CV884458

Overview
NameCV884458
Unique NameCV884458
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length944
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884458_ssr824 microsatellite CV884458_ssr824:824..835. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12382 contig Csv1_Contig12382:532..1476. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884458 vs. ExPASy Swiss-Prot
Match: EF1G2_ORYSJ (Elongation factor 1-gamma 2 OS=Oryza sativa subsp. japonica GN=Os02g0220500 PE=2 SV=2)

HSP 1 Score: 367.851 bits (943), Expect = 4.880e-101
Identity = 181/261 (69.35%), Postives = 192/261 (73.56%), Query Frame = -1
Query:  162 LADIVMICNLYYGLKHIMTKTFTSEFPHVERYFWTVANQPKIKKFLGDFKQAESVPAVQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSKMILDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPEIPKFVMDECYDMELYDWKKADISDEEQKERVNQMIEDHEPFEGEALLDAKCFK 944
            LADIVM CNLY G   IMTK+FTSEFPHVERYFWT+ NQP  KK LGD KQAESVP VQ                                                  PSKMILD+WKRLYSNTK+NFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVT+NKV GFLQRMDL RKYAFGKML+IG+EPP+KVKGLWLFRGPEIPKFVMDE YDMELY+W K DISDE QKERV+ MIED EPFEGE+LLDAKCFK
Sbjct:  158 LADIVMTCNLYMGFARIMTKSFTSEFPHVERYFWTMVNQPNFKKVLGDVKQAESVPPVQKKAPPPKEQKPKEAKKEAPKEAPKPKAVEKPEEEEEAPKPKPKNPLDLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTMNKVGGFLQRMDLCRKYAFGKMLVIGSEPPFKVKGLWLFRGPEIPKFVMDEVYDMELYEWTKVDISDEAQKERVSAMIEDLEPFEGESLLDAKCFK 418          
BLAST of CV884458 vs. ExPASy Swiss-Prot
Match: EF1G1_ORYSJ (Elongation factor 1-gamma 1 OS=Oryza sativa subsp. japonica GN=Os02g0220600 PE=2 SV=1)

HSP 1 Score: 366.696 bits (940), Expect = 1.087e-100
Identity = 180/261 (68.97%), Postives = 191/261 (73.18%), Query Frame = -1
Query:  162 LADIVMICNLYYGLKHIMTKTFTSEFPHVERYFWTVANQPKIKKFLGDFKQAESVPAVQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSKMILDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPEIPKFVMDECYDMELYDWKKADISDEEQKERVNQMIEDHEPFEGEALLDAKCFK 944
            LADIVM CNLY G   IMTK FTSEFPHVERYFWT+ NQP  KK +GD KQA+SVP VQ                                                  PSKMILD+WKRLYSNTK+NFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVT+NKV GFLQRMDL RKYAFGKML+IG+EPP+KVKGLWLFRGPEIPKFVMDE YDMELY+W K DISDE QKERV+ MIED EPFEGEALLDAKCFK
Sbjct:  158 LADIVMTCNLYMGFARIMTKNFTSEFPHVERYFWTMVNQPNFKKVMGDVKQADSVPQVQKKAAAPKEQKPKEAKKEAPKEAPKPKAAEKPEEEEEAPKPKPKNPLDLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTMNKVGGFLQRMDLCRKYAFGKMLVIGSEPPFKVKGLWLFRGPEIPKFVMDEVYDMELYEWTKVDISDEAQKERVSAMIEDLEPFEGEALLDAKCFK 418          
BLAST of CV884458 vs. ExPASy Swiss-Prot
Match: EF1G3_ORYSJ (Elongation factor 1-gamma 3 OS=Oryza sativa subsp. japonica GN=Os06g0571400 PE=2 SV=1)

HSP 1 Score: 358.992 bits (920), Expect = 2.267e-98
Identity = 175/261 (67.05%), Postives = 189/261 (72.41%), Query Frame = -1
Query:  162 LADIVMICNLYYGLKHIMTKTFTSEFPHVERYFWTVANQPKIKKFLGDFKQAESVPAVQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSKMILDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPEIPKFVMDECYDMELYDWKKADISDEEQKERVNQMIEDHEPFEGEALLDAKCFK 944
            LADIVM CNLYYG   I+ K+FTSEFPHVERYFWT+ NQP  KK +GDFKQAESVP VQ                                                   SKMILD+WKRLYSNTK+NFRE+AIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVT+NKV GFLQRMDL RKYAFGKML+IG+ PP+KVKGLWLFRG +IPKFVMDE YDMELY+W K D+SDE QKERVN MIED EPFEGE LLDAKCFK
Sbjct:  158 LADIVMTCNLYYGFVRILIKSFTSEFPHVERYFWTMVNQPNFKKVIGDFKQAESVPPVQKKAAPPKESKAKEAKKEAPKEAPKPKVEASEEEEAPKPKPKNPLDLLPP--SKMILDEWKRLYSNTKTNFREIAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTMNKVGGFLQRMDLCRKYAFGKMLVIGSTPPFKVKGLWLFRGQDIPKFVMDEVYDMELYEWTKVDLSDEAQKERVNAMIEDQEPFEGEDLLDAKCFK 416          
BLAST of CV884458 vs. ExPASy Swiss-Prot
Match: EF1G_PRUAV (Elongation factor 1-gamma OS=Prunus avium PE=2 SV=1)

