CV884438

Overview
NameCV884438
Unique NameCV884438
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length161
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11121 contig Csv1_Contig11121:393..553. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CV884438 vs. ExPASy Swiss-Prot
Match: EF1A_WHEAT (Elongation factor 1-alpha OS=Triticum aestivum GN=TEF1 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.320e-18
Identity = 44/45 (97.78%), Postives = 44/45 (97.78%), Query Frame = -1 
Query:   24 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTRGVKQMI 158
            GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT GVKQMI
Sbjct:  105 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMI 149
[Close]
BLAST of CV884438 vs. ExPASy Swiss-Prot
Match: EF1A_VICFA (Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.320e-18
Identity = 44/45 (97.78%), Postives = 44/45 (97.78%), Query Frame = -1 
Query:   24 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTRGVKQMI 158
            GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT GVKQMI
Sbjct:  105 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMI 149
[Close]
BLAST of CV884438 vs. ExPASy Swiss-Prot
Match: EF1A_TOBAC (Elongation factor 1-alpha OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.320e-18
Identity = 44/45 (97.78%), Postives = 44/45 (97.78%), Query Frame = -1 
Query:   24 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTRGVKQMI 158
            GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT GVKQMI
Sbjct:  105 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMI 149
[Close]
BLAST of CV884438 vs. ExPASy Swiss-Prot
Match: EF1A_SOLLC (Elongation factor 1-alpha OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.320e-18
Identity = 44/45 (97.78%), Postives = 44/45 (97.78%), Query Frame = -1 
Query:   24 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTRGVKQMI 158
            GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT GVKQMI
Sbjct:  105 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMI 149
[Close]
BLAST of CV884438 vs. ExPASy Swiss-Prot
Match: EF1A_PEA (Elongation factor 1-alpha OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.320e-18
Identity = 44/45 (97.78%), Postives = 44/45 (97.78%), Query Frame = -1 
Query:   24 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTRGVKQMI 158
            GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT GVKQMI
Sbjct:  105 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMI 149
[Close]
BLAST of CV884438 vs. ExPASy Swiss-Prot
Match: EF1A_ORYSJ (Elongation factor 1-alpha OS=Oryza sativa subsp. japonica GN=REFA1 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 8.320e-18
Identity = 44/45 (97.78%), Postives = 44/45 (97.78%), Query Frame = -1 
Query:   24 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTRGVKQMI 158
            GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT GVKQMI
Sbjct:  105 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMI 149
[Close]
BLAST of CV884438 vs. ExPASy Swiss-Prot
Match: EF1A_MANES (Elongation factor 1-alpha OS=Manihot esculenta GN=EF1 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.320e-18
Identity = 44/45 (97.78%), Postives = 44/45 (97.78%), Query Frame = -1 
Query:   24 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTRGVKQMI 158
            GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT GVKQMI
Sbjct:  105 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMI 149
[Close]
BLAST of CV884438 vs. ExPASy Swiss-Prot
Match: EF1A_MAIZE (Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.320e-18
Identity = 44/45 (97.78%), Postives = 44/45 (97.78%), Query Frame = -1 
Query:   24 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTRGVKQMI 158
            GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT GVKQMI
Sbjct:  105 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMI 149
[Close]
BLAST of CV884438 vs. ExPASy Swiss-Prot
Match: EF1A_ARATH (Elongation factor 1-alpha OS=Arabidopsis thaliana GN=A1 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.320e-18
Identity = 44/45 (97.78%), Postives = 44/45 (97.78%), Query Frame = -1 
Query:   24 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTRGVKQMI 158
            GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT GVKQMI
Sbjct:  105 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMI 149
[Close]
BLAST of CV884438 vs. ExPASy Swiss-Prot
Match: EF1A2_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.320e-18
Identity = 44/45 (97.78%), Postives = 44/45 (97.78%), Query Frame = -1 
Query:   24 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTRGVKQMI 158
            GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT GVKQMI
Sbjct:  105 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMI 149
The following BLAST results are available for this feature:
BLAST of CV884438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
EF1A_WHEAT8.320e-1897.78Elongation factor 1-alpha OS=Triticum aestivum GN=... [more]
EF1A_VICFA8.320e-1897.78Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1[more]
EF1A_TOBAC8.320e-1897.78Elongation factor 1-alpha OS=Nicotiana tabacum PE=... [more]
EF1A_SOLLC8.320e-1897.78Elongation factor 1-alpha OS=Solanum lycopersicum ... [more]
EF1A_PEA8.320e-1897.78Elongation factor 1-alpha OS=Pisum sativum PE=2 SV... [more]
EF1A_ORYSJ8.320e-1897.78Elongation factor 1-alpha OS=Oryza sativa subsp. j... [more]
EF1A_MANES8.320e-1897.78Elongation factor 1-alpha OS=Manihot esculenta GN=... [more]
EF1A_MAIZE8.320e-1897.78Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3... [more]
EF1A_ARATH8.320e-1897.78Elongation factor 1-alpha OS=Arabidopsis thaliana ... [more]
EF1A2_DAUCA8.320e-1897.78Elongation factor 1-alpha OS=Daucus carota PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003D11_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T7_D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884438 ID=CV884438; Name=CV884438; organism=Citrus sinensis; type=EST; length=161bp
TGGCGTCCATCTTGTTCAGCAGCAATCATCTGCTTCACACCACGGGTGAA
AGCAAGCAAAGCATGCTCACGAGTCTGACCATCCTTGGAGATACCAGCTT
CAAAACCACCGGTGGTGGAGTCAATGATGAGGACGGCACAGTCAGCCTGT
GAGGTACCCCT
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