CV884590

Overview
NameCV884590
Unique NameCV884590
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV884590 vs. ExPASy Swiss-Prot
Match: MCM33_MAIZE (DNA replication licensing factor MCM3 homolog 3 OS=Zea mays GN=ROA3 PE=2 SV=1)

HSP 1 Score: 348.206 bits (892), Expect = 1.667e-95
Identity = 177/187 (94.65%), Postives = 183/187 (97.86%), Query Frame = 3 
Query:    6 NLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVLRMHRYLSVMDGG 566
            NLKNGTHLRGDINMMMVGDPSVAKSQLLRA+MNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSV+AAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDP+IDR+IS+HV RMHRY +  DGG
Sbjct:  323 NLKNGTHLRGDINMMMVGDPSVAKSQLLRAVMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVIAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPEIDRQISEHVARMHRYCT-DDGG 508
[Close]
BLAST of CV884590 vs. ExPASy Swiss-Prot
Match: MCM32_MAIZE (DNA replication licensing factor MCM3 homolog 2 OS=Zea mays GN=ROA2 PE=2 SV=1)

HSP 1 Score: 348.206 bits (892), Expect = 1.667e-95
Identity = 177/187 (94.65%), Postives = 183/187 (97.86%), Query Frame = 3 
Query:    6 NLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVLRMHRYLSVMDGG 566
            NLKNGTHLRGDINMMMVGDPSVAKSQLLRA+MNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSV+AAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDP+IDR+IS+HV RMHRY +  DGG
Sbjct:  323 NLKNGTHLRGDINMMMVGDPSVAKSQLLRAVMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVIAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPEIDRQISEHVARMHRYCT-DDGG 508
[Close]
BLAST of CV884590 vs. ExPASy Swiss-Prot
Match: MCM31_MAIZE (DNA replication licensing factor MCM3 homolog 1 OS=Zea mays GN=ROA1 PE=2 SV=2)

HSP 1 Score: 348.206 bits (892), Expect = 1.667e-95
Identity = 177/187 (94.65%), Postives = 183/187 (97.86%), Query Frame = 3 
Query:    6 NLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVLRMHRYLSVMDGG 566
            NLKNGTHLRGDINMMMVGDPSVAKSQLLRA+MNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSV+AAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDP+IDR+IS+HV RMHRY +  DGG
Sbjct:  323 NLKNGTHLRGDINMMMVGDPSVAKSQLLRAVMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVIAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPEIDRQISEHVARMHRYCT-DDGG 508
[Close]
BLAST of CV884590 vs. ExPASy Swiss-Prot
Match: MCM3_ARATH (DNA replication licensing factor MCM3 homolog OS=Arabidopsis thaliana GN=MCM3 PE=2 SV=1)

HSP 1 Score: 343.584 bits (880), Expect = 4.105e-94
Identity = 177/190 (93.16%), Postives = 181/190 (95.26%), Query Frame = 3 
Query:    6 NLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVLRMHRYLSVMDGGEGG 575
            NLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLAD+G+VCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMD  ID  IS+HVLRMHRY +  D GE G
Sbjct:  318 NLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADKGIVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDAGIDSMISEHVLRMHRYKN--DRGEAG 505
[Close]
BLAST of CV884590 vs. ExPASy Swiss-Prot
Match: MCM3_SCHPO (DNA replication licensing factor mcm3 OS=Schizosaccharomyces pombe GN=mcm3 PE=1 SV=2)

