CV884451

Overview
NameCV884451
Unique NameCV884451
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length798
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6354 contig Csv1_Contig6354:244..1041. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884451 vs. ExPASy Swiss-Prot
Match: EI2BG_DICDI (Translation initiation factor eIF-2B subunit gamma OS=Dictyostelium discoideum GN=eif2b3 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.536e-17
Identity = 45/128 (35.16%), Postives = 72/128 (56.25%), Query Frame = -1
Query:  418 RTHKCCVYIASNSKYCVRLNSIQAFMDINRDVI-GEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSXXXXXXXXXXXXVTIGDGCSIQGSVICSNAQLQ 798
            +T KC  ++     YC+ +N+I+ +  INRD+  G+  +L     S +N  I P+A + + T VGP C++G  + +G KCSVK S+IG+HC+IG             V I D C I  S+IC++  ++
Sbjct:  302 KTIKCFAHLLKKEGYCMNVNTIKNYQQINRDIAKGDLQYLPNEPKSEKNFFIDPTANV-TITQVGPQCVIGTSTTLGAKCSVKFSIIGKHCKIGDGVRIENSIIMDHVIIEDRCVINSSIICNDVYIK 428          
BLAST of CV884451 vs. ExPASy Swiss-Prot
Match: EI2BG_RAT (Translation initiation factor eIF-2B subunit gamma OS=Rattus norvegicus GN=Eif2b3 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.884e-16
Identity = 48/156 (30.77%), Postives = 83/156 (53.21%), Query Frame = -1
Query:  322 KCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSXXXXXXXXXXXXVTIGDGCSIQGSVICSNAQLQERVALKDCQVGLGYVVSAGCEYKGESLARKEK 789
            +C V+I      C R++++  +M+ NR V    + L       + ++IHPSA++ +K  +G   ++G  +Q+G+K S+KRSVIG  C I              VT+ +G SI GSVIC+NA ++    ++DC +G G  + A  +   E +   ++
Sbjct:  299 RCYVHIMKEG-LCSRVSTLGLYMEANRQVPKLLSVLC-----PEESMIHPSAQIANKHLIGADSLIGSDTQVGEKSSIKRSVIGSSCVIRDRVTVTNCLLMNSVTVEEGSSIHGSVICNNAVVEAGAEIRDCLIGSGQRIEAKAKRMNEVIVGNDQ 448          
BLAST of CV884451 vs. ExPASy Swiss-Prot
Match: EI2BG_MACFA (Translation initiation factor eIF-2B subunit gamma OS=Macaca fascicularis GN=EIF2B3 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.856e-15
Identity = 49/156 (31.41%), Postives = 83/156 (53.21%), Query Frame = -1
Query:  322 KCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSXXXXXXXXXXXXVTIGDGCSIQGSVICSNAQLQERVALKDCQVGLGYVVSAGCEYKGESLARKEK 789
            +C V+I      C R++++  +M+ NR V    + L       +  ++H SA++ SK  VG   ++G  +Q+G+K S+KRSVIG  C I              VT+ +G +IQGSVIC+NA +++   +KDC +G G  + A  +   E +   ++
Sbjct:  299 RCYVHIMKEG-LCSRVSTLGLYMEANRQVPKLLSALC-----PEEPLVHSSAQIVSKHLVGVDSLIGPETQIGEKSSIKRSVIGSSCLIKDRVTITNCLLMNSVTVEEGSNIQGSVICNNAVIEKGADIKDCLIGSGQRIEAKAKRVNEVIVGSDQ 448          
BLAST of CV884451 vs. ExPASy Swiss-Prot
Match: EI2BG_HUMAN (Translation initiation factor eIF-2B subunit gamma OS=Homo sapiens GN=EIF2B3 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.053e-15
Identity = 49/156 (31.41%), Postives = 82/156 (52.56%), Query Frame = -1
Query:  322 KCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSXXXXXXXXXXXXVTIGDGCSIQGSVICSNAQLQERVALKDCQVGLGYVVSAGCEYKGESLARKEK 789
            +C V+I      C R++++  +M+ NR V    + L       +   +H SA++ SK  VG   ++G  +Q+G+K S+KRSVIG  C I              VT+ +G +IQGSVIC+NA +++   +KDC +G G  + A  +   E +   ++
Sbjct:  299 RCYVHIMKEG-LCSRVSTLGLYMEANRQVPKLLSALC-----PEEPPVHSSAQIVSKHLVGVDSLIGPETQIGEKSSIKRSVIGSSCLIKDRVTITNCLLMNSVTVEEGSNIQGSVICNNAVIEKGADIKDCLIGSGQRIEAKAKRVNEVIVGNDQ 448          