HSP 1 Score: 355.91 bits (912), Expect = 1.919e-97
Identity = 174/265 (65.66%), Postives = 192/265 (72.45%), Query Frame = -1
Query:  162 LADIVMICNLYYGLKHIMTKTFTSEFPHVERYFWTVANQPKIKKFLGDFKQAESVP----AVQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSKMILDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPEIPKFVMDECYDMELYDWKKADISDEEQKERVNQMIEDHEPFEGEALLDAKCFK 944
            LADI++ CNL++G   +M K+FTSEFPHVERYFWT+ NQPK KK LGD KQ ESVP    A +                                                  PS M+LDDWKRLYSNTK+NFREVAIKGFWDMYDPEGYSLWFC+YKYNDENTVSFVTLNKV GFLQRMDLARKYAFGKML+IG+EPP+KVKGLWLFRG EIP FVM+ECYDMELY+W K D+SDE QKERVNQ+IED EPFEGEALLDAKCFK
Sbjct:  158 LADIIVTCNLFFGFTKLMIKSFTSEFPHVERYFWTLVNQPKFKKVLGDVKQTESVPPVPSAKKPSQPKETKSKAKEEPKKEAKKEPAKPKAEAAEEVEEAPKPKPKNPLDLLPPSNMVLDDWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCEYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSEPPFKVKGLWLFRGQEIPPFVMEECYDMELYNWTKVDLSDENQKERVNQVIEDQEPFEGEALLDAKCFK 422          
BLAST of CV884458 vs. ExPASy Swiss-Prot
Match: EF1G1_ARATH (Probable elongation factor 1-gamma 1 OS=Arabidopsis thaliana GN=At1g09640 PE=2 SV=1)

HSP 1 Score: 349.362 bits (895), Expect = 1.796e-95
Identity = 173/261 (66.28%), Postives = 185/261 (70.88%), Query Frame = -1
Query:  162 LADIVMICNLYYGLKHIMTKTFTSEFPHVERYFWTVANQPKIKKFLGDFKQAESVPAVQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSKMILDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPEIPKFVMDECYDMELYDWKKADISDEEQKERVNQMIEDHEPFEGEALLDAKCFK 944
            LADI+ +CNL  G   +MTK FTSEFPHVERYFWTV NQP   K LGD KQ E+VP + S                                                  S M+LDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDEN VSFVTLNKV GFLQRMDLARKY+FGKMLI G+E P+KVKGLWLFRGPEIPKF+MDE YDMELY+W K DISDE QKERV+QMIED EPFEGEALLDAKCFK
Sbjct:  158 LADIITVCNLNLGFATVMTKKFTSEFPHVERYFWTVVNQPNFTKVLGDVKQTEAVPPIASKKAAQPAKPKEEPKKKEAPVAEAPKLAEEEEAPKPKAKNPLDLLPP----SPMVLDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENMVSFVTLNKVGGFLQRMDLARKYSFGKMLICGSEGPFKVKGLWLFRGPEIPKFIMDEVYDMELYEWTKVDISDEAQKERVSQMIEDAEPFEGEALLDAKCFK 414          
BLAST of CV884458 vs. ExPASy Swiss-Prot
Match: EF1G2_ARATH (Probable elongation factor 1-gamma 2 OS=Arabidopsis thaliana GN=At1g57720 PE=2 SV=1)

