EY665278

Overview
NameEY665278
Unique NameEY665278
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1046
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665278 vs. ExPASy Swiss-Prot
Match: CTNS_ARATH (Cystinosin homolog OS=Arabidopsis thaliana GN=At5g40670 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.070e-46
Identity = 77/103 (74.76%), Postives = 95/103 (92.23%), Query Frame = 3
Query:   72 MVSWNSVPLEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSPAVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLT 380
            M SWNS+PLEI+Y+++GWI+F +WS+SFYPQ+ILNFRR+SVVGLNFDFV+LNLTKHSSYMIYNV L+FSP +Q+QYF  YG  +MIPVAANDVAFS+HAV++T
Sbjct:    1 MASWNSIPLEISYEIVGWIAFASWSISFYPQLILNFRRRSVVGLNFDFVMLNLTKHSSYMIYNVCLYFSPVIQKQYFDTYGDKEMIPVAANDVAFSIHAVVMT 103          

HSP 2 Score: 30.8018 bits (68), Expect = 2.070e-46
Identity = 15/31 (48.39%), Postives = 24/31 (77.42%), Query Frame = 1
Query:  385 ITLFQNCIYERGVQKVSKISMANGLLLIGLG 477
            +TLFQ  IYERG QKVS++++  G++++  G
Sbjct:  105 VTLFQIFIYERGPQKVSRLAI--GIVVVVWG 133          

HSP 3 Score: 21.9422 bits (45), Expect = 2.070e-46
Identity = 8/27 (29.63%), Postives = 13/27 (48.15%), Query Frame = 2
Query:  479 ATVCIFEEMQSHSWF*DIRLYKKYSNF 559
            A +C F  + +HSW   I ++     F
Sbjct:  135 AAICFFIALPTHSWLWLISIFNSIQVF 161          
BLAST of EY665278 vs. ExPASy Swiss-Prot
Match: CTNS_HUMAN (Cystinosin OS=Homo sapiens GN=CTNS PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.692e-25
Identity = 54/99 (54.55%), Postives = 76/99 (76.77%), Query Frame = 3
Query:   87 SVPLEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSPAVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTI 383
            S  + I  QV+GWI FVAWS+SFYPQVI+N+RRKSV+GL+FDFV LNLT   +Y ++N+ L + P +++Q+  KY  + + PV +NDV FS+HAV+LT+
Sbjct:  120 SSAISIINQVIGWIYFVAWSISFYPQVIMNWRRKSVIGLSFDFVALNLTGFVAYSVFNIGLLWVPYIKEQFLLKY-PNGVNPVNSNDVFFSLHAVVLTL 217          

HSP 2 Score: 24.6386 bits (52), Expect = 1.692e-25
Identity = 10/17 (58.82%), Postives = 13/17 (76.47%), Query Frame = 1
Query:  385 ITLFQNCIYERGVQKVS 435
            I + Q C+YERG Q+VS
Sbjct:  218 IIIVQCCLYERGGQRVS 234          
BLAST of EY665278 vs. ExPASy Swiss-Prot
Match: CTNS_BOVIN (Cystinosin OS=Bos taurus GN=CTNS PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.519e-24
Identity = 55/96 (57.29%), Postives = 75/96 (78.12%), Query Frame = 3
Query:   96 LEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSPAVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTI 383
            + I  QV+GWI FVAWSVSFYPQVI N+RRKSVVGL+FDFV+LNL    +Y ++N+ LF+ P++++Q+  KY  + + PV +NDV FS+HAV LT+
Sbjct:  123 VSIINQVIGWIYFVAWSVSFYPQVITNWRRKSVVGLSFDFVVLNLMGFVAYSVFNIGLFWVPSIKEQFLLKY-PNGVNPVDSNDVFFSLHAVALTL 217          
BLAST of EY665278 vs. ExPASy Swiss-Prot
Match: CTNS_MOUSE (Cystinosin OS=Mus musculus GN=Ctns PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.767e-24
Identity = 51/96 (53.12%), Postives = 72/96 (75.00%), Query Frame = 3
Query:   96 LEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSPAVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTI 383
            + I  QV+GWI F+AWSVSFYPQVI N+RRKSV+GL+FDF+ LNLT   +Y ++N+ L + P +Q+++  KY  + + PV +ND  FS+HAV LT+
Sbjct:  123 VSIINQVIGWIYFMAWSVSFYPQVIQNWRRKSVIGLSFDFLALNLTGFVAYSVFNIGLLWVPYIQEEFLLKY-PNGVNPVDSNDAFFSLHAVALTL 217          

