CV884452

Overview
NameCV884452
Unique NameCV884452
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length844
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884452_ssr70 microsatellite CV884452_ssr70:70..81. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CV884452 vs. ExPASy Swiss-Prot
Match: EI2BG_RAT (Translation initiation factor eIF-2B subunit gamma OS=Rattus norvegicus GN=Eif2b3 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 4.499e-15
Identity = 68/233 (29.18%), Postives = 114/233 (48.93%), Query Frame = 1
Query:  133 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVV-VEGADAALCVGGWISAAYVDRLHVEVATVPE--DVGTAGALRAIAHHLTAKXXXXXXXXXXXXXPPGA---VTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQK 813
            M+FQ VV+A G   ++  L S  +PK LLPV N+P++ Y L  LE    +++IVV  +    ALC      A +  +L  ++  +P+  D+GTA +LR    H+  K                A   V    R +DA +  ++        S     G K K K   + + IG+D T + LL +A  A+L+++  I+ SIL+   ++  +  L+DAH+Y   + V+  +++ K
Sbjct:    1 MEFQAVVMAVGGGSRMTDLTSS-IPKPLLPVGNKPLIWYPLNLLERVGFEEVIVVTTKDVQKALC------AEFKMKLKPDIVCIPDEADMGTADSLR----HIYPKLKTDVLVLGCDLITDVALHEVVDLFRAYDASLAMLMRK---GQESTEPVPGQKGKKKTVEQRDFIGVDSTGKRLLFMANEADLDEELVIKGSILQKHPRIHFQTGLVDAHLYCLKKYVVDFLMENK 219          
BLAST of CV884452 vs. ExPASy Swiss-Prot
Match: EI2BG_BOVIN (Translation initiation factor eIF-2B subunit gamma OS=Bos taurus GN=EIF2B3 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.002e-14
Identity = 66/230 (28.70%), Postives = 111/230 (48.26%), Query Frame = 1
Query:  133 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV-EGADAALCVGGWISAAYVDRLHVEVATVPE--DVGTAGALRAIAHHLTAKXXXXXXXXXXXXXPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQK 813
            M+FQ VV+A G   ++  L S  +PK LLPV N+P++ Y L  LE    +++IV+  +    ALC           ++ +++  +P+  D+GTA +LR I   L                    V    R HDA + AM+       L      G K K K   + + +G+D T + LL +A  A+L+++  I+ SIL+   ++     L+DAH+Y   + V+  +++ K
Sbjct:    1 MEFQAVVMAVGGGSRMTDLTSS-IPKPLLPVGNKPLIWYPLNLLERVGFEEVIVITTKDVQKALCAD-----FNKMKMKLDIVCIPDEADMGTADSLRHIYQKLKTDVLVLSCDLITDVALHEVVDL-FRAHDASL-AMLMRKGQESLEPV--PGQKGKKKAVEQRDFVGVDSTGKRLLFMANEADLDEELIIKGSILQKHPRIRFHTGLVDAHLYCLKKYVVDFLMENK 220          
BLAST of CV884452 vs. ExPASy Swiss-Prot
Match: EI2BG_MACFA (Translation initiation factor eIF-2B subunit gamma OS=Macaca fascicularis GN=EIF2B3 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.233e-14
Identity = 66/228 (28.95%), Postives = 110/228 (48.25%), Query Frame = 1
Query:  133 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVV-VEGADAALCVGGWISAAYVDRLHVEVATVPE--DVGTAGALRAIAHHLTAKXXXXXXXXXXXXXPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD 807
            M+FQ VV+A G   ++  L S  +PK LLP  N+P++ Y L  LE    +++IVV       ALC      A +  ++  ++  +P+  D+GTA +LR +   L                    V    R +DA + AM+       L      G K K K   + + IG+D T + LL +A  A+L+++  I+ SIL+   ++    DL+DAH+Y   + V+  +++
Sbjct:    1 MEFQAVVMAVGGGSRMTDLTSS-IPKPLLPAGNKPLIWYPLNLLERVGFEEVIVVTTRDVQKALC------AEFKMKMKPDIVCIPDDADMGTADSLRYMYPKLKT-DVLVLSCDLITDVALHEVVDLFRAYDASL-AMLMRKGQDSLEPV--PGQKGKKKAVEQRDFIGVDSTGKRLLFMANEADLDEELVIKGSILQKYPRIRFHTDLVDAHLYCLKKYVVDFLME 217          
BLAST of CV884452 vs. ExPASy Swiss-Prot
Match: EI2BG_HUMAN (Translation initiation factor eIF-2B subunit gamma OS=Homo sapiens GN=EIF2B3 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.485e-14
Identity = 65/228 (28.51%), Postives = 110/228 (48.25%), Query Frame = 1
