSEAAFAFHLRVLAHMLRVPPWVRLPL 125          
BLAST of CV884600 vs. ExPASy Swiss-Prot
Match: SLX1_NEMVE (Structure-specific endonuclease subunit SLX1 homolog OS=Nematostella vectensis GN=v1g174298 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.090e-24
Identity = 57/131 (43.51%), Postives = 81/131 (61.83%), Query Frame = 3
Query:  114 GFFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEI-RCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRRAAATFKSFS-GVANKIKLAYTMLNLPNWERYALVNLVLFNQWSVRQ 500
            GF   YLL  + P+FKGHTYIG+TVNP RRI+QHNG + + GA +T +++PW M+L ++GFP ++ ALQFEWAWQ P  S  ++ AA   K     V    ++   +L +  W R     L L  +W +R+
Sbjct:    9 GFHGVYLLYCVNPKFKGHTYIGYTVNPNRRIKQHNGGVDKGGAYKTSRKKPWNMILIVHGFPNDIIALQFEWAWQKPTVSRRLKSAATKKKPRERPVQYCFRILSELLRVGPWNR-----LPLHIRWLMRE 134          
BLAST of CV884600 vs. ExPASy Swiss-Prot
Match: SLX1_HUMAN (Structure-specific endonuclease subunit SLX1 OS=Homo sapiens GN=GIYD1 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.090e-24
Identity = 54/116 (46.55%), Postives = 72/116 (62.07%), Query Frame = 3
Query:  117 FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNG-EIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRRAAATFKSFSGVANKIKLAYTMLNLPNWERYAL 461
            FF  YLL  L PR++G  Y+GFTVN  RR++QHNG   + GA RT  R PWEMVL ++GFP++V+AL+FEWAWQHP  S  +       +  +  A  +++   ML  P W R  L
Sbjct:   13 FFGVYLLYCLNPRYRGRVYVGFTVNTARRVQQHNGGRKKGGAWRTSGRGPWEMVLVVHGFPSSVAALRFEWAWQHPHASRRLAHVGPRLRGETAFAFHLRVLAHMLRAPPWARLPL 128          
BLAST of CV884600 vs. ExPASy Swiss-Prot
Match: SLX1_BOVIN (Structure-specific endonuclease subunit SLX1 OS=Bos taurus GN=GIYD1 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.090e-24
Identity = 55/116 (47.41%), Postives = 71/116 (61.21%), Query Frame = 3
Query:  117 FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNG-EIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRRAAATFKSFSGVANKIKLAYTMLNLPNWERYAL 461
            FF  YLL  L PR +G  Y+GFTVNP RR++QHNG   + GA RT  R PWEMVL ++GFP+ V+AL+FEWAWQHP  S  +       +  +  A  +++   ML  P W R  L
Sbjct:    6 FFGVYLLYCLNPRHRGRVYVGFTVNPARRVQQHNGGRKKGGAWRTSGRGPWEMVLIVHGFPSAVAALRFEWAWQHPQASRRLTHVGRRLRGEATFAFHLRVLAHMLRAPPWVRLPL 121          
BLAST of CV884600 vs. ExPASy Swiss-Prot
Match: SLX1_RAT (Structure-specific endonuclease subunit SLX1 OS=Rattus norvegicus GN=Giyd1 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.270e-24
Identity = 54/116 (46.55%), Postives = 71/116 (61.21%), Query Frame = 3
Query:  117 FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHN-GEIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRRAAATFKSFSGVANKIKLAYTMLNLPNWERYAL 461
            FF  YLL    PR +G  Y+GFTVNP RR+RQHN G  + GA RT  R PW+MVL ++GFP+ V+AL+FEWAWQHP  S  +       +S +     +++   ML +P W R  L