HSP 1 Score: 294.278 bits (752), Expect = 2.856e-79
Identity = 147/181 (81.22%), Postives = 162/181 (89.50%), Query Frame = 3 
Query:    6 NLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVLRMHRYL 548
            NL NGTH+RGDIN++MVGDPS AKSQLLR ++N APLAI+TTGRGSSGVGLTAAVT+D+ETGERRLEAGAMVLADRGVVCIDEFDKM+D DRVAIHEVMEQQTVTIAKAGIH SLNARCSV+AAANPIYG YD    P +NI LPDS+LSRFDLLFIV D +D   DR +S+HVLRMHRYL
Sbjct:  339 NLTNGTHIRGDINILMVGDPSTAKSQLLRFVLNTAPLAIATTGRGSSGVGLTAAVTTDKETGERRLEAGAMVLADRGVVCIDEFDKMSDIDRVAIHEVMEQQTVTIAKAGIHTSLNARCSVIAAANPIYGQYDIRKDPHQNIALPDSMLSRFDLLFIVTDDIDDKKDRALSEHVLRMHRYL 519
[Close]
BLAST of CV884590 vs. ExPASy Swiss-Prot
Match: MCM3_PONAB (DNA replication licensing factor MCM3 OS=Pongo abelii GN=MCM3 PE=2 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 6.362e-79
Identity = 145/180 (80.56%), Postives = 163/180 (90.56%), Query Frame = 3 
Query:    6 NLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVLRMHRY 545
            +L+NG+H+RGDIN++++GDPSVAKSQLLR ++  AP AI TTGRGSSGVGLTAAVT+DQETGERRLEAGAMVLADRGVVCIDEFDKM+D DR AIHEVMEQ  VTIAKAGIHA LNARCSV+AAANP+YG YD+  TP +NIGL DSLLSRFDLLFI+LDQMDP+ DR ISDHVLRMHRY
Sbjct:  328 DLENGSHIRGDINILLIGDPSVAKSQLLRYVLCTAPRAIPTTGRGSSGVGLTAAVTTDQETGERRLEAGAMVLADRGVVCIDEFDKMSDMDRTAIHEVMEQGRVTIAKAGIHARLNARCSVLAAANPVYGRYDQYKTPMENIGLQDSLLSRFDLLFIMLDQMDPEQDREISDHVLRMHRY 507
[Close]
BLAST of CV884590 vs. ExPASy Swiss-Prot
Match: MCM3_HUMAN (DNA replication licensing factor MCM3 OS=Homo sapiens GN=MCM3 PE=1 SV=3)

HSP 1 Score: 293.123 bits (749), Expect = 6.362e-79
Identity = 145/180 (80.56%), Postives = 163/180 (90.56%), Query Frame = 3 
Query:    6 NLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVLRMHRY 545
            +L+NG+H+RGDIN++++GDPSVAKSQLLR ++  AP AI TTGRGSSGVGLTAAVT+DQETGERRLEAGAMVLADRGVVCIDEFDKM+D DR AIHEVMEQ  VTIAKAGIHA LNARCSV+AAANP+YG YD+  TP +NIGL DSLLSRFDLLFI+LDQMDP+ DR ISDHVLRMHRY
Sbjct:  328 DLENGSHIRGDINILLIGDPSVAKSQLLRYVLCTAPRAIPTTGRGSSGVGLTAAVTTDQETGERRLEAGAMVLADRGVVCIDEFDKMSDMDRTAIHEVMEQGRVTIAKAGIHARLNARCSVLAAANPVYGRYDQYKTPMENIGLQDSLLSRFDLLFIMLDQMDPEQDREISDHVLRMHRY 507
[Close]
BLAST of CV884590 vs. ExPASy Swiss-Prot
Match: MCM3_BOVIN (DNA replication licensing factor MCM3 OS=Bos taurus GN=MCM3 PE=2 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 6.362e-79
Identity = 145/180 (80.56%), Postives = 163/180 (90.56%), Query Frame = 3 
Query:    6 NLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVLRMHRY 545
            +L+NG+H+RGDIN++++GDPSVAKSQLLR ++  AP AI TTGRGSSGVGLTAAVT+DQETGERRLEAGAMVLADRGVVCIDEFDKM+D DR AIHEVMEQ  VTIAKAGIHA LNARCSV+AAANP+YG YD+  TP +NIGL DSLLSRFDLLFI+LDQMDP+ DR ISDHVLRMHRY
Sbjct:  328 DLENGSHIRGDINILLIGDPSVAKSQLLRYVLCTAPRAIPTTGRGSSGVGLTAAVTTDQETGERRLEAGAMVLADRGVVCIDEFDKMSDMDRTAIHEVMEQGRVTIAKAGIHARLNARCSVLAAANPVYGRYDQYKTPMENIGLQDSLLSRFDLLFIMLDQMDPEQDREISDHVLRMHRY 507
[Close]
BLAST of CV884590 vs. ExPASy Swiss-Prot
Match: MCM3_MOUSE (DNA replication licensing factor MCM3 OS=Mus musculus GN=Mcm3 PE=1 SV=2)

