CV884520

Overview
NameCV884520
Unique NameCV884520
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length327
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3363 contig Csv1_Contig3363:509..835. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CV884520 vs. ExPASy Swiss-Prot
Match: MSI5_ARATH (WD-40 repeat-containing protein MSI5 OS=Arabidopsis thaliana GN=MSI5 PE=2 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.541e-11
Identity = 29/34 (85.29%), Postives = 32/34 (94.12%), Query Frame = -1 
Query:  178 LQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK 279
            LQIWRMSDLIYRP+DEVL ELEKFK+HV +CTSK
Sbjct:  453 LQIWRMSDLIYRPEDEVLTELEKFKSHVFTCTSK 486
[Close]
BLAST of CV884520 vs. ExPASy Swiss-Prot
Match: MSI4_ARATH (WD-40 repeat-containing protein MSI4 OS=Arabidopsis thaliana GN=MSI4 PE=1 SV=3)

HSP 1 Score: 65.855 bits (159), Expect = 7.541e-11
Identity = 28/35 (80.00%), Postives = 34/35 (97.14%), Query Frame = -1 
Query:  175 LQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 279
            LQIWRMSDLIYRP++EV+AELEKFK+HV++C SKP
Sbjct:  473 LQIWRMSDLIYRPEEEVVAELEKFKSHVMTCASKP 507
The following BLAST results are available for this feature:
BLAST of CV884520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
MSI5_ARATH7.541e-1185.29WD-40 repeat-containing protein MSI5 OS=Arabidopsi... [more]
MSI4_ARATH7.541e-1180.00WD-40 repeat-containing protein MSI4 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008A03_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T7_A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884520 ID=CV884520; Name=CV884520; organism=Citrus sinensis; type=EST; length=327bp
TTTTTTTTTTTTTTTTTCTTGAACGTATAGTCTACTAAAATCCAACTAAA
TAAAGGATACCAATCAATTTCCAAGTGTCTAGTGTACCCAATAGCTCAAT
AAAGATGATAAACTACAAGAAGTTCTAGACATCTAAACAAGTGCTCTACG
ATTTCTTATCACTCGGTTGACTCAAGGCTTTGAAGTACATGAAATTACGT
GGGCCTTGAACTTCTCAAGCTCTGCTAAAACCTCATCTTGCGGCCGATAG
ATCAAATCACTCATGCGCCATATCTGCAGTGTTCCTCCTCCACCAGTAGA
ATCGCAGTCATCAGAGACACTAACCCT
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