EY665290

Overview
NameEY665290
Unique NameEY665290
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1061
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665290 vs. ExPASy Swiss-Prot
Match: ADF_VITVI (Actin-depolymerizing factor OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 4.679e-34
Identity = 67/74 (90.54%), Postives = 73/74 (98.65%), Query Frame = 2
Query:   38 CRYAVYDFDFVTSQNCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 259
            CRYAVYDFDFVTS+NCQKSKIFFIAWSPD SRIRAKMLYATSK+RFRRELDG+HYEIQATDP+EMDLEV+R+RA
Sbjct:   69 CRYAVYDFDFVTSENCQKSKIFFIAWSPDSSRIRAKMLYATSKERFRRELDGVHYEIQATDPTEMDLEVLRERA 142          
BLAST of EY665290 vs. ExPASy Swiss-Prot
Match: ADF11_ORYSJ (Actin-depolymerizing factor 11 OS=Oryza sativa subsp. japonica GN=ADF11 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 3.961e-33
Identity = 63/76 (82.89%), Postives = 73/76 (96.05%), Query Frame = 2
Query:   32 SHCRYAVYDFDFVTSQNCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 259
            S CRYA+YDFDFVT +NCQKSKIFF+AWSP VSRIRAKMLYATSK+RFRRELDG+HYEIQATDPSE+D+E++R+RA
Sbjct:   69 SDCRYAIYDFDFVTEENCQKSKIFFVAWSPSVSRIRAKMLYATSKERFRRELDGVHYEIQATDPSELDIELLRERA 144          
BLAST of EY665290 vs. ExPASy Swiss-Prot
Match: ADF2_ORYSJ (Actin-depolymerizing factor 2 OS=Oryza sativa subsp. japonica GN=ADF2 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 2.034e-29
Identity = 59/74 (79.73%), Postives = 68/74 (91.89%), Query Frame = 2
Query:   38 CRYAVYDFDFVTSQNCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 259
            CRYA+YDFDFVT +N QKSKIFFIAWSP  SRIRAKMLY+TSKDR ++ELDG HYEIQATDP+E+DLEV+R+RA
Sbjct:   71 CRYALYDFDFVTGENVQKSKIFFIAWSPSTSRIRAKMLYSTSKDRIKQELDGFHYEIQATDPTEVDLEVLRERA 144          
BLAST of EY665290 vs. ExPASy Swiss-Prot
Match: ADF6_ARATH (Actin-depolymerizing factor 6 OS=Arabidopsis thaliana GN=ADF6 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 4.532e-29
Identity = 59/74 (79.73%), Postives = 67/74 (90.54%), Query Frame = 2
Query:   38 CRYAVYDFDFVTSQNCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 259
            CRYAVYDFDFVTS+NCQKSKIFF AWSP  S IRAK+LY+TSKD+  REL GIHYEIQATDP+E+DLEV+R+RA
Sbjct:   72 CRYAVYDFDFVTSENCQKSKIFFFAWSPSTSGIRAKVLYSTSKDQLSRELQGIHYEIQATDPTEVDLEVLRERA 145          
BLAST of EY665290 vs. ExPASy Swiss-Prot
Match: ADF1_ARATH (Actin-depolymerizing factor 1 OS=Arabidopsis thaliana GN=ADF1 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 4.532e-29
Identity = 55/74 (74.32%), Postives = 69/74 (93.24%), Query Frame = 2
Query:   38 CRYAVYDFDFVTSQNCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 259
            CRYA+YDFDFVT++NCQKSKIFFIAW PD++++R+KM+YA+SKDRF+RELDGI  E+QATDP+EMDL+V R RA
Sbjct:   65 CRYAIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVFRSRA 138          
BLAST of EY665290 vs. ExPASy Swiss-Prot
Match: ADF6_ORYSJ (Actin-depolymerizing factor 6 OS=Oryza sativa subsp. japonica GN=ADF6 PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 1.319e-28
Identity = 55/76 (72.37%), Postives = 69/76 (90.79%), Query Frame = 2
Query:   32 SHCRYAVYDFDFVTSQNCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 259
            S CRYAV+DFDFVT +NCQKSKIFFI+WSPD S++R+KMLYA+SKDRF+RELDGI  E+QATDPSEM +++++ RA
Sbjct:   63 SECRYAVFDFDFVTDENCQKSKIFFISWSPDTSKVRSKMLYASSKDRFKRELDGIQVELQATDPSEMSMDIVKARA 138          
BLAST of EY665290 vs. ExPASy Swiss-Prot
Match: ADF4_ARATH (Actin-depolymerizing factor 4 OS=Arabidopsis thaliana GN=ADF4 PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 1.319e-28
Identity = 54/73 (73.97%), Postives = 69/73 (94.52%), Query Frame = 2
Query:   38 CRYAVYDFDFVTSQNCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDR 256
            CRYA+YDFDFVT++NCQKSKIFFIAW PDV+++R+KM+YA+SKDRF+RELDGI  E+QATDP+EMDL+V++ R
Sbjct:   65 CRYAIYDFDFVTAENCQKSKIFFIAWCPDVAKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVLKSR 137          
BLAST of EY665290 vs. ExPASy Swiss-Prot
