CV884459

Overview
NameCV884459
Unique NameCV884459
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3341 contig Csv1_Contig3341:1..856. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of CV884459 vs. ExPASy Swiss-Prot
Match: GOGC1_ARATH (Golgin candidate 1 OS=Arabidopsis thaliana GN=GC1 PE=2 SV=2)

HSP 1 Score: 242.276 bits (617), Expect = 2.649e-63
Identity = 158/305 (51.80%), Postives = 198/305 (64.92%), Query Frame = 3
Query:   15 SIPLTEQSKDMSKHDADRVEIPETFTDLDTATP---NGEILNENDSDVHLNHPPSPLPPKEMGIVNEDRIDDAGQITKSADADAPLK-----IDSKIQAVDPPVNSESSLKDA--DVKVETLSNKRKQQALK---------------ADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVE 854
            S+PL+      +K D   V   E+  D D +     +G+I N++     L  P   LP KE+ +V  + + DA +     + D   K     +DS + A  P VN  +  +    +VKV T  N  K+Q  K               AD    K QDQL+EAQGLLK T+STGQSKEARLARVCAGLSSRLQE K+ENAQLEELL AE+EL++SYEA I+ L+++LS  KSEVTKVES++ EALAAKNSEIETLVS++DALK QAAL+EG L+SLQ +MESIMRNREL ETRM+QALREELA+ E
Sbjct:  116 SLPLSVAD---TKSDDAAVVAQESIVDGDRSESKHADGDIPNDS-----LVQPSPSLPDKEIEVVVSENLMDAPKNGTQRELDDSSKRDVENLDSVVHA--PSVNEGNVAQSTGDEVKVGTSINLEKEQEPKVPVTSTNLKREQDRRADTTSMKIQDQLEEAQGLLKATVSTGQSKEARLARVCAGLSSRLQEIKAENAQLEELLTAEQELTKSYEASIRHLQKDLSAAKSEVTKVESSMVEALAAKNSEIETLVSAMDALKNQAALNEGKLSSLQGDMESIMRNRELAETRMMQALREELATTE 410          
BLAST of CV884459 vs. ExPASy Swiss-Prot
Match: GOGA5_ORYSJ (Golgin-84 OS=Oryza sativa subsp. japonica GN=Os01g0744400 PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 1.009e-54
Identity = 118/188 (62.77%), Postives = 145/188 (77.13%), Query Frame = 3
Query:  303 NSESSLKDADVKVETLSNK----RKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVE 854
            +++ S K  D K E LS+       QQ  K D    K+QDQL+EA+GLLK  + TGQSKEARLARVCAGLSSRLQEYKSENAQLEELLV ERE   SYEA +KQL+QELS+ + E ++ ESN+ +AL AKN+EIE+LV S+D+ KK+AA SE  LA+LQ +M+ + RNRELTETR+IQALREELA+VE
Sbjct:  223 DTQVSGKSQDSKREGLSDSPESTENQQEHKLDSGSVKDQDQLEEARGLLKNVVKTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVQEREKCSSYEAHMKQLQQELSMSRVEGSRAESNMVDALTAKNAEIESLVKSLDSWKKKAAASEEKLAALQEDMDGLKRNRELTETRVIQALREELATVE 410          
The following BLAST results are available for this feature:
BLAST of CV884459 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
GOGC1_ARATH2.649e-6351.80Golgin candidate 1 OS=Arabidopsis thaliana GN=GC1 ... [more]
GOGA5_ORYSJ1.009e-5462.77Golgin-84 OS=Oryza sativa subsp. japonica GN=Os01g... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_003E12_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T3_E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884459 ID=CV884459; Name=CV884459; organism=Citrus sinensis; type=EST; length=856bp
AGAGAGATGCCCCCAGCATTCCCTTAACAGAGCAATCTAAGGATATGTCT
AAACATGATGCTGATCGAGTAGAAATCCCTGAAACTTTTACCGATTTGGA
CACTGCTACTCCAAATGGTGAGATTCTTAATGAGAATGATTCAGATGTTC
ATTTAAATCATCCTCCTTCACCATTGCCTCCCAAAGAAATGGGGATTGTC
AATGAAGACCGTATAGATGATGCTGGCCAAATTACCAAATCAGCAGATGC
TGATGCGCCGTTGAAGATTGATAGTAAGATTCAAGCTGTCGATCCTCCTG
TTAATAGTGAAAGTTCATTGAAGGATGCTGATGTTAAAGTTGAAACTCTT
TCCAATAAGAGGAAGCAACAAGCTCTTAAAGCTGATGATCCACCTACAAA
AGAACAGGACCAACTTGATGAGGCTCAAGGGTTGCTCAAAACTACAATTT
CCACTGGTCAGTCAAAAGAGGCTAGGTTGGCTCGGGTTTGTGCTGGACTC
TCATCTCGTCTACAAGAGTACAAATCTGAAAATGCACAACTAGAGGAACT
TCTTGTTGCGGAGAGAGAGCTGAGTAGATCATATGAGGCTCGCATAAAAC
AGCTAGAGCAAGAATTATCTGTATATAAAAGTGAGGTAACGAAGGTGGAG
TCAAACCTGGCTGAGGCTTTGGCAGCAAAGAACTCTGAAATTGAGACACT
CGTCAGTTCTATAGATGCACTTAAGAAACAGGCTGCTTTATCTGAAGGAA
ATTTGGCTTCACTTCAGATGAACATGGAATCCATTATGAGAAATAGAGAG
TTAACAGAGACTAGGATGATACAGGCTTTACGGGAGGAGCTTGCCTCTGT
AGAAAG
back to top