Query:  133 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVV-VEGADAALCVGGWISAAYVDRLHVEVATVPE--DVGTAGALRAIAHHLTAKXXXXXXXXXXXXXPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD 807
            M+FQ VV+A G   ++  L S  +PK LLPV N+P++ Y L  LE    +++IVV       ALC      A +  ++  ++  +P+  D+GTA +LR I   L                    V    R +DA + AM+       +      G K K K   + + IG+D T + LL +A  A+L+++  I+ SIL+   ++     L+DAH+Y   + ++  +++
Sbjct:    1 MEFQAVVMAVGGGSRMTDLTSS-IPKPLLPVGNKPLIWYPLNLLERVGFEEVIVVTTRDVQKALC------AEFKMKMKPDIVCIPDDADMGTADSLRYIYPKLKT-DVLVLSCDLITDVALHEVVDLFRAYDASL-AMLMRKGQDSIEPV--PGQKGKKKAVEQRDFIGVDSTGKRLLFMANEADLDEELVIKGSILQKHPRIRFHTGLVDAHLYCLKKYIVDFLME 217          
BLAST of CV884452 vs. ExPASy Swiss-Prot
Match: EI2BG_DICDI (Translation initiation factor eIF-2B subunit gamma OS=Dictyostelium discoideum GN=eif2b3 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.108e-13
Identity = 58/237 (24.47%), Postives = 113/237 (47.68%), Query Frame = 1
Query:  139 FQVVVLA---GGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIK---DLIVVVEGADAALCVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKXXXXXXXXXXXXXP-PGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRY-NIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVL-DQKDKF 822
            FQVV+LA      + KL P +   +P +LLP+ANRP++SY LE LE +  +   + +++V    +   +  ++S  Y  ++ VE   + + + T   L  I   +  +                  +   HR+ ++ +T ++   P   + + G    +  TK+   + + I ++   Q ++ +    E+E+D    KS+L+    + I  +L D  +Y F+R VL  ++ DQK+K+
Sbjct:    6 FQVVILATDKASGNSKLEP-IDATIPHSLLPIANRPLISYQLEFLEKAGFETKSEPVIIVVNETSQEKIKQYVSEIYKGKIEVEFFVLKDQLATCEILYRIRDKIRLEYFMVLNANLVLEDTFIRQMADLHRKEESSLTVLL-KPPTPKVEQKGKGATETSTKQDKLFTDYIALEEKSQKIVMMEPATEVEEDLNFNKSLLKYFPNVTIYTNLQDTQLYIFSRWVLDLIIEDQKEKY 240          
The following BLAST results are available for this feature:
BLAST of CV884452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
EI2BG_RAT4.499e-1529.18Translation initiation factor eIF-2B subunit gamma... [more]
EI2BG_BOVIN1.002e-1428.70Translation initiation factor eIF-2B subunit gamma... [more]
EI2BG_MACFA2.233e-1428.95Translation initiation factor eIF-2B subunit gamma... [more]
EI2BG_HUMAN8.485e-1428.51Translation initiation factor eIF-2B subunit gamma... [more]
EI2BG_DICDI1.108e-1324.47Translation initiation factor eIF-2B subunit gamma... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003E07_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T7_E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884452 ID=CV884452; Name=CV884452; organism=Citrus sinensis; type=EST; length=844bp
CTGATTGCGTATCACTCAGGATTACGGCCTCAACCTCAACCATTTGATAT
ATATAACGAAATAATTAAGTAATTAATTAATTTTTTTTTTTAAAAGAAAG
ATTCAGATTCAGAGAGAAGAGAAAAAGGGGGGATGGATTTCCAAGTGGTG
GTGTTGGCTGGTGGCACTTCAAAGAAATTAGTTCCGCTGGTGTCTAAGGA
GGTGCCAAAAGCCCTACTTCCGGTGGCCAATCGACCGGTTCTCTCATACG
TGTTGGAGCAGTTAGAGCTCAGCAATATTAAGGATCTCATAGTTGTTGTT
GAAGGGGCAGACGCCGCTCTCTGTGTCGGTGGTTGGATTTCAGCAGCTTA
TGTTGATCGTCTACATGTCGAGGTTGCTACAGTCCCTGAGGATGTTGGAA
CTGCTGGTGCGCTCCGGGCTATTGCTCATCACTTGACTGCAAAAGATGTT
TTGGTTGTGAGTGGTGATCTTGTTTCTGATGTTCCGCCGGGTGCAGTTAC
GGCTGCTCATAGACGACATGACGCTGTGGTGACTGCAATGATTTGCTCTG
TTCCTGTTAGCGGCCTATCGGAGGCAGGATCATCTGGTGCAAAAGACAAA
ACCAAGAAACCCGGGCGCTACAACATTATAGGAATGGACCCCACAAAGCA
ATTTCTGTTACACATAGCTACAGGGGCTGAACTTGAGAAAGATACTCGAA
TTCGAAAGAGCATTCTCCGTGCTGTTGGGCAGATGGATATTCGAGCTGAT
TTAATGGATGCCCATATGTACGCATTCAATAGATCTGTTCTGCAAGAGGT
TCTAGATCAGAAGGATAAATTTCAAAGCTTAAAACAGGATGTTC
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