CV884453

Overview
NameCV884453
Unique NameCV884453
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1172 contig Csv1_Contig1172:59..948. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884453 vs. ExPASy Swiss-Prot
Match: RM46_PONAB (39S ribosomal protein L46, mitochondrial OS=Pongo abelii GN=MRPL46 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.181e-14
Identity = 50/139 (35.97%), Postives = 74/139 (53.24%), Query Frame = -2
Query:  305 MEYVPAPRITETDKTNDRKSLQRALDRRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSY--KQFFFKSQVIASNKFTIGKCEDFVWVTKDELMEY 715
            +++    RITE D+ NDR SL R LDR L L++  E FG    + +W  P+  ++  E+LR  AE  L ++  +     F+GNAP GH   +  + M    +   K FFFK+ ++  +    G     VWVTKDEL +Y
Sbjct:  129 LQFKLGARITEADEKNDRTSLNRKLDRNLVLLVR-EKFG---DQDVWILPQTEWQPGETLRGTAERTLATLSENNMEAKFLGNAPCGHYTFKFPQAMRTESNLGAKVFFFKALLLTGDFSQAGNKGHHVWVTKDELGDY 263          
BLAST of CV884453 vs. ExPASy Swiss-Prot
Match: RM46_HUMAN (39S ribosomal protein L46, mitochondrial OS=Homo sapiens GN=MRPL46 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.181e-14
Identity = 50/139 (35.97%), Postives = 74/139 (53.24%), Query Frame = -2
Query:  305 MEYVPAPRITETDKTNDRKSLQRALDRRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSY--KQFFFKSQVIASNKFTIGKCEDFVWVTKDELMEY 715
            +++    RITE D+ NDR SL R LDR L L++  E FG    + +W  P+  ++  E+LR  AE  L ++  +     F+GNAP GH   +  + M    +   K FFFK+ ++  +    G     VWVTKDEL +Y
Sbjct:  129 LQFKLGARITEADEKNDRTSLNRKLDRNLVLLVR-EKFG---DQDVWILPQAEWQPGETLRGTAERTLATLSENNMEAKFLGNAPCGHYTFKFPQAMRTESNLGAKVFFFKALLLTGDFSQAGNKGHHVWVTKDELGDY 263          
BLAST of CV884453 vs. ExPASy Swiss-Prot
Match: RM46_MOUSE (39S ribosomal protein L46, mitochondrial OS=Mus musculus GN=Mrpl46 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.579e-13
Identity = 47/139 (33.81%), Postives = 72/139 (51.80%), Query Frame = -2
Query:  305 MEYVPAPRITETDKTNDRKSLQRALDRRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQ--PAEKMPDVPSYKQFFFKSQVIASNKFTIGKCEDFVWVTKDELMEY 715
            +++ P  R TE DK NDR SL R LDR L L++  +     G + +W  P+  ++  E+LR  AE  L ++  +     F+GNAP GH   +   A +       K FFFK+ ++  +    GK    VW +K+EL +Y
Sbjct:  127 LQFRPGARETEADKKNDRTSLHRKLDRNLVLLVREKL----GDQDVWMLPQVEWQPGETLRGTAERILATLSENNMEAKFLGNAPCGHYKFKFPKAIQTESDLGVKVFFFKALLLTGDFVQAGKKSRHVWASKEELGDY 261          
BLAST of CV884453 vs. ExPASy Swiss-Prot
Match: RM46_RAT (39S ribosomal protein L46, mitochondrial OS=Rattus norvegicus GN=Mrpl46 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.693e-13
Identity = 47/139 (33.81%), Postives = 72/139 (51.80%), Query Frame = -2
Query:  305 MEYVPAPRITETDKTNDRKSLQRALDRRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQ--PAEKMPDVPSYKQFFFKSQVIASNKFTIGKCEDFVWVTKDELMEY 715
            +++ P  R TE DK NDR SL R LDR L L++  +     G + +W  P+  ++  E+LR  AE  L ++  +     F+GNAP GH   +   A +       K FFFK+ ++  +    GK    VW +K+EL +Y
Sbjct:  127 LQFRPGARETEADKKNDRTSLHRKLDRNLILLVREKL----GDQDLWMLPQVEWQPGETLRGTAERILATLSENNMEAKFLGNAPCGHYKFKFPKAIRTESDLGVKVFFFKALLLTGDFVQTGKKGRHVWASKEELGDY 261          
BLAST of CV884453 vs. ExPASy Swiss-Prot
Match: RM17_YEAST (54S ribosomal protein L17, mitochondrial OS=Saccharomyces cerevisiae GN=MRPL17 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.978e-12