BLAST of CV884451 vs. ExPASy Swiss-Prot
Match: EI2BG_BOVIN (Translation initiation factor eIF-2B subunit gamma OS=Bos taurus GN=EIF2B3 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.622e-13
Identity = 43/142 (30.28%), Postives = 76/142 (53.52%), Query Frame = -1
Query:  364 KCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSXXXXXXXXXXXXVTIGDGCSIQGSVICSNAQLQERVALKDCQVGLGYVVSA 789
            +C V+I      C R++++  +M+ NR V      +       + ++IH SA++ SK  VG   ++G  +Q+G+K S+K SVIG  C I              VT+ +G +IQ S+IC++A +++   +K+C +G G  + A
Sbjct:  300 RCYVHIMKEG-LCSRVSTLGLYMEANRQVSKLLPVIC-----PEESLIHSSAQIVSKHMVGADSLIGPDTQVGEKSSIKHSVIGSSCVIRDRVTVTNCLLMNSVTVEEGSNIQSSIICNDAVIEKGADIKNCLIGSGQRIEA 435          
BLAST of CV884451 vs. ExPASy Swiss-Prot
Match: EI2BG_SCHPO (Probable translation initiation factor eIF-2B subunit gamma OS=Schizosaccharomyces pombe GN=tif223 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.626e-11
Identity = 36/151 (23.84%), Postives = 74/151 (49.01%), Query Frame = -1
Query:  322 IASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSXXXXXXXXXXXXVTIGDGCSIQGSVICSNAQLQERVALKDCQVGLGYVVSAGCEYKGESLARKEK 774
            IA +   C R N++  + ++N+ +            + +  ++     +  +  VG  CM+ EG+ + D  ++K+S+IG++C IG             + + DG  ++  ++ S AQ+  +  L++C++G+ + V AG   +GE L   EK
Sbjct:  323 IAKDGIICSRANNLPNYFELNKCIA---------KLTPEQRLV--DVTVSERALVGADCMVNEGTTIKDNSNIKKSIIGKNCVIGKGVVVSNSILMDNIVVEDGVRLESCIVASGAQIGAKSKLRECEIGVDHRVEAGRIARGERLVDMEK 462          
The following BLAST results are available for this feature:
BLAST of CV884451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
EI2BG_DICDI7.536e-1735.16Translation initiation factor eIF-2B subunit gamma... [more]
EI2BG_RAT4.884e-1630.77Translation initiation factor eIF-2B subunit gamma... [more]
EI2BG_MACFA1.856e-1531.41Translation initiation factor eIF-2B subunit gamma... [more]
EI2BG_HUMAN7.053e-1531.41Translation initiation factor eIF-2B subunit gamma... [more]
EI2BG_BOVIN8.622e-1330.28Translation initiation factor eIF-2B subunit gamma... [more]
EI2BG_SCHPO1.626e-1123.84Probable translation initiation factor eIF-2B subu... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003E07_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T3_E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884451 ID=CV884451; Name=CV884451; organism=Citrus sinensis; type=EST; length=798bp
TTTTTTTTTTTTTTTTTGCTGCAAGAAAAATGCTTCATTTTCAGTTCTTA
ATAAATTTGAACATCTTTCTGTGAGGAGATGACAAAATTGGTATTCTACA
AATCTCGTCGTCTGTGTCACTAGAATACATGGAATAACCTCGATCAGATA
CAAGCAACGCAACAATTTAGTTACAATAACTCAACAGAAAGCCAGAATGA
CACTATCTAGGATCCGCATTTCTCTTGCCTTGCCATGTATGAAACCGCCA
GCAGTTAACCGAAAAACAAAAATGATAAAACATGCTGCAAGAATAACATG
ACTCATTGACATTGGTATTCATTTCTCTTTTCTGGCCAAGGACTCTCCCT
TGTACTCACAGCCTGCAGAAACCACATAACCTAGTCCAACTTGACAATCT
TTCAGTGCAACACGCTCTTGGAGCTGTGCATTGCTGCAAATCACAGAACC
TTGGATTGAACAACCATCTCCAATGGTAACATGATTCATCACAACTGAAT
TAACAACCTTTACATTTGAACCTATCCGGCAGTGGCGGCCAATTACAGAT
CGTTTTACACTACATTTGTCACCCATTTGTGAACCCTCCCCCAGCATACA
ATGTGGTCCCACAGTAGTTTTAGATCCAAGCTCTGCCGAAGGATGAATAA
TGTTATTCTGAGCAGAGAAGTTATAACCTGACAGATGGTTTGCCTCACCT
ATGACATCCCGATTGATGTCCATAAATGCTTGAATGGAATTTAACCGCAC
ACAGTACTTGCTGTTGCTGGCAATGTAAACACAGCATTTATGGGTTCT
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