HSP 1 Score: 348.206 bits (892), Expect = 4.002e-95
Identity = 174/261 (66.67%), Postives = 186/261 (71.26%), Query Frame = -1
Query:  162 LADIVMICNLYYGLKHIMTKTFTSEFPHVERYFWTVANQPKIKKFLGDFKQAESVPAVQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSKMILDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPEIPKFVMDECYDMELYDWKKADISDEEQKERVNQMIEDHEPFEGEALLDAKCFK 944
            LADIV ICNL  G   +MTK FTS FPHVERYFWT+ NQP+ KK LGD KQ E+VP V +                                                  S M+LDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDEN VSFVTLNKV GFLQRMDLARKY+FGKMLI G+E P+KVKGLWLFRGPEIPKF+MDE YDMELY+W K DISDE QKERV+QMIED EPFEGEALLDAKCFK
Sbjct:  158 LADIVTICNLNLGFATVMTKKFTSAFPHVERYFWTMVNQPEFKKVLGDAKQTEAVPPVPTKKAPQPAKPKEEPKKAAPVAEAPKPAEEEEAPKPKAKNPLDLLPP-----SPMVLDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENMVSFVTLNKVGGFLQRMDLARKYSFGKMLICGSEGPFKVKGLWLFRGPEIPKFIMDEVYDMELYEWTKVDISDEAQKERVSQMIEDAEPFEGEALLDAKCFK 413          
BLAST of CV884458 vs. ExPASy Swiss-Prot
Match: EF1G_TRYCR (Elongation factor 1-gamma OS=Trypanosoma cruzi PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 7.447e-25
Identity = 61/152 (40.13%), Postives = 94/152 (61.84%), Query Frame = -1
Query:  162 SKMILDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPEIPKFVMDECYDMELYDWKK-ADISDEEQKERVNQMIEDHEPFEGEALLDAKCFK 614
            S  +LD +KR YSNT +  R VA   F+  YD  GY+ ++C YKYN++N + F+T N + G+ QRM+  RKYAFG  LIIG E  + +  LW+FRG  +P  ++++  D EL+DW++ AD++   Q+ER+   +    P     +L+ + FK
Sbjct:  265 SPFVLDAFKREYSNTDT--RTVAAPYFFQHYDAAGYTTFWCRYKYNEDNKMQFMTANLIRGWFQRMEHVRKYAFGVALIIGEERRHDIVALWVFRGRGMPA-IVEDVEDTELFDWEEVADVA--AQRERITDYLSWEGPTIPRPVLEGRVFK 411          
BLAST of CV884458 vs. ExPASy Swiss-Prot
Match: EF1G1_YEAST (Elongation factor 1-gamma 1 OS=Saccharomyces cerevisiae GN=CAM1 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 3.129e-23
Identity = 61/156 (39.10%), Postives = 89/156 (57.05%), Query Frame = -1
Query:  162 SKMILDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPE-IPKFVMDECYDMELYDWKKADISDEEQKERVNQMIEDHEPF----EGEALLDAKCFK 614
            S  +LDDWKR YSN  +  R VA+  FW+ Y+PE YSLW   YKYNDE T++F++ N V GF  R+  + KY FG +++ G      + G  + RG + +P F  D   D E YD+ K D ++++ KE +N M    +P     E + ++D K  K
Sbjct:  264 STFVLDDWKRKYSNEDT--RPVALPWFWEHYNPEEYSLWKVTYKYNDELTLTFMSNNLVGGFFNRLSASTKYMFGCLVVYGENNNNGIVGAVMVRGQDYVPAF--DVAPDWESYDYAKLDPTNDDDKEFINNMWAWDKPVSVNGEPKEIVDGKVLK 415          
BLAST of CV884458 vs. ExPASy Swiss-Prot
Match: EF1G_CARAU (Elongation factor 1-gamma OS=Carassius auratus GN=eef1g PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.970e-23
Identity = 53/144 (36.81%), Postives = 89/144 (61.81%), Query Frame = -1
Query:  189 SKMILDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPEIPKFVMDECY--DMELYDWKKADISDEEQKERVNQMIEDHEPFEGE 614
            S  ++D++KR YSN  +    VA+  FWD +D EG+S+W+ +Y++ +E T+SF++ N ++G  QR+D  RK AF  +++ G      + G+W+FRG E+  F + E +  D E Y W+K D+  EE K     M++++  +EGE
Sbjct:  291 SSFVMDEFKRKYSNEDT--LTVALPYFWDHFDREGFSIWYAEYRFPEELTMSFMSCNLITGMFQRLDKLRKNAFASVILFGANNDSCISGIWVFRGQEL-AFTLSEDWQIDYESYTWRKLDVDSEECK----TMVKEYFAWEGE 427          
BLAST of CV884458 vs. ExPASy Swiss-Prot
