CV884446

Overview
NameCV884446
Unique NameCV884446
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length918
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884446 vs. ExPASy Swiss-Prot
Match: C3H66_ARATH (Zinc finger CCCH domain-containing protein 66 OS=Arabidopsis thaliana GN=At5g58620 PE=2 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 7.305e-78
Identity = 144/235 (61.28%), Postives = 183/235 (77.87%), Query Frame = 2
Query:  215 FSILLELTASDDLDGFRKAIEEDG-HDIDESGLWYGRIIGSRKMGFEERTPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDASADVNSVDAYGNRPADLIAKNCNLGFNSRKKVLQALLKGSGTGCVEEIDNLCDQVVYKMEEQEQPEISTPRVLKDGAEKKEYPVDLTLPDIKNGIYGTDEFRMYTFKVQPCSRAYSHDWTECPFVHP 916
            FS+LLE +A +DL GF+  +EE+G   ID SGLWYGR +GS+KMGFEERTPLMIA++FGSK+VV Y+I +G VDVNR+CGSDG TALHCA SG SANS+E+V LLL  SA+ +S DAYGN+P D+I    +  F++R KVL+ LLKG+     ++++ +  Q   + E + + E+S PR    G+E+KEYPVD TLPDIKNG+YGTDEFRMY FK++PCSRAYSHDWTECPFVHP
Sbjct:   11 FSLLLESSACNDLSGFKSLVEEEGLESIDGSGLWYGRRLGSKKMGFEERTPLMIAALFGSKEVVDYIISTGLVDVNRSCGSDGATALHCAVSGLSANSLEIVTLLLKGSANPDSCDAYGNKPGDVIFPCLSPVFSARMKVLERLLKGN-----DDLNEVNGQEESEPEVEVEVEVSPPR----GSERKEYPVDPTLPDIKNGVYGTDEFRMYAFKIKPCSRAYSHDWTECPFVHP 236          
BLAST of CV884446 vs. ExPASy Swiss-Prot
Match: C3H47_ARATH (Zinc finger CCCH domain-containing protein 47 OS=Arabidopsis thaliana GN=At3g55980 PE=2 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 4.911e-66
Identity = 128/263 (48.67%), Postives = 174/263 (66.16%), Query Frame = 2
Query:  128 MCSGLKRKPTQTGFIMDTDSQKQDGLCYNFSILLELTASDDLDGFRKAIEEDGHDIDESGLWYGRIIGSRKMGFEERTPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDASADVNSVDAYGNRPADLIAKNCNLGFNSRKKVLQALLKGSGTGCVEEIDNLCDQVVYKMEEQEQPEISTPRVLKDGAEKKEYPVDLTLPDIKNGIYGTDEFRMYTFKVQPCSRAYSHDWTECPFVHP 916
            MCSG K     +  + + +S++++       +LLE  A DDLD F++ +EE G D+DESGLWY R +GS+KMG EERTPLM+A+M+GS  V+++++ +G  DVNRACG + VT LHCA +G S N +EV+ +LLDASA VNSVDA GN+P D+  +      + R+K ++ LL+G G G       L D+ V    E+E   +S            +YP D +LPDI  G+YG+DEFRMY+FKV+PCSRAYSHDWTEC FVHP
Sbjct:    1 MCSGPKSNLCSSRTLTEIESRQKEE---ETMLLLEFAACDDLDSFKREVEEKGLDLDESGLWYCRRVGSKKMGLEERTPLMVAAMYGSIKVLTFIVSTGKSDVNRACGEERVTPLHCAVAGCSVNMIEVINVLLDASALVNSVDANGNQPLDVFVRVSRFVASPRRKAVELLLRGGGVG------GLIDEAV----EEEIKIVS------------KYPADASLPDINEGVYGSDEFRMYSFKVKPCSRAYSHDWTECAFVHP 238          
BLAST of CV884446 vs. ExPASy Swiss-Prot
Match: C3H29_ARATH (Zinc finger CCCH domain-containing protein 29 OS=Arabidopsis thaliana GN=At2g40140 PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 1.024e-63