Match: ADF_LILLO (Actin-depolymerizing factor OS=Lilium longiflorum PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 2.249e-28
Identity = 55/76 (72.37%), Postives = 69/76 (90.79%), Query Frame = 2
Query:   32 SHCRYAVYDFDFVTSQNCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 259
            + CRYAV+DFDFVT +NCQKSKIFFI+WSPD SR+R+KMLYA++KDRF+RELDGI  E+QATDPSEM +++I+ RA
Sbjct:   63 NECRYAVFDFDFVTDENCQKSKIFFISWSPDTSRVRSKMLYASTKDRFKRELDGIQVELQATDPSEMSMDIIKARA 138          
BLAST of EY665290 vs. ExPASy Swiss-Prot
Match: ADF1_ORYSJ (Actin-depolymerizing factor 1 OS=Oryza sativa subsp. japonica GN=ADF1 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 2.249e-28
Identity = 54/74 (72.97%), Postives = 68/74 (91.89%), Query Frame = 2
Query:   38 CRYAVYDFDFVTSQNCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 259
            CRYAV+DFDFVT +NCQKSKIFFI+W+PD SR+R+KMLYA+SKDRF+RELDGI  E+QATDPSEM +++++ RA
Sbjct:   65 CRYAVFDFDFVTDENCQKSKIFFISWAPDTSRVRSKMLYASSKDRFKRELDGIQVELQATDPSEMSMDIVKSRA 138          
BLAST of EY665290 vs. ExPASy Swiss-Prot
Match: ADF10_ARATH (Actin-depolymerizing factor 10 OS=Arabidopsis thaliana GN=ADF10 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 2.249e-28
Identity = 56/73 (76.71%), Postives = 66/73 (90.41%), Query Frame = 2
Query:   38 CRYAVYDFDFVTSQNCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDR 256
            CRYAVYD+DF T +NCQKSKIFFIAWSPD SR+R+KMLYA+SKDRF+RELDGI  E+QATDPSEM L++I+ R
Sbjct:   65 CRYAVYDYDFTTPENCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKRELDGIQVELQATDPSEMSLDIIKGR 137          
The following BLAST results are available for this feature:
BLAST of EY665290 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
ADF_VITVI4.679e-3490.54Actin-depolymerizing factor OS=Vitis vinifera PE=2... [more]
ADF11_ORYSJ3.961e-3382.89Actin-depolymerizing factor 11 OS=Oryza sativa sub... [more]
ADF2_ORYSJ2.034e-2979.73Actin-depolymerizing factor 2 OS=Oryza sativa subs... [more]
ADF6_ARATH4.532e-2979.73Actin-depolymerizing factor 6 OS=Arabidopsis thali... [more]
ADF1_ARATH4.532e-2974.32Actin-depolymerizing factor 1 OS=Arabidopsis thali... [more]
ADF6_ORYSJ1.319e-2872.37Actin-depolymerizing factor 6 OS=Oryza sativa subs... [more]
ADF4_ARATH1.319e-2873.97Actin-depolymerizing factor 4 OS=Arabidopsis thali... [more]
ADF_LILLO2.249e-2872.37Actin-depolymerizing factor OS=Lilium longiflorum ... [more]
ADF1_ORYSJ2.249e-2872.97Actin-depolymerizing factor 1 OS=Oryza sativa subs... [more]
ADF10_ARATH2.249e-2876.71Actin-depolymerizing factor 10 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-086-C02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665290 ID=EY665290; Name=EY665290; organism=Citrus sinensis; type=EST; length=1061bp
CACGCGTCCGCACTGCATCTTTGCCGGATAATCGCACTGTCGTTATGCAG
TTTATGACTTTGATTTTGTGACCTCACAGAATTGTCAGAAAAGCAAGATC
TTTTTCATTGCATGGTCTCCTGACGTGTCCCGAATCCGAGCTAAGATGCT
GTATGCAACATCAAAGGACAGGTTCAGGAGGGAGCTGGACGGCATCCACT
ATGAAATTCAGGCAACTGACCCAAGTGAGATGGATCTTGAGGTGATCAGA
GACCGTGCACGCTGAGAATTCACCGAAGGAAAAAGAATTTGTTTCCTTGA
GACTGCATTTGTGGTCTGAAGGCACAAACTGTCCTCCAATTAGTTGCCGT
AATTTTGTGTGGCACATAGTACATATAGCTATTGGTTAAAATAATCAGCA
CCTGAGAAGGCTGATAACCAAGCTCATGGGGTGAAGGCACTGCGAATGCC
AGAGGGAACACGGGCTCTCTAATTGCCCTGAAGGCTTCCCAAGGTAAAAA
TTGGACATTGGGCTGGGAATTTTTTATGCGGTTCAACTTTTTTCTTAATG
GAAATGGGTTATTTCTCCTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAGGGGCGGCCCCCCTCCTAAAGAGAATCAAAGGTTTAATT
TAGGGTTTGGGATTGGGAACGGACAAAACCTTCTTCTTATAGTGGGGACC
CCCAAAATTTTATATTTTCCGGGGGCCCGCCCGTTTTTTAAATCTCGTGC
GGGGGTGGGGGAAAAAAACCTCTGGGGCTATTACCCACTGTTTTAATTTC
CCTTATTTAAATACAAATACCCCCCCTTTTTTCCCCGCAGTGTGTGGGAG
TAATAATCAGCTAAGAAAAGGACCCCCCGCACCACCTTATGCCCCCCCCC
CACTCCCCAATACTATTTGGCCCGACCCATCGATGAGATGGAGAAAAAAA
AGGGGGAGGGACAACCGCCACCCCTAGAATGTGGATGGACAGCAAAATAT
AACATTATGCCGGGTGGGAGTGAGGGGTGGGGGGGGGGGAGGGGGATGTG
GTAAATCCATC
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