HSP 2 Score: 25.409 bits (54), Expect = 6.767e-24
Identity = 10/17 (58.82%), Postives = 13/17 (76.47%), Query Frame = 1
Query:  385 ITLFQNCIYERGVQKVS 435
            I + Q C+YERG Q+VS
Sbjct:  218 IVILQCCLYERGNQRVS 234          
BLAST of EY665278 vs. ExPASy Swiss-Prot
Match: CTNS_DICDI (Cystinosin homolog OS=Dictyostelium discoideum GN=ctns PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 6.204e-23
Identity = 48/95 (50.53%), Postives = 70/95 (73.68%), Query Frame = 3
Query:   96 LEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSPAVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLT 380
            L I   ++GWI F  WS+SFYPQVILNFR+K+V+GL+FDF+L N+T ++ Y ++N VL+F   V+ +Y+ KYG    IPV  +D+AF++H  +LT
Sbjct:    4 LSIISIIIGWIYFACWSLSFYPQVILNFRKKNVIGLSFDFLLFNITGYACYSVFNSVLYFDKLVKNEYYDKYG--PPIPVQQSDIAFAIHGFVLT 96          
BLAST of EY665278 vs. ExPASy Swiss-Prot
Match: CTNS_CAEBR (Cystinosin homolog OS=Caenorhabditis briggsae GN=ctns-1 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 4.161e-19
Identity = 46/93 (49.46%), Postives = 64/93 (68.82%), Query Frame = 3
Query:   96 LEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSPAVQQQYFQKYGRDQMIPVAANDVAFSMHAVL 374
            L I  Q++GW  F AWSVSFYPQ+ LNF+RKSVVGLNFDF+ LNL    +Y ++N++++++  V+  Y  +  R    PV  NDV F++HA L
Sbjct:  124 LAILIQIVGWTYFAAWSVSFYPQMYLNFKRKSVVGLNFDFLSLNLVGFGAYAMFNLLMYYNSHVKNIYSMENPRSPP-PVLLNDVVFAVHAFL 215          
BLAST of EY665278 vs. ExPASy Swiss-Prot
Match: CTNS_CAEEL (Cystinosin homolog OS=Caenorhabditis elegans GN=ctns-1 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 7.098e-19
Identity = 46/93 (49.46%), Postives = 64/93 (68.82%), Query Frame = 3
Query:   96 LEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSPAVQQQYFQKYGRDQMIPVAANDVAFSMHAVL 374
            L I  Q++GW  F AWS+SFYPQ+ LNF+RKSVVGLNFDF+ LNL    +Y I+N++++++  V+ +Y     R    PV  NDV F++HA L
Sbjct:  125 LAILIQIVGWTYFFAWSISFYPQMYLNFKRKSVVGLNFDFLSLNLVGFCAYAIFNLLMYYNSHVKNEYNIVNPRSPP-PVLLNDVVFAVHAFL 216          
BLAST of EY665278 vs. ExPASy Swiss-Prot
Match: CTNS_DROME (Cystinosin homolog OS=Drosophila melanogaster GN=CG17119 PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 6.009e-18
Identity = 44/89 (49.44%), Postives = 60/89 (67.42%), Query Frame = 3
Query:  114 VLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSPAVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLT 380
