CV884445

Overview
NameCV884445
Unique NameCV884445
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length899
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig20 contig Csv1_Contig20:124..1022. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884445 vs. ExPASy Swiss-Prot
Match: C3H47_ARATH (Zinc finger CCCH domain-containing protein 47 OS=Arabidopsis thaliana GN=At3g55980 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.811e-26
Identity = 67/156 (42.95%), Postives = 89/156 (57.05%), Query Frame = -3
Query:  427 GIDTSGAIAAAVLSSRSAAFAKRSQSFIERNTVSRHSGFSSPDSTAAVMPSNLADWGSPDGKLDWGVQREDLNKLRKSASFGIRSNGGSVATSETSTPATADEPDVSWVQSLVRDSPSIRSGQFGFEEQQCHLNSGGSEMLPAWVEQLYMEQEQLV 894
            G ++S A A AV+ +RS AFAKRS SF                +T A   SNL+DWGSP+GKL+WG++ E+LNK+R+S SFGI  N  + A  +       DEPDVSWV SLV+DS  +    FG  E+           + +W EQ+Y E+EQ V
Sbjct:  452 GFESSAAAAVAVMKARSTAFAKRSLSF--------------KPATQAAPQSNLSDWGSPNGKLEWGMKGEELNKMRRSVSFGIHGNNNNNAARD-----YRDEPDVSWVNSLVKDSTVVSERSFGMNER---------VRIMSWAEQMYREKEQTV 579          
BLAST of CV884445 vs. ExPASy Swiss-Prot
Match: C3H29_ARATH (Zinc finger CCCH domain-containing protein 29 OS=Arabidopsis thaliana GN=At2g40140 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 8.206e-26
Identity = 70/161 (43.48%), Postives = 97/161 (60.25%), Query Frame = -3
Query:  427 GIDTSGAIAAAVLSSRSAAFAKRSQSFIERNTVSRHSGFSSPDSTAAVMPSNLADWGSPDGKLDWGVQREDLNKLRKSASFGIRSNGGSVATSETSTPAT--ADEPDVSWVQSLVRDSPSIRSGQFGFEEQQCHLNSGGSE---MLPAWVEQLYMEQEQLV 894
            G ++S A+AAAV+++RS+AFAKRS SF                   A + SN++DWGSP+GKL+WG+QR++LNKLR+SASFGI  N      +  S PA   +DEPDVSWV SLV+++   R      E     +N   S     LP+W EQ+Y++ EQ +
Sbjct:  460 GFESSAAMAAAVMNARSSAFAKRSLSF-----------------KPAPVASNVSDWGSPNGKLEWGMQRDELNKLRRSASFGIHGNN----NNSVSRPARDYSDEPDVSWVNSLVKENAPERVN----ERVGNTVNGAASRDKFKLPSWAEQMYIDHEQQI 595          
BLAST of CV884445 vs. ExPASy Swiss-Prot
Match: C3H33_ORYSJ (Zinc finger CCCH domain-containing protein 33 OS=Oryza sativa subsp. japonica GN=Os05g0128200 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.021e-24
Identity = 65/117 (55.56%), Postives = 80/117 (68.38%), Query Frame = -3
Query:  550 FGIDTSGAIAAAVLSSRSAAFAKRSQSFIERN-TVSRHSGFSSPDSTAAVMPSNLADWGSPDGKLDWGVQREDLNKLRKSASFGIRSNGGSVATSETSTPATADEPDVSWVQSLVRD 897
            FG+D S  +A A++SSR++AFAKRSQSFI+R           SP +T A  PS L+DWGSPDGKLDWGVQ ++L+KLRKSASF  R      +    +T A A EPDVSWV SLV+D
Sbjct:  474 FGLDHS--MAKAIMSSRASAFAKRSQSFIDRGGRAPAARSLMSPATTGA--PSILSDWGSPDGKLDWGVQGDELHKLRKSASFAFRGQ----SAMPVATHAAAAEPDVSWVNSLVKD 582          
BLAST of CV884445 vs. ExPASy Swiss-Prot
Match: C3H66_ARATH (Zinc finger CCCH domain-containing protein 66 OS=Arabidopsis thaliana GN=At5g58620 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.389e-22
Identity = 67/151 (44.37%), Postives = 84/151 (55.63%), Query Frame = -3
Query:  424 AAAVLSSRSAAFAK-RSQSFIERNT-VSRHSGFSSPDSTAAVMPSNLADWGSPDGKLDWGVQREDLNKLRKSASFGIRSNGGSVATSETSTPATADEPDVSWVQSLVRDSPSIRSGQFGFEEQQCHLNSGGSEMLPAWVEQLYMEQEQLVA 870