HSP 1 Score: 291.197 bits (744), Expect = 2.418e-78
Identity = 144/179 (80.45%), Postives = 162/179 (90.50%), Query Frame = 3 
Query:    9 LKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVLRMHRY 545
            L+NG+H+RGDIN++++GDPSVAKSQLLR ++  AP AI TTGRGSSGVGLTAAVT+DQETGERRLEAGAMVLADRGVVCIDEFDKM+D DR AIHEVMEQ  VTIAKAGIHA LNARCSV+AAANP+YG YD+  TP +NIGL DSLLSRFDLLFI+LDQMDP+ DR ISDHVLRMH+Y
Sbjct:  329 LENGSHIRGDINILLIGDPSVAKSQLLRYVLCTAPRAIPTTGRGSSGVGLTAAVTTDQETGERRLEAGAMVLADRGVVCIDEFDKMSDMDRTAIHEVMEQGRVTIAKAGIHARLNARCSVLAAANPVYGRYDQYKTPMENIGLQDSLLSRFDLLFIMLDQMDPEQDREISDHVLRMHQY 507
[Close]
BLAST of CV884590 vs. ExPASy Swiss-Prot
Match: MCM3Z_XENLA (Zygotic DNA replication licensing factor mcm3 OS=Xenopus laevis GN=zmcm3 PE=1 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 2.418e-78
Identity = 146/181 (80.66%), Postives = 161/181 (88.95%), Query Frame = 3 
Query:    9 LKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVLRMHRYLS 551
            L NGT +RGDIN++++GDPSVAKSQLLR ++  AP AI TTGRGSSGVGLTAAVT+DQETGERRLEAGAMVLADRGVVCIDEFDKM+D DR AIHEVMEQ  VTIAKAGIHA LNARCSV+AAANP+YG YD+  TP +NIGL DSLLSRFDLLFI+LDQMDP+ DR ISDHVLRMHRY S
Sbjct:  329 LDNGTRIRGDINVLLIGDPSVAKSQLLRYVLFTAPRAIPTTGRGSSGVGLTAAVTTDQETGERRLEAGAMVLADRGVVCIDEFDKMSDMDRTAIHEVMEQGRVTIAKAGIHARLNARCSVLAAANPVYGRYDQYKTPMENIGLQDSLLSRFDLLFIMLDQMDPEHDREISDHVLRMHRYRS 509
The following BLAST results are available for this feature:
BLAST of CV884590 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
MCM33_MAIZE1.667e-9594.65DNA replication licensing factor MCM3 homolog 3 OS... [more]
MCM32_MAIZE1.667e-9594.65DNA replication licensing factor MCM3 homolog 2 OS... [more]
MCM31_MAIZE1.667e-9594.65DNA replication licensing factor MCM3 homolog 1 OS... [more]
MCM3_ARATH4.105e-9493.16DNA replication licensing factor MCM3 homolog OS=A... [more]
MCM3_SCHPO2.856e-7981.22DNA replication licensing factor mcm3 OS=Schizosac... [more]
MCM3_PONAB6.362e-7980.56DNA replication licensing factor MCM3 OS=Pongo abe... [more]
MCM3_HUMAN6.362e-7980.56DNA replication licensing factor MCM3 OS=Homo sapi... [more]
MCM3_BOVIN6.362e-7980.56DNA replication licensing factor MCM3 OS=Bos tauru... [more]
MCM3_MOUSE2.418e-7880.45DNA replication licensing factor MCM3 OS=Mus muscu... [more]
MCM3Z_XENLA2.418e-7880.66Zygotic DNA replication licensing factor mcm3 OS=X... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008D07_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T3_D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884590 ID=CV884590; Name=CV884590; organism=Citrus sinensis; type=EST; length=577bp
ACGTGAATTTAAAGAATGGCACTCACTTACGAGGGGACATTAACATGATG
ATGGTTGGCGATCCTTCTGTTGCAAAGTCACAACTTCTGAGAGCAATAAT
GAATATTGCTCCCTTGGCCATATCAACCACTGGTCGTGGTTCTTCTGGTG
TTGGTTTGACAGCCGCTGTAACTTCTGATCAAGAAACAGGGGAAAGAAGA
CTAGAAGCTGGTGCCATGGTACTTGCTGATAGAGGTGTTGTCTGCATTGA
TGAATTTGACAAGATGAATGATCAAGATCGTGTTGCTATACATGAGGTCA
TGGAGCAGCAGACTGTGACCATTGCAAAAGCTGGTATTCATGCATCTCTG
AATGCTCGATGCAGTGTTGTGGCTGCTGCTAATCCTATCTATGGAACTTA
TGATCGTTCATTGACTCCAACAAAGAATATTGGACTTCCAGACTCTTTGC
TTTCTCGTTTTGATTTACTGTTTATTGTATTGGATCAAATGGATCCCGAT
ATTGACCGACGCATCTCGGATCATGTCTTACGGATGCACCGGTATCTGTC
TGTAATGGATGGAGGAGAGGGAGGACT
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