Match: EF1G_CAEEL (Probable elongation factor 1-gamma OS=Caenorhabditis elegans GN=F17C11.9 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.970e-23
Identity = 66/264 (25.00%), Postives = 116/264 (43.94%), Query Frame = -1
Query:  162 LADIVMICNLYYGLKHIMTKTFTSEFPHVERYFWTVANQPKIKKFLGDFKQAESVPAVQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSK--MILDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPEIP-KFVMDECYDMELYDWKKADISDEEQKERVNQMIEDHEPFEGEALLDAKCFK 944
            LAD+ +  +L    ++++         +V R+F TV NQP +K+ LG+   A SV                                                        K   +LD++KR YSN  +  +  AI  FW+ +D + +S+W C+YKY ++ T++F++ N ++G  QR++  +K AF  M++ G +    + G+W+++G ++  +   D   D E Y W K D   +  K+ VN+ +     F G+     K FK
Sbjct:  137 LADVSVALDLLPAFQYVLDANARKSIVNVTRWFRTVVNQPAVKEVLGEVSLASSVAQFNQAKFTELSAKVAKSAPKAEKPKKEAKPAAAAAQPEDDEPKEEKSKDPFQDMPKGTFVLDNFKRSYSNEDTATK--AIPHFWENFDADNWSIWKCEYKYPEDLTLAFMSCNLINGMYQRLEKLKKNAFASMILFGTDNNSTISGIWVWKGDKLAFELSPDWQVDYESYTWTKLDAKSDATKKEVNEYLMWEGDFGGKKFNQGKIFK 398          
The following BLAST results are available for this feature:
BLAST of CV884458 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
EF1G2_ORYSJ4.880e-10169.35Elongation factor 1-gamma 2 OS=Oryza sativa subsp.... [more]
EF1G1_ORYSJ1.087e-10068.97Elongation factor 1-gamma 1 OS=Oryza sativa subsp.... [more]
EF1G3_ORYSJ2.267e-9867.05Elongation factor 1-gamma 3 OS=Oryza sativa subsp.... [more]
EF1G_PRUAV1.919e-9765.66Elongation factor 1-gamma OS=Prunus avium PE=2 SV=... [more]
EF1G1_ARATH1.796e-9566.28Probable elongation factor 1-gamma 1 OS=Arabidopsi... [more]
EF1G2_ARATH4.002e-9566.67Probable elongation factor 1-gamma 2 OS=Arabidopsi... [more]
EF1G_TRYCR7.447e-2540.13Elongation factor 1-gamma OS=Trypanosoma cruzi PE=... [more]
EF1G1_YEAST3.129e-2339.10Elongation factor 1-gamma 1 OS=Saccharomyces cerev... [more]
EF1G_CARAU6.970e-2336.81Elongation factor 1-gamma OS=Carassius auratus GN=... [more]
EF1G_CAEEL6.970e-2325.00Probable elongation factor 1-gamma OS=Caenorhabdit... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003E11_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T7_E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884458 ID=CV884458; Name=CV884458; organism=Citrus sinensis; type=EST; length=944bp
AGATGTCCAATCATCCTCAAAATTGCGACAAAATTATAAGTTAATACTAT
AACACAAAATACTAGACTTCGATCTTTCTGAATTCGAAACACAAACAAAC
TCTACCAATAACAAAGACAAACATGAACATCTTAAAACTAGAAAAAAGAT
TAAGCTCATCACTTGAAGCACTTAGCATCCAAAAGAGCTTCACCCTCAAA
AGGCTCGTGATCCTCGATCATCTGGTTCACACGTTCCTTTTGCTCTTCGT
CTGAGATGTCAGCCTTCTTCCAGTCATACAATTCCATGTCATAGCACTCA
TCCATGACGAATTTAGGAATTTCTGGGCCACGGAAGAGCCACAACCCCTT
GACTTTGTATGGAGGCTCGTTGCCGATAATTAACATCTTTCCAAACGCAT
ACTTGCGAGCCAGATCCATCCTCTGAAGAAACCCACTAACCTTGTTCAAG
GTCACGAATGACACAGTATTCTCGTCATTGTATTTGTAATCACAGAACCA
AAGTGAGTAACCCTCAGGATCATACATGTCCCAGAATCCTTTAATTGCAA
CTTCACGGAAGTTGGACTTCGTGTTTGAGTAAAGCCTCTTCCAGTCATCC
AGAATCATCTTACTTGGGGGCAGCAGATCAAGAGGGTTCTTTGGTTTGGG
CTTAGGTGCTTCCTCTTCTTCAGCAGCTTCAGCTTTGGGCTTTGGTGCTT
CTTTCTTTGGTTCCGCCTTGGCCTTTGGTTTAGCAGATTCCTTAGCTTGA
GCAGGCTTCTTTGCAGACTGAACAGCTGGGACAGATTCGGCTTGCTTAAA
ATCACCCAAAAACTTCTTAATTTTTGGTTGGTTGGCCACGGTCCAAAAGT
ATCTCTCAACATGGGGAAACTCAGAGGTGAAAGTCTTCGTCATGATGTGC
TTTAATCCATAATATAAATTGCATATCATGACAATGTCAGCCAG
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