            + GW+ FVAWSVSFYPQ+  N+RRKSV GLNFDF+ LN+   + Y ++N  L+F   +Q +Y  +Y    + PV  NDV FS+HA+  T
Sbjct:  134 IFGWVYFVAWSVSFYPQIWSNYRRKSVEGLNFDFLALNIVGFTLYSMFNCGLYFIEDLQNEYEVRYPLG-VNPVMLNDVVFSLHAMFAT 221          
The following BLAST results are available for this feature:
BLAST of EY665278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
CTNS_ARATH2.070e-4674.76Cystinosin homolog OS=Arabidopsis thaliana GN=At5g... [more]
CTNS_HUMAN1.692e-2554.55Cystinosin OS=Homo sapiens GN=CTNS PE=1 SV=2[more]
CTNS_BOVIN2.519e-2457.29Cystinosin OS=Bos taurus GN=CTNS PE=2 SV=1[more]
CTNS_MOUSE6.767e-2453.13Cystinosin OS=Mus musculus GN=Ctns PE=1 SV=1[more]
CTNS_DICDI6.204e-2350.53Cystinosin homolog OS=Dictyostelium discoideum GN=... [more]
CTNS_CAEBR4.161e-1949.46Cystinosin homolog OS=Caenorhabditis briggsae GN=c... [more]
CTNS_CAEEL7.098e-1949.46Cystinosin homolog OS=Caenorhabditis elegans GN=ct... [more]
CTNS_DROME6.009e-1849.44Cystinosin homolog OS=Drosophila melanogaster GN=C... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-086-B01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665278 ID=EY665278; Name=EY665278; organism=Citrus sinensis; type=EST; length=1046bp
GGGTTACGGGGTCGGGATTCCCGGGTCGACCCCGCGTCCGAATTGGTGAC
CGTCGGTCCGGTGGAGAGAAAATGGTGTCGTGGAATTCAGTTCCGTTGGA
AATAACGTACCAAGTCCTCGGATGGATCTCATTCGTTGCGTGGTCCGTCA
GTTTCTACCCGCAGGTCATCTTAAACTTCCGTCGCAAAAGTGTTGTGGGA
TTGAACTTCGATTTCGTGTTGCTGAATTTGACGAAGCATTCCTCCTACAT
GATTTACAACGTCGTCCTCTTCTTTAGCCCCGCCGTTCAGCAACAGTACT
TTCAGAAGTACGGCCGCGATCAGATGATTCCCGTAGCAGCAAATGATGTT
GCGTTTTCAATGCATGCTGTTCTCTTGACAATAAATTACCCTGTTCCAAA
ATTGCATCTATGAACGTGGTGTTCAAAAGGTATCTAAAATTTCTATGGCA
AATGGTCTACTGTTGATTGGATTGGGTTGCGACAGTTTGTATCTTCGAAG
AAATGCAAAGCCATTCATGGTTTTAGGATATCAGACTTTATAAAAAATAT
TCAAATTTTACGAAACACCCATCAGATGTATTACCCAGAGCGATATAAAA
CTGTTGGGCAAAAGAAGGCAAACAGGGATTAACACAATGAAAAAAAAAAG
TAGTGGGATTTACCTGGGAGGGGAGGGAAAAAGATCAACCCGAAAAGTAA
ATTATTGAGACTAATAAAGATGAAATAACAGAGTGCTGGTAAATATTTCA
TCGAAAGAAGATAGGCGAAAGAAAAAGAGGAAGGATGACTGGGAAAAATG
ATCAAGAGAGACAAAAAAACCTGGATAATTAAGAAAGCAAAGGGACAAGA
AAAAAGCGGCTATACACAAAAGAAAAAGAAAGCAGATAAATGAAGAAAGT
CCGCCTACATATAATCAAGTGAATAGAAAAAAAATGATGGATTAAGATTA
GGAATAAACTAACAGGAGAATATATGAAACGGAAAGAATCAGATATACGA
GAAAATGTCACATGAANGTGTGAATAGAGGAAATAGCGGGAAGGTG
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