Sbjct:   10 FFGVYLLYCQNPRHRGRVYVGFTVNPARRVRQHNAGRKKGGAWRTSGRGPWDMVLILHGFPSAVAALRFEWAWQHPQASRRLTHVGPRLRSEASFTFHLRVLAHMLRVPPWVRLPL 125          
BLAST of CV884600 vs. ExPASy Swiss-Prot
Match: SLX1_XENLA (Structure-specific endonuclease subunit slx1 OS=Xenopus laevis GN=giyd1 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.827e-23
Identity = 53/118 (44.92%), Postives = 72/118 (61.02%), Query Frame = 3
Query:  111 KGFFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNG-EIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRRAAATFKSFSGVANKIKLAYTMLNLPNWERYAL 461
            +GF+  YLL    P++KG  YIGFTVNP RRI+QHNG + + GA +T  R PW+MVL ++GFP +++AL+FEWAWQHP  S  +       K  S     + +   ML +  W R  L
Sbjct:    6 EGFYGVYLLFCTNPKYKGRIYIGFTVNPERRIQQHNGGKHKGGAWKTSGRGPWDMVLIVHGFPNDIAALRFEWAWQHPHVSRRLTHVPRKTKKQSSFDFHLLVLCHMLRVAPWNRLPL 123          
BLAST of CV884600 vs. ExPASy Swiss-Prot
Match: SLX1_ANOGA (Structure-specific endonuclease subunit SLX1 homolog OS=Anopheles gambiae GN=AGAP002259 PE=3 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 3.777e-22
Identity = 56/127 (44.09%), Postives = 75/127 (59.06%), Query Frame = 3
Query:  102 DQRKGFFACYLLTSLCP--RFKGHTYIGFTVNPRRRIRQHN-GEIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRRAAATFKSFSGVAN---KIKLAYTMLNLPNWERYALV 464
            ++ + F+  YLL S  P  +F G TYIG+TV+P RRI+QHN GE   GA RT  R PW MVL ++GFP N+SAL+FEWAWQ P  S  +++     K     +N     ++   ML +  W R  LV
Sbjct:    5 EEIEDFYGVYLLVSKSPNPKFAGRTYIGYTVDPNRRIKQHNRGEDAGGARRTSNRGPWTMVLIVHGFPNNISALRFEWAWQQPRVSRRLKQMPELQKKLRKESNFEYNFRILTEMLRMGPWNRLPLV 131          
BLAST of CV884600 vs. ExPASy Swiss-Prot
Match: SLX1_LEIIN (Structure-specific endonuclease subunit SLX1 homolog OS=Leishmania infantum GN=LinJ25.1380 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.414e-22
Identity = 49/85 (57.65%), Postives = 61/85 (71.76%), Query Frame = 3
Query:  117 FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKKR-RPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRRA 368
            F   YLLTSL P+ +G  YIG+TVNP RR+RQHNGE+  GA RT +R RPW +V C+ GFP + +AL+FEW WQHP  S  +R A
Sbjct:    5 FHCVYLLTSLDPQCEGDFYIGYTVNPLRRLRQHNGELVNGARRTSRRGRPWTIVCCVSGFPDDRAALKFEWCWQHPTASARLRHA 89          
BLAST of CV884600 vs. ExPASy Swiss-Prot
Match: SLX1_CRYNE (Structure-specific endonuclease subunit SLX1 OS=Cryptococcus neoformans GN=SLX1 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.874e-21
Identity = 52/124 (41.94%), Postives = 73/124 (58.87%), Query Frame = 3
Query:  117 FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRRAAATFKSF---------SGVANKIKLAYTMLNLPNWERYAL 461
            F+ACYLL S        TY+G T +P RRIRQHNGE++ GA  T + RPWEM + +YGFP+ ++ALQFEWAWQ P  S  +R      + +         + V  K+ +AY +++L  + R  L
Sbjct:   28 FYACYLLRSKATANSNRTYVGSTPDPPRRIRQHNGELKQGAWSTSRHRPWEMQMIVYGFPSKLAALQFEWAWQKPELSRHLRIRGEDQEYYHIFTKDARRNWVERKVCVAYALISLTPFNRLPL 151          
