CV884597

Overview
NameCV884597
Unique NameCV884597
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884597 vs. ExPASy Swiss-Prot
Match: ZGPAT_DROAN (Zinc finger CCCH-type with G patch domain-containing protein OS=Drosophila ananassae GN=GF15731 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.388e-11
Identity = 31/57 (54.39%), Postives = 42/57 (73.68%), Query Frame = -2
Query:   97 KGAQNIGAFEKHTRGFGSKMMAKMGFVEGMGLGRDSQGIVNPLAAVRLPKSRGLGAC 267
            K  + +GA+E++TRG GSK+M KMG++ G GLG D +GIV P++A  LPK R L AC
Sbjct:  299 KPTEKLGAWEEYTRGIGSKLMEKMGYIHGTGLGSDGRGIVTPVSAQILPKGRSLDAC 355          
BLAST of CV884597 vs. ExPASy Swiss-Prot
Match: ZGPAT_DROMO (Zinc finger CCCH-type with G patch domain-containing protein OS=Drosophila mojavensis GN=GI17578 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.037e-11
Identity = 30/57 (52.63%), Postives = 42/57 (73.68%), Query Frame = -2
Query:   97 KGAQNIGAFEKHTRGFGSKMMAKMGFVEGMGLGRDSQGIVNPLAAVRLPKSRGLGAC 267
            K  + +GA+E++TRG GSK+MA MG++ G GLG D +GIV P++A  LP+ R L AC
Sbjct:  298 KPTERLGAWEQYTRGIGSKLMANMGYIHGTGLGSDGRGIVTPVSAQILPQGRSLDAC 354          
BLAST of CV884597 vs. ExPASy Swiss-Prot
Match: ZGPAT_DROGR (Zinc finger CCCH-type with G patch domain-containing protein OS=Drosophila grimshawi GN=GH11061 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.037e-11
Identity = 30/57 (52.63%), Postives = 42/57 (73.68%), Query Frame = -2
Query:   97 KGAQNIGAFEKHTRGFGSKMMAKMGFVEGMGLGRDSQGIVNPLAAVRLPKSRGLGAC 267
            K  + +GA+E++TRG GSK+MA MG++ G GLG D +GIV P++A  LP+ R L AC
Sbjct:  301 KPTEKLGAWEQYTRGIGSKLMANMGYIHGTGLGSDGRGIVTPVSAQILPQGRSLDAC 357          
BLAST of CV884597 vs. ExPASy Swiss-Prot
Match: ZGPAT_DROVI (Zinc finger CCCH-type with G patch domain-containing protein OS=Drosophila virilis GN=GJ17921 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.886e-11
Identity = 30/57 (52.63%), Postives = 42/57 (73.68%), Query Frame = -2
Query:   97 KGAQNIGAFEKHTRGFGSKMMAKMGFVEGMGLGRDSQGIVNPLAAVRLPKSRGLGAC 267
            K  + +GA+E++TRG GSK+MA MG++ G GLG D +GIV P++A  LP+ R L AC
Sbjct:  297 KPNERLGAWEQYTRGIGSKLMASMGYIHGTGLGSDGRGIVTPVSAQILPQGRSLDAC 353          
BLAST of CV884597 vs. ExPASy Swiss-Prot
Match: ZGPAT_DROYA (Zinc finger CCCH-type with G patch domain-containing protein OS=Drosophila yakuba GN=GE18884 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.994e-11
Identity = 30/57 (52.63%), Postives = 41/57 (71.93%), Query Frame = -2
Query:   97 KGAQNIGAFEKHTRGFGSKMMAKMGFVEGMGLGRDSQGIVNPLAAVRLPKSRGLGAC 267
            K  + +GA+E+ TRG GSK+M KMG++ G GLG D +GIV P++A  LP+ R L AC
Sbjct:  300 KPTERLGAWEEFTRGIGSKLMEKMGYIHGTGLGSDGRGIVTPVSAQILPQGRSLDAC 356          
BLAST of CV884597 vs. ExPASy Swiss-Prot
Match: ZGPAT_DROME (Zinc finger CCCH-type with G patch domain-containing protein OS=Drosophila melanogaster GN=CG4709 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.994e-11