Identity = 122/232 (52.59%), Postives = 157/232 (67.67%), Query Frame = 2
Query:  224 LLELTASDDLDGFRKAIEEDGH-DIDESGLWYGRIIGSRKMGFEERTPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDASADVNSVDAYGNRPADLIAKNCNLGFNSRKKVLQALLKGSGTGCVEEIDNLCDQVVYKMEEQEQPEISTPRVLKDGAEKKEYPVDLTLPDIKNGIYGTDEFRMYTFKVQPCSRAYSHDWTECPFVHP 916
            LLE  A DDL  F++ IEE+   +IDESG WY R +GS+KMGFEERTPLM+A+M+GS +V++Y+I +G  DVNR C  + VTALHCA SG S + VE++K+LLDASA  N VDA GN+P DL+AK+     N  +K ++ LL G     +EE            EE+E   + T           +YP D +LPDI  G+YGTD+FRM++FKV+PCSRAYSHDWTECPFVHP
Sbjct:   33 LLEFAACDDLSSFKREIEENPSVEIDESGFWYCRRVGSKKMGFEERTPLMVAAMYGSMEVLNYIIATGRSDVNRVCSDEKVTALHCAVSGCSVSIVEIIKILLDASASPNCVDANGNKPVDLLAKDSRFVPNQSRKAVEVLLTGIHGSVMEE------------EEEELKSVVT-----------KYPADASLPDINEGVYGTDDFRMFSFKVKPCSRAYSHDWTECPFVHP 241          
BLAST of CV884446 vs. ExPASy Swiss-Prot
Match: C3H30_ARATH (Zinc finger CCCH domain-containing protein 30 OS=Arabidopsis thaliana GN=At2g41900 PE=1 SV=2)

HSP 1 Score: 231.876 bits (590), Expect = 4.027e-60
Identity = 123/246 (50.00%), Postives = 156/246 (63.41%), Query Frame = 2
Query:  215 FSILLELTASDDLDGFRKAIEEDGHDIDESGLWYGRIIGSRKMGFEERTPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDASADVNSVDAYGNRPADLIAKNCNLGFNSRKKVLQALLKGSGTGCVEEIDNLCDQVVYKMEEQ------------EQPEISTPRVLKDGAEKKEYPVDLTLPDIKNGIYGTDEFRMYTFKVQPCSRAYSHDWTECPFVHP 916
            F+ LLEL A++D++G R +IE D   +DE+GLWYGR  GS+ M  + RTPLM+A+ +GS DV+  ++     DVNRACG+D  TALHCAASGG+ N+++VVKLLL A AD+N +DA G R  D+I     L     K +LQ LL   G+   E    +   V  +                    + +P  LK    KKEYPVD +LPDIKN IY TDEFRMY+FKV+PCSRAYSHDWTECPFVHP
Sbjct:   45 FASLLELAANNDVEGVRLSIERDPSCVDEAGLWYGRQKGSKAMVNDYRTPLMVAATYGSIDVIKLIVSLTDADVNRACGNDQTTALHCAASGGAVNAIQVVKLLLAAGADLNLLDAEGQRAGDVIVVPPKL--EGVKLMLQELLSADGSSTAERNLRVVTNVPNRSSSPCHSPTGENGGSGSGSPLGSPFKLKSTEFKKEYPVDPSLPDIKNSIYATDEFRMYSFKVRPCSRAYSHDWTECPFVHP 288          
BLAST of CV884446 vs. ExPASy Swiss-Prot
Match: C3H24_ORYSJ (Zinc finger CCCH domain-containing protein 24 OS=Oryza sativa subsp. japonica GN=Os03g0698800 PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 8.689e-55
Identity = 126/251 (50.20%), Postives = 162/251 (64.54%), Query Frame = 2
Query:  215 FSILLELTASDDLDGFRKAIEE-DGHDIDESGLWYGRIIGSRKMGFEERTPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDASADVNSVDAYGNRPADLIAKNCNLGFNSRKKVLQALL--KGSGTGCVEEIDNLCDQVVYKM-----EEQEQPEIST---------PRVLKDGAEKKEYPVDLTLPDIKNGIYGTDEFRMYTFKVQPCSRAYSHDWTECPFVHP 916