            ++AVL+SR+A FAK RSQSFIERN  ++ H   SS  +T       L DWGS DGKLDW VQ ++L KLRKS SF +R+ G         T    +EPDVSWV+ LV++    R                   + P W+EQ YME EQ VA
Sbjct:  484 SSAVLASRAAEFAKQRSQSFIERNNGLNHHPAISSMTTTC------LNDWGSLDGKLDWSVQGDELQKLRKSTSFRLRAGGMESRLPNEGT--GLEEPDVSWVEPLVKEPQETR-------------------LAPVWMEQSYMETEQTVA 607          
BLAST of CV884445 vs. ExPASy Swiss-Prot
Match: C3H24_ORYSJ (Zinc finger CCCH domain-containing protein 24 OS=Oryza sativa subsp. japonica GN=Os03g0698800 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.563e-11
Identity = 47/128 (36.72%), Postives = 68/128 (53.12%), Query Frame = -3
Query:  544 GIDTSGAIAAAVLSSRS-------AAFAKRS-QSFIERNTVSRHSGFSSPDSTAAV---MPSNLADWGSPDGKLDWGVQREDLNKLRKSASFGIRSNGGSVATSETSTPATADEPDVSWVQSLVRDSP 894
            GI + G ++   + S S       AA A+R  Q    R+  SR  G S+  ++  V   + S+ + WGSP G  DWGV  E+L KLR+S+SF +RS G              D+PD+SWV +LV++SP
Sbjct:  588 GISSPGRMSPRCVESGSPMNSHLAAALAQREKQQQTMRSLSSRDLGPSAARASGVVGSPLSSSWSKWGSPSGTPDWGVNGEELGKLRRSSSFELRSGG--------------DDPDLSWVHTLVKESP 701          
The following BLAST results are available for this feature:
BLAST of CV884445 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
C3H47_ARATH4.811e-2642.95Zinc finger CCCH domain-containing protein 47 OS=A... [more]
C3H29_ARATH8.206e-2643.48Zinc finger CCCH domain-containing protein 29 OS=A... [more]
C3H33_ORYSJ2.021e-2455.56Zinc finger CCCH domain-containing protein 33 OS=O... [more]
C3H66_ARATH9.389e-2244.37Zinc finger CCCH domain-containing protein 66 OS=A... [more]
C3H24_ORYSJ2.563e-1136.72Zinc finger CCCH domain-containing protein 24 OS=O... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003E04_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T3_E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884445 ID=CV884445; Name=CV884445; organism=Citrus sinensis; type=EST; length=899bp
GTTTACTTGTACAACTTTTGATACATATCATAATGAACAATAAACCAATA
AATCTGTATGCCTCTCCCCCTTTTTCAGATTGAAATGATTGATCTCACGC
AGTTCGAACTAATCTGCCTCCCTACTCTCTTCAGCAGAAAGATCATTCTT
TACCGCATCTTCCCACTTGAGATGAATTGGAGAACTCAAACAAAAACGAT
GAACAAATGACAAGGACAATAAGTAAACTATTATTCTTAACCTAACAGCA
GTTTGAGCAATACCTTAGATACTGCTCGACTTGTTTTCTCCATTGGGCTA
TACTTCTTTTCCTTCACCGTTTCCTTTCACTTACAGCTGATGATTACTAA
TAACAATTCAAAAAATGGCAAAATCTAGTTAAAAGTTAAATTTATAACTA
TATAGGGGCTAAGTTTGGTACTAGGCCACCAACTGCTCCTGCTCCATGTA
CAATTGCTCCACCCAAGCTGGAAGCATCTCTGAACCCCCAGAGTTAAGAT
GACACTGCTGCTCCTCAAAGCCAAATTGACCAGACCTTATGGATGGGCTG
TCCCTGACCAGGGACTGAACCCAAGACACATCAGGCTCATCCGCAGTTGC
TGGTGTTGAGGTTTCAGATGTTGCCACACTGCCACCATTGCTTCTAATAC
CAAAAGATGCAGATTTCCGCAGCTTGTTCAGATCCTCTCGCTGGACGCCC
CAGTCCAACTTACCATCAGGGGAACCCCAATCAGCCAGGTTAGAGGGCAT
TACAGCAGCTGTTGAATCTGGTGAAGAAAACCCAGAATGACGACTGACAG
TATTTCGCTCGATGAAGCTCTGACTCCGCTTTGCAAAGGCAGCTGATCTA
GAACTCAAAACTGCAGCTGCAATGGCCCCAGAGGTATCAATCCCAAAGG
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