BLAST of CV884600 vs. ExPASy Swiss-Prot
Match: SLX1_LEIMA (Structure-specific endonuclease subunit SLX1 homolog OS=Leishmania major GN=LmjF25.1330 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.215e-20
Identity = 47/83 (56.63%), Postives = 60/83 (72.29%), Query Frame = 3
Query:  117 FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKKR-RPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVR 362
            F   YLLTSL P+ +G  YIG++VNP RR+RQHNGE+  GA RT +R RPW +V C+ GFP + +AL+FEW WQHP  S  +R
Sbjct:    5 FHCVYLLTSLDPQCEGDFYIGYSVNPLRRLRQHNGELVNGARRTGRRGRPWTIVCCVSGFPDDRTALKFEWCWQHPTASARLR 87          
The following BLAST results are available for this feature:
BLAST of CV884600 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
SLX1_MOUSE1.062e-2448.28Structure-specific endonuclease subunit SLX1 OS=Mu... [more]
SLX1_NEMVE3.090e-2443.51Structure-specific endonuclease subunit SLX1 homol... [more]
SLX1_HUMAN3.090e-2446.55Structure-specific endonuclease subunit SLX1 OS=Ho... [more]
SLX1_BOVIN3.090e-2447.41Structure-specific endonuclease subunit SLX1 OS=Bo... [more]
SLX1_RAT5.270e-2446.55Structure-specific endonuclease subunit SLX1 OS=Ra... [more]
SLX1_XENLA5.827e-2344.92Structure-specific endonuclease subunit slx1 OS=Xe... [more]
SLX1_ANOGA3.777e-2244.09Structure-specific endonuclease subunit SLX1 homol... [more]
SLX1_LEIIN8.414e-2257.65Structure-specific endonuclease subunit SLX1 homol... [more]
SLX1_CRYNE1.874e-2141.94Structure-specific endonuclease subunit SLX1 OS=Cr... [more]
SLX1_LEIMA1.215e-2056.63Structure-specific endonuclease subunit SLX1 homol... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008D12_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T3_D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884600 ID=CV884600; Name=CV884600; organism=Citrus sinensis; type=EST; length=843bp
GCAAAGCAGTTCATGACTCAGAAACCCTAATTTCAAAGTCAAAAACTCTA
GATCCAGTAAAAGATGATTTTGAAGAAGAAGAAGAAGAACAGAAAGCCAA
AGATCAACGGAAAGGGTTCTTCGCTTGTTATCTTTTAACCTCCTTATGCC
CCCGTTTCAAAGGCCACACCTATATCGGATTCACTGTGAACCCGCGTCGT
AGAATTAGGCAGCATAATGGTGAAATAAGGTGTGGGGCAGTGAGGACGAA
GAAAAGGCGCCCTTGGGAAATGGTTTTATGCATTTATGGTTTCCCAACAA
ATGTTTCAGCTCTTCAGTTTGAGTGGGCTTGGCAGCATCCAATGGAATCA
CTGGCTGTAAGGCGGGCAGCTGCTACATTTAAATCCTTCTCTGGAGTTGC
CAATAAAATCAAACTCGCATACACGATGCTCAACCTCCCTAACTGGGAGA
GGTACGCTTTGGTTAACTTGGTTTTATTTAACCAATGGTCGGTCCGTCAA
ATATGTAATGTGCGTCTTCTGTCATCAGCTTGAACATCACGGTGAACTAT
TTTTCAACAAAATACTCGAAACATTCTTCTAGTTGCCCAAACCTGCCAGA
GCACATGAAGGTCCAAGTACGTTCCATGGATGAACTTCCCTGCTATACTG
AAAGAGATGAGCGTTTGTTAGGGGATGAAGACAGCCTGGGTGATGAGGAG
TACGATGAAGCTAGTGAAAACAGTGGAAGTTTAGAGGAAACACGCGGAGA
TGTGACAATTAATTTTTCATCAGATTATTCTTTTAGCATTTATGAGGATG
CCTATGAGCAATGTGGTCAATTTAAACAATATGGAAATGAGCA
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