            F+ LLEL A DD +G R+A+E       DE+GLWYGR    RK+  E RTPLM+A+ +GS  V+  ++    VDVNR CGSDG TALHCAASGGS + VE VKLLL A AD ++ DA G RPAD+I+    + F++ K  LQ LL    +G G +  +    + ++  +     E+   P  +          PRV+   +EKKEYPVD +LPDIKN IY +DEFRMY+FK++PCSRAYSHDWTECPFVHP
Sbjct:   67 FAGLLELAADDDAEGLRRALERAPPAAADEAGLWYGR----RKV-LEHRTPLMVAATYGSLAVLRLLLSLPSVDVNRRCGSDGTTALHCAASGGSPSCVEAVKLLLAAGADADATDASGYRPADVISVPPKM-FDA-KIALQDLLGCPKAGHGVLRVVTRAANSMLSPVSSPTAEDARSPSAAVMMTTKFADLPRVVT--SEKKEYPVDPSLPDIKNSIYASDEFRMYSFKIRPCSRAYSHDWTECPFVHP 308          
BLAST of CV884446 vs. ExPASy Swiss-Prot
Match: C3H56_ARATH (Zinc finger CCCH domain-containing protein 56 OS=Arabidopsis thaliana GN=At5g12850 PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 3.651e-53
Identity = 109/249 (43.78%), Postives = 155/249 (62.25%), Query Frame = 2
Query:  209 YNFSILLELTASDDLDGFRKAIEEDGHDIDESGLWYGRIIGSRKMGFEERTPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDASADVNSVDAYGNRPADLIAKNCNL-GFNS-------RKKVLQALLKGSGTGCVEEIDNLCD-----QVVYKMEEQEQPEISTPRVLKDGAEKKEYPVDLTLPDIKNGIYGTDEFRMYTFKVQPCSRAYSHDWTECPFVHP 916
            ++FS LLE  A +D++GFR+ +  D   I++ GLWY R    R+M  E+RTPLM+AS++GS DVV +++     ++N +CG D  TALHCAASG S NS++VVKLLL   AD N  DA+GNRP D++  + +  G  +       + +++   L  S +       +L         +  ++    P       +   +EKKEYP+D +LPDIK+GIY TDEFRM++FK++PCSRAYSHDWTECPF HP
Sbjct:   37 HSFSALLEFAADNDVEGFRRQLS-DVSCINQMGLWYRRQRFVRRMVLEQRTPLMVASLYGSLDVVKFILSFPEAELNLSCGPDKSTALHCAASGASVNSLDVVKLLLSVGADPNIPDAHGNRPVDVLVVSPHAPGLRTILEEILKKDEIISEDLHASSSSLGSSFRSLSSSPDNGSSLLSLDSVSSPTKPHGTDVTFASEKKEYPIDPSLPDIKSGIYSTDEFRMFSFKIRPCSRAYSHDWTECPFAHP 284          
BLAST of CV884446 vs. ExPASy Swiss-Prot
Match: C3H50_ORYSJ (Zinc finger CCCH domain-containing protein 50 OS=Oryza sativa subsp. japonica GN=Os07g0568300 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 4.177e-49
Identity = 117/244 (47.95%), Postives = 146/244 (59.84%), Query Frame = 2
Query:  224 LLELTASDDLDGFRKAIEEDGHDI----DESGLWYGRIIGSRKMGFEERTPLMIASMFGSKDVVSYVIK-SGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDASADVNSVDAYGNRPADLI----AKNCNLG----FNSRKKVLQALLKGSGTGCVEEIDNLCDQVVYKMEEQEQPEISTPRVLKDGAEKKEYPVDLTLPDIKNGIYGTDEFRMYTFKVQPCSRAYSHDWTECPFVHP 916
            LLEL A+DD+DG R A+ E G +     D  GLWYGR        +E RTPLM+A+ +GS  VVS ++   G VDVNR  G+DG TALHCAASGGS N+V VVKLLL A AD  + D+ G  PAD+I    A    LG       R++ L      +       + +  D+         +    +P  +  G  KKEYPVD TLPDIK+ +Y +DEFRM+ FKV+PCSRAYSHDWTECPFVHP