Identity = 30/57 (52.63%), Postives = 41/57 (71.93%), Query Frame = -2
Query:   97 KGAQNIGAFEKHTRGFGSKMMAKMGFVEGMGLGRDSQGIVNPLAAVRLPKSRGLGAC 267
            K  + +GA+E+ TRG GSK+M KMG++ G GLG D +GIV P++A  LP+ R L AC
Sbjct:  300 KPTERLGAWEEFTRGIGSKLMEKMGYIHGTGLGSDGRGIVTPVSAQILPQGRSLDAC 356          
BLAST of CV884597 vs. ExPASy Swiss-Prot
Match: ZGPAT_DROER (Zinc finger CCCH-type with G patch domain-containing protein OS=Drosophila erecta GN=GG10072 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.994e-11
Identity = 30/57 (52.63%), Postives = 41/57 (71.93%), Query Frame = -2
Query:   97 KGAQNIGAFEKHTRGFGSKMMAKMGFVEGMGLGRDSQGIVNPLAAVRLPKSRGLGAC 267
            K  + +GA+E+ TRG GSK+M KMG++ G GLG D +GIV P++A  LP+ R L AC
Sbjct:  300 KPTERLGAWEEFTRGIGSKLMEKMGYIHGTGLGSDGRGIVTPVSAQILPQGRSLDAC 356          
The following BLAST results are available for this feature:
BLAST of CV884597 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
ZGPAT_DROAN1.388e-1154.39Zinc finger CCCH-type with G patch domain-containi... [more]
ZGPAT_DROMO4.037e-1152.63Zinc finger CCCH-type with G patch domain-containi... [more]
ZGPAT_DROGR4.037e-1152.63Zinc finger CCCH-type with G patch domain-containi... [more]
ZGPAT_DROVI6.886e-1152.63Zinc finger CCCH-type with G patch domain-containi... [more]
ZGPAT_DROYA8.994e-1152.63Zinc finger CCCH-type with G patch domain-containi... [more]
ZGPAT_DROME8.994e-1152.63Zinc finger CCCH-type with G patch domain-containi... [more]
ZGPAT_DROER8.994e-1152.63Zinc finger CCCH-type with G patch domain-containi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008D10_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T7_D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884597 ID=CV884597; Name=CV884597; organism=Citrus sinensis; type=EST; length=856bp
TTTTTTTTTTTTTTTTTCGAAATGTTCAATTCCAATAGATTATAAGGTAC
ACCACCTTACCCTTTTCTGCTACTTCAATAACCATAACATCTAACTACAG
GCGCCCAAGCCTCGTGATTTGGGTAGCCTGACAGCAGCCAAGGGGTTGAC
AATGCCTTGGGAATCTCTGCCCAAGCCCATGCCTTCAACAAAGCCCATCT
TTGCCATCATCTTTGATCCAAAACCTCTGGTGTGCTTTTCAAAAGCTCCA
ATGTTTTGAGCTCCCTTCTTCGCCGAGTTACTGCGAGATTCCTTCCTCGC
CGAGTCACTGCGAGATTCCTTTCTTGACGAGTCATCATCAGTGTTGGAAA
ATTCCACACCCAGCCCAAGCTTCTTAGGCCGTTGGATGGCTTCAATGGGT
TTAGACATACCTTGACCATCCTTCCCTAATCCTCCCCCCTCTACATATCC
CATTTTTGCCATCATCTTGGATCCAAAACCCTTTGTGTGAACCTCAAATG
CACCGATCTGTGTTGAGCTGACTGTACCCTTACTTTCAAAAGTCTCATTT
ATCTCTACAGCATCAACAGTTCTGATCTCAACACTATCAGATTGCAATAT
GCCACTTGACACAAATGACATAGGCTGATTGGCATAGGCAACTTTTTTCC
CACTCCCTTTCTTCTTACTTGCTTTACCACTATTACCATGGACAGTGACA
CTCTTCGATGACTTGCTGCTCTTTCTGTCTGCACTTGCTGATTTTGTATA
TGGGCCTTCAGTAATGGCAAAATCAATATCTTCATTGCCAGCTCCTATCA
GCTTTTCCAGGCGAAGCCTGTCAGCTGAAGATGGCATGCATGTATGCTGT
GTTCGT
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