Identity = 53/167 (31.74%), Postives = 81/167 (48.50%), Query Frame = -2
Query:  275 FLDKSNSRGKGDYQMEYVPAPRITETDKTNDRKSLQRALDRRLYLILYGETFGAPGGKPIWHFPE-KVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFFFKSQVIASNKFTI-----GKCEDFVWVTKDELMEYFPESAEFLNK 757
            F +    + K D     +P  RITE D++ND KSL+R L R LYL++  ++         W FP   + +  + L   AE  L+ + GD  +T+ V   P+G  V+Q            +F  KS ++A  KF +        EDF W+TK E+ EY P+  ++ NK
Sbjct:  124 FSNNQKEQSKDDVNRPVIPNDRITEADRSNDMKSLERQLSRTLYLLVKDKS-------GTWKFPNFDLSDESKPLHVHAENELKLLSGDQIYTWSVSATPIG--VLQDERNRT-----AEFIVKSHILA-GKFDLVASKNDAFEDFAWLTKGEISEYVPK--DYFNK 273          
BLAST of CV884453 vs. ExPASy Swiss-Prot
Match: RM46_BOVIN (39S ribosomal protein L46, mitochondrial OS=Bos taurus GN=MRPL46 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.889e-12
Identity = 44/139 (31.65%), Postives = 72/139 (51.80%), Query Frame = -2
Query:  305 MEYVPAPRITETDKTNDRKSLQRALDRRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQ--PAEKMPDVPSYKQFFFKSQVIASNKFTIGKCEDFVWVTKDELMEY 715
            +++ P  RIT+ D  NDR SL R LDR L L++  +     G + +W  P+  ++  E+LR+ AE  L ++  +     F+GNAP GH   +   A +       K FFFK+ ++  +     +    VW +K+EL +Y
Sbjct:  127 LQFKPGARITDADVKNDRSSLHRKLDRNLILLVKDKL----GDQDVWMLPQAEWQPGETLRQTAERTLATLSENNLEAKFLGNAPCGHYKFKFPQAVRAEGSLGAKIFFFKALLLTGDFSPAVEKGRHVWASKEELGDY 261          
The following BLAST results are available for this feature:
BLAST of CV884453 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
RM46_PONAB3.181e-1435.9739S ribosomal protein L46, mitochondrial OS=Pongo ... [more]
RM46_HUMAN3.181e-1435.9739S ribosomal protein L46, mitochondrial OS=Homo s... [more]
RM46_MOUSE1.579e-1333.8139S ribosomal protein L46, mitochondrial OS=Mus mu... [more]
RM46_RAT2.693e-1333.8139S ribosomal protein L46, mitochondrial OS=Rattus... [more]
RM17_YEAST2.978e-1231.7454S ribosomal protein L17, mitochondrial OS=Saccha... [more]
RM46_BOVIN3.889e-1231.6539S ribosomal protein L46, mitochondrial OS=Bos ta... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003E09_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T3_E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884453 ID=CV884453; Name=CV884453; organism=Citrus sinensis; type=EST; length=890bp
GTAACAGTCCAAAATCAGGACAAAAATTCCTGGTACCCCGCGGTCCCAAC
AAAAGGTACAGTTTTTAACCACTGAATAATGCTCTCCTATTGGTAAACTA
CTGCATAATTTTCAGTGCAATTTGAATTTCTCATCTAGATGGTCAAAAAT
TCATCCACTGGGGATAATTGCGAGATTTTGATGCAAAAACAGATTTATCT
AATTGGTTCAGAAAGCAATAAGGTGTGGCATGCACGGAAGTCAAAATAGG
ACTTGTGCATCAGCTGATGATCATCTTGTTAAGAAATTCAGCGCTCTCAG
GAAAATACTCCATGAGTTCATCCTTGGTCACCCAAACAAAATCCTCACAC
TTGCCAATTGTAAACTTGTTGCTCGCAATCACTTGAGACTTGAAGAAGAA
TTGCTTATATGATGGAACGTCTGGCATCTTTTCTGCAGGCTGCATTACCA
TATGACCCATGGGAGCATTTCCGACAAAATAAGTGTGGGAAAGGTCACCC
AGTACAGATTGTAATGCACACTCTGCACACTTGCGCAAACTCTCCTCAGA
CTCATAAACTTTTTCTGGAAAATGCCAGATAGGCTTCCCACCAGGAGCTC
CAAAAGTTTCGCCATAGAGAATAAGGTACAGTCTTCTGTCAAGTGCTCTC
TGTAATGACTTTCTATCATTTGTTTTGTCAGTTTCAGTAATCCGAGGAGC
TGGTACGTATTCCATTTGGTAGTCGCCTTTTCCTCTAGAATTAGACTTGT
CTAAAAATTCATCAGGATATCTGCGTCTGTATTGCTGTCTCCATCGAAAC
GAGAACTCCTGAAATGCGTAAACCACANGGTCAATTTTCGGAATAACAAC
AGGCAATCTCTCGAACAGAACGGACGCAACGATTTTCTCT
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