Sbjct:   27 LLELAAADDVDGLRGALAEGGEEAAELADGVGLWYGR-----SKAYEARTPLMVAATYGSAGVVSLLVGLGGCVDVNRRPGADGATALHCAASGGSRNAVAVVKLLLAAGADPATPDSAGRFPADVILAPPASPDALGDLEVLLGRRRALAVATSVASGSSSPPLSSSPDE--GNRSPSSRSSSLSPITVDRG--KKEYPVDPTLPDIKSSVYASDEFRMFAFKVRPCSRAYSHDWTECPFVHP 261          
BLAST of CV884446 vs. ExPASy Swiss-Prot
Match: C3H33_ORYSJ (Zinc finger CCCH domain-containing protein 33 OS=Oryza sativa subsp. japonica GN=Os05g0128200 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 9.305e-49
Identity = 108/264 (40.91%), Postives = 151/264 (57.20%), Query Frame = 2
Query:  128 MCSGLKRKPTQTGFIMDTDSQKQDGLCYNFSILLELTASDDLDGFRKAIEEDGHDIDESGLWYG-RIIGSRKMGFEERTPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDASADVNSVDAYGNRPADLIAKNCNLGFNSRKKVLQALLKGSGTGCVEEIDNLCDQVVYKMEEQEQPEISTPRVLKDGAEKKEYPVDLTLPDIKNGIYGTDEFRMYTFKVQPCSRAYSHDWTECPFVHP 916
            MCSG  RKP+          Q+++      S+LLEL A+DD+   R+ +EE+   +  +GLWYG    G  ++G E RT  M+A+++GS  V+ YV+ +   +  RA  +DG T LH AA+GG+AN+V   +LLL A A V+++ A G R  DL+ +       + +K ++ LLK                         +   S P        KKEYP DLTLPD+K+G++ TDEFRMY+FKV+PCSRAYSHDWTECPFVHP
Sbjct:    1 MCSG-PRKPSTPPL----PQQQKEATVMAASLLLELAAADDVAAVRRVVEEEKVSLGVAGLWYGPSASGVARLGMERRTAAMVAALYGSTGVLGYVVAAAPAEAARASETDGATPLHMAAAGGAANAVAATRLLLAAGASVDALSASGLRAGDLLPRA-----TAAEKAIRLLLKSPAVS---------------PSSSPKKSASPPSPPPPQEAKKEYPPDLTLPDLKSGLFSTDEFRMYSFKVKPCSRAYSHDWTECPFVHP 239          
BLAST of CV884446 vs. ExPASy Swiss-Prot
Match: C3H67_ORYSJ (Zinc finger CCCH domain-containing protein 67 OS=Oryza sativa subsp. japonica GN=Os12g0515500 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.815e-29
Identity = 88/232 (37.93%), Postives = 114/232 (49.14%), Query Frame = 2
Query:  224 LLELTASDDLDGFRKAIEEDGHDIDESGLWYGRIIGSRKMGFEERTPLMIASMFGSKDVVSYVIKSGH-VDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDASADVNSVDAYGNRPADLIAKNCNLGFNSRKKVLQALLKGSGTGCVEEIDNLCDQVVYKMEEQEQPEISTPRVLKDGAEKKEYPVDLTLPDIKNGIYGTDEFRMYTFKVQPCSRAYSHDWTECPFVHP 916
            LLEL A D+  G  + +       DE   WY     +   G E  TPLM+A+++GS   +  ++   + VD NRA  S   T LH AA+GGSA++   V  LL A AD   +D    R +DL+A   N      K  L +LL                                         +KE+P D +LPDIKNG Y +D+FRMY+FKV+ CSRAYSHDWTECPFVHP
Sbjct:   15 LLELAADDNAAGLGELLAAWPSLADEPAPWY-----TPARGAEPLTPLMVAAVYGSVGCLDALLSPPYLVDPNRASASSLSTPLHLAAAGGSASAPAAVSRLLAAGADPALLDHLQRRASDLVALPPNS--LPLKNHLLSLL---------------------------------------GARKEWPPDPSLPDIKNGAYASDDFRMYSFKVRACSRAYSHDWTECPFVHP 200          
BLAST of CV884446 vs. ExPASy Swiss-Prot
Match: C3H54_ARATH (Zinc finger CCCH domain-containing protein 54 OS=Arabidopsis thaliana GN=PEI1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.897e-11
Identity = 25/45 (55.56%), Postives = 35/45 (77.78%), Query Frame = 2
Query:  779 YPVDLTLPDIKNGIYGTDEFRMYTFKVQPCSRAYSHDWTECPFVH 913
            Y +D ++P+I + IYG+DEFRMY +K++ C R  SHDWTECP+ H
Sbjct:   34 YEIDPSIPNIDDAIYGSDEFRMYAYKIKRCPRTRSHDWTECPYAH 78          
The following BLAST results are available for this feature:
BLAST of CV884446 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
C3H66_ARATH7.305e-7861.28Zinc finger CCCH domain-containing protein 66 OS=A... [more]
C3H47_ARATH4.911e-6648.67Zinc finger CCCH domain-containing protein 47 OS=A... [more]
C3H29_ARATH1.024e-6352.59Zinc finger CCCH domain-containing protein 29 OS=A... [more]
C3H30_ARATH4.027e-6050.00Zinc finger CCCH domain-containing protein 30 OS=A... [more]
C3H24_ORYSJ8.689e-5550.20Zinc finger CCCH domain-containing protein 24 OS=O... [more]
C3H56_ARATH3.651e-5343.78Zinc finger CCCH domain-containing protein 56 OS=A... [more]
C3H50_ORYSJ4.177e-4947.95Zinc finger CCCH domain-containing protein 50 OS=O... [more]
C3H33_ORYSJ9.305e-4940.91Zinc finger CCCH domain-containing protein 33 OS=O... [more]
C3H67_ORYSJ2.815e-2937.93Zinc finger CCCH domain-containing protein 67 OS=O... [more]
C3H54_ARATH5.897e-1155.56Zinc finger CCCH domain-containing protein 54 OS=A... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003E04_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T7_E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884446 ID=CV884446; Name=CV884446; organism=Citrus sinensis; type=EST; length=918bp
CAAGCTAACCTTTTAGGCCTGCTAATTGCCAAGCCGAAGTGCAGTTTGGA
AATTCTTTTTTTTTCCCTTCGCCAACTTAAAGAGAGGTGAAACTTTTAAT
TGGAGGTCTGAGAAGAAAGAGATTTCCATGTGCAGTGGTTTAAAGAGGAA
ACCAACACAAACGGGTTTCATCATGGATACTGATTCTCAGAAGCAAGATG
GTTTGTGTTATAATTTTTCAATTTTGCTTGAACTGACTGCCTCAGATGAT
TTAGATGGGTTTAGAAAGGCAATTGAAGAAGATGGTCATGATATTGATGA
GTCGGGTTTGTGGTATGGTAGGATTATTGGTTCGAGAAAGATGGGGTTTG
AGGAAAGAACGCCCCTCATGATTGCTTCTATGTTTGGAAGCAAAGATGTG
GTTAGTTATGTCATTAAATCTGGCCATGTTGATGTTAATAGGGCTTGTGG
TTCGGATGGGGTCACGGCTTTGCACTGTGCTGCATCCGGTGGCTCTGCTA
ATTCAGTTGAAGTTGTCAAACTCTTGCTTGATGCTTCTGCTGACGTCAAT
TCTGTTGATGCTTATGGAAACCGGCCTGCCGATTTGATTGCCAAGAATTG
TAATTTGGGTTTCAATTCAAGGAAGAAGGTTTTGCAGGCTTTGTTGAAAG
GCAGTGGTACTGGTTGTGTTGAAGAAATCGACAATCTGTGTGATCAAGTA
GTTTATAAAATGGAGGAGCAAGAACAGCCAGAGATTTCAACACCTCGGGT
ATTGAAAGATGGAGCTGAGAAGAAAGAGTATCCAGTTGATCTCACTCTTC
CAGATATTAAGAATGGGATATACGGGACAGACGAATTTCGGATGTATACT
TTCAAGGTTCAGCCTTGCTCAAGAGCTTACTCACATGATTGGACAGAGTG
CCCATTTGTTCATCCTGG
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