CV884460

Overview
NameCV884460
Unique NameCV884460
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length858
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CV884460 vs. ExPASy Swiss-Prot
Match: GOGC1_ARATH (Golgin candidate 1 OS=Arabidopsis thaliana GN=GC1 PE=2 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 8.952e-27
Identity = 73/130 (56.15%), Postives = 81/130 (62.31%), Query Frame = -3 
Query:  467 QTQLETMASEKAAAEFQLEKEMNRLQXXXXXXXXXXXXXXXXXXXXXXXEMKSLEPLPLHHRHIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARIIXXXXXXXXXXXXXXXXHRLQEQADNFAAREVA 856
            QTQLETMASEKAAAEFQLEKE+ RL                        E+K+LEPLPL+HRH+A AS QLQ A KLLDSGAVRATRFLWRYPIAR+                 HRLQEQA+   A+EVA
Sbjct:  572 QTQLETMASEKAAAEFQLEKEVKRLHEAQVEVEKSRVSRRASATWEEDSEIKTLEPLPLYHRHMATASTQLQNAVKLLDSGAVRATRFLWRYPIARMFLLFYLVFVHLFLMYLIHRLQEQAE---AQEVA 698
[Close]
BLAST of CV884460 vs. ExPASy Swiss-Prot
Match: GOGA5_ORYSJ (Golgin-84 OS=Oryza sativa subsp. japonica GN=Os01g0744400 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.912e-25
Identity = 70/142 (49.30%), Postives = 85/142 (59.86%), Query Frame = -3 
Query:  434 QTQLETMASEKAAAEFQLEKEMNRLQXXXXXXXXXXXXXXXXXXXXXXXEMKSLEPLPLHHRHIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARIIXXXXXXXXXXXXXXXXHRLQEQADNFAAREVAESM-GLTTSNLP 856
            QTQLE+MASEKAA EFQLEK + +                         ++K+LEPLPLHHRH+A A+ QLQKAAKLLDSGAVRATRFLWR+P+AR+                 HRLQ+    FA+RE   +M GL  S+LP
Sbjct:  572 QTQLESMASEKAALEFQLEKSIKQFHEVQMEAERSRVARRSASAWEEDADIKALEPLPLHHRHMATANQQLQKAAKLLDSGAVRATRFLWRHPVARVSLLFYLVFVHLFLMYLMHRLQD----FASREGPTAMGGLANSDLP 709
The following BLAST results are available for this feature:
BLAST of CV884460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
GOGC1_ARATH8.952e-2756.15Golgin candidate 1 OS=Arabidopsis thaliana GN=GC1 ... [more]
GOGA5_ORYSJ4.912e-2549.30Golgin-84 OS=Oryza sativa subsp. japonica GN=Os01g... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003E12_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T7_E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884460 ID=CV884460; Name=CV884460; organism=Citrus sinensis; type=EST; length=858bp
TCAAGTATAAAGGTCTACAATTTTACAATATTTTTTGGGAGTAGTCTCAT
TTTCAGTTGTCATTTCAGTGACCCCGAAATTCAAAAAAAAAAAAAAGGGA
AAAAAAAAGATCAAACTAATCACCAGAAAATGTTAATAAACAGCATATGG
GCATTGGCATTGAGCTCCTAGATAAGCCATACAACTGAATTTGTACCGTC
ACCTGAATTCAGTTGACTATTTCTCAGCCGCATCAGTTTCCCCAGGATTG
ACTATTTCCTCTGGGGATTCTGATATAATGAGGACTGTAAATAGGTTTTC
ATCTTCTGTAATTTTTACAATTTGAAAGCATTTTTTAAGCCGTATGTGTT
TGTTGAAAACTTGAACACATGCCCTTGCAGACACGAAATCAATCATTCAG
AAAGCTACAGCACCCTGAGGAGCCGCCCAATCATGGTAAGTTAGAGGTGG
TGAGACCCATAGATTCAGCAACTTCTCTTGCAGCAAAATTATCTGCTTGT
TCCTGAAGACGGTGCAACAAATACATCAAGAAGAGATGTACAAATACAAG
GTAGAAAAGCAAAATGATTCGTGCTATTGGGTAGCGCCAAAGAAATCGTG
TGGCCCTTACAGCCCCTGAATCCAGAAGTTTTGCTGCCTTTTGCAGCTGC
ACACTTGCCCCAGCAATGTGACGATGATGCAATGGGAGAGGCTCAAGACT
CTTCATTTCAGCATCTTCTTCCCAAGATGACCATGATCGACGAGAAACTC
TACTTCTCTCTGCCTCTGACTGTACTTCTTGAAGACGATTCATTTCCTTC
TCCAACTGAAATTCTGCAGCAGCCTTTTCACTGGCCATGGTTTCAAGCTG
